Clone BO18213 Report

Search the DGRC for BO18213

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptRpS14a-RA
Protein status:BO18213.pep: validated full length
Sequenced Size:487

Clone Sequence Records

BO18213.3prime Sequence

485 bp (485 high quality bases) assembled on 2006-10-13

> BO18213.3prime
ATGGTCTAGAAAGCTTGCCAGACGACGACCTCGGCGACCGCCCTTCCTGC
GGGTAGAGTCCGATGGGATAGGGGTCACATCCTCGATGCGGCCAATCTTC
ATGGACGAACGGGCCAACGCACGCAGAGCGGACTGGGCGCCGGGTCCGGG
GGTCTTGGTCTTGTTGCCGCCGGTGGCACGCAGCTTAATATGCAGGGCAG
TGATGCCCAGTGTCTTGCACTTCTCAGCCACATCCTGAGCGGCCAACATA
GCGGCGTAGGGCGAAGCCTCATCACGATCGGCCTTCACCTTCATGCCTCC
GGTGACACGAGCGATGGTCTCACGGCCGGACAGATCCGTGACATGGACGA
AGGTGTCGTTGAAGCTGGCGTAGATGTGAGCCACTCCGAACACGATCTCG
CCGTCGCGAACTTGGGGTCCCAGCTGGACCTGAACCTCCTCCTTCTGAAC
TTTAGCCTTTCTTGGAGCCATGTCGACTGATAACT

BO18213.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1527-PA 456 RpS14b-RA 1..453 471..19 2265 100 Minus
CG1524-PB 456 RpS14a-RB 13..453 459..19 2030 98.4 Minus
CG1524-PA 456 RpS14a-RA 13..453 459..19 2030 98.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpS14b-RB 562 CG1527-RB 32..484 471..19 2265 100 Minus
RpS14b-RA 594 CG1527-RA 64..516 471..19 2265 100 Minus
RpS14a-RA 877 CG1524-RA 293..745 471..19 2115 97.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7935203..7935440 471..234 1190 100 Minus
X 23542271 X 7934034..7934271 471..234 1130 98.3 Minus
X 23542271 X 7935496..7935714 237..19 1095 100 Minus
X 23542271 X 7934327..7934545 237..19 1005 97.3 Minus
Blast to na_te.dros performed on 2015-02-02 17:54:17 has no hits.

BO18213.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:57 Download gff for BO18213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1527-PA 1..456 18..471 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:26 Download gff for BO18213.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS14b-RA 56..516 19..480 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:10 Download gff for BO18213.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS14b-RA 56..516 19..480 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:10 Download gff for BO18213.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7935195..7935439 235..480 98 -> Minus
X 7935499..7935714 19..234 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:26 Download gff for BO18213.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7829228..7829472 235..480 98 -> Minus
arm_X 7829532..7829747 19..234 100   Minus

BO18213.5prime Sequence

485 bp (485 high quality bases) assembled on 2006-10-13

> BO18213.5prime
GAAGTTATCAGTCGACATGGCTCCAAGAAAGGCTAAAGTTCAGAAGGAGG
AGGTTCAGGTCCAGCTGGGACCCCAAGTTCGCGACGGCGAGATCGTGTTC
GGAGTGGCTCACATCTACGCCAGCTTCAACGACACCTTCGTCCATGTCAC
GGATCTGTCCGGCCGTGAGACCATCGCTCGTGTCACCGGAGGCATGAAGG
TGAAGGCCGATCGTGATGAGGCTTCGCCCTACGCCGCTATGTTGGCCGCT
CAGGATGTGGCTGAGAAGTGCAAGACACTGGGCATCACTGCCCTGCATAT
TAAGCTGCGTGCCACCGGCGGCAACAAGACCAAGACCCCCGGACCCGGCG
CCCAGTCCGCTCTGCGTGCGTTGGCCCGTTCGTCCATGAAGATTGGCCGC
ATCGAGGATGTGACCCCTATCCCATCGGACTCTACCCGCAGGAAGGGCGG
TCGCCGAGGTCGTCGTCTGGCAAGCTTTCTAGACC

BO18213.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1527-PA 456 RpS14b-RA 1..453 17..469 2265 100 Plus
CG1524-PB 456 RpS14a-RB 13..453 29..469 2030 98.4 Plus
CG1524-PA 456 RpS14a-RA 13..453 29..469 2030 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
RpS14b-RB 562 CG1527-RB 32..484 17..469 2265 100 Plus
RpS14b-RA 594 CG1527-RA 64..516 17..469 2265 100 Plus
RpS14a-RA 877 CG1524-RA 293..745 17..469 2115 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7935203..7935440 17..254 1190 100 Plus
X 23542271 X 7934034..7934271 17..254 1130 98.3 Plus
X 23542271 X 7935496..7935714 251..469 1095 100 Plus
X 23542271 X 7934327..7934545 251..469 1005 97.3 Plus
Blast to na_te.dros performed on 2015-02-10 16:00:04 has no hits.

BO18213.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:58 Download gff for BO18213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1527-PA 1..456 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:17 Download gff for BO18213.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS14b-RA 56..516 8..469 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:10 Download gff for BO18213.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS14b-RA 56..516 8..469 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:10 Download gff for BO18213.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7935499..7935714 254..469 100   Plus
X 7935195..7935439 8..253 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:17 Download gff for BO18213.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7829228..7829472 8..253 98 -> Plus
arm_X 7829532..7829747 254..469 100   Plus

BO18213.complete Sequence

487 bp assembled on 2006-10-11

GenBank Submission: FJ634344

> BO18213.complete
GAAGTTATCAGTCGACATGGCTCCAAGAAAGGCTAAAGTTCAGAAGGAGG
AGGTTCAGGTCCAGCTGGGACCCCAAGTTCGCGACGGCGAGATCGTGTTC
GGAGTGGCTCACATCTACGCCAGCTTCAACGACACCTTCGTCCATGTCAC
GGATCTGTCCGGCCGTGAGACCATCGCTCGTGTCACCGGAGGCATGAAGG
TGAAGGCCGATCGTGATGAGGCTTCGCCCTACGCCGCTATGTTGGCCGCT
CAGGATGTGGCTGAGAAGTGCAAGACACTGGGCATCACTGCCCTGCATAT
TAAGCTGCGTGCCACCGGCGGCAACAAGACCAAGACCCCCGGACCCGGCG
CCCAGTCCGCTCTGCGTGCGTTGGCCCGTTCGTCCATGAAGATTGGCCGC
ATCGAGGATGTGACCCCTATCCCATCGGACTCTACCCGCAGGAAGGGCGG
TCGCCGAGGTCGTCGTCTGGCAAGCTTTCTAGACCAT

BO18213.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpS14b-RB 456 CG1527-PB 1..453 17..469 2265 100 Plus
RpS14b-RA 456 CG1527-PA 1..453 17..469 2265 100 Plus
RpS14a-RA 456 CG1524-PA 1..453 17..469 2115 97.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpS14b-RB 562 CG1527-RB 32..484 17..469 2265 100 Plus
RpS14b-RA 594 CG1527-RA 64..516 17..469 2265 100 Plus
RpS14a-RA 877 CG1524-RA 293..745 17..469 2115 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7935203..7935440 17..254 1190 100 Plus
X 23542271 X 7934034..7934271 17..254 1130 98.3 Plus
X 23542271 X 7935496..7935714 251..469 1095 100 Plus
X 23542271 X 7934327..7934545 251..469 1005 97.3 Plus
Blast to na_te.dros performed on 2014-11-27 06:47:29 has no hits.

BO18213.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:26 Download gff for BO18213.complete
Subject Subject Range Query Range Percent Splice Strand
RpS14b-RA 1..456 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:37 Download gff for BO18213.complete
Subject Subject Range Query Range Percent Splice Strand
RpS14b-RA 50..510 8..469 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:22 Download gff for BO18213.complete
Subject Subject Range Query Range Percent Splice Strand
RpS14b-RA 64..516 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:26 Download gff for BO18213.complete
Subject Subject Range Query Range Percent Splice Strand
RpS14b-RA 50..510 8..469 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:27 Download gff for BO18213.complete
Subject Subject Range Query Range Percent Splice Strand
RpS14b-RA 64..516 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:27 Download gff for BO18213.complete
Subject Subject Range Query Range Percent Splice Strand
X 7935203..7935439 17..253 100 -> Plus
X 7935499..7935714 254..471 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:22 Download gff for BO18213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7829236..7829472 17..253 100 -> Plus
arm_X 7829532..7829747 254..471 99   Plus

BO18213.pep Sequence

Translation from 16 to 487

> BO18213.pep
MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGR
ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAT
GGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKGGRRGRR
LASFLDH

BO18213.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS14b-PB 151 CG1527-PB 1..151 1..151 759 100 Plus
RpS14b-PA 151 CG1527-PA 1..151 1..151 759 100 Plus
RpS14a-PA 151 CG1524-PA 1..151 1..151 759 100 Plus
RpS14a-PB 151 CG1524-PB 1..151 1..151 759 100 Plus