Clone Sequence Records
BO18213.3prime Sequence
485 bp (485 high quality bases) assembled on 2006-10-13
> BO18213.3prime
ATGGTCTAGAAAGCTTGCCAGACGACGACCTCGGCGACCGCCCTTCCTGC
GGGTAGAGTCCGATGGGATAGGGGTCACATCCTCGATGCGGCCAATCTTC
ATGGACGAACGGGCCAACGCACGCAGAGCGGACTGGGCGCCGGGTCCGGG
GGTCTTGGTCTTGTTGCCGCCGGTGGCACGCAGCTTAATATGCAGGGCAG
TGATGCCCAGTGTCTTGCACTTCTCAGCCACATCCTGAGCGGCCAACATA
GCGGCGTAGGGCGAAGCCTCATCACGATCGGCCTTCACCTTCATGCCTCC
GGTGACACGAGCGATGGTCTCACGGCCGGACAGATCCGTGACATGGACGA
AGGTGTCGTTGAAGCTGGCGTAGATGTGAGCCACTCCGAACACGATCTCG
CCGTCGCGAACTTGGGGTCCCAGCTGGACCTGAACCTCCTCCTTCTGAAC
TTTAGCCTTTCTTGGAGCCATGTCGACTGATAACT
BO18213.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1527-PA | 456 | RpS14b-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
CG1524-PB | 456 | RpS14a-RB | 13..453 | 459..19 | 2030 | 98.4 | Minus |
CG1524-PA | 456 | RpS14a-RA | 13..453 | 459..19 | 2030 | 98.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS14b-RB | 562 | CG1527-RB | 32..484 | 471..19 | 2265 | 100 | Minus |
RpS14b-RA | 594 | CG1527-RA | 64..516 | 471..19 | 2265 | 100 | Minus |
RpS14a-RA | 877 | CG1524-RA | 293..745 | 471..19 | 2115 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7935203..7935440 | 471..234 | 1190 | 100 | Minus |
X | 23542271 | X | 7934034..7934271 | 471..234 | 1130 | 98.3 | Minus |
X | 23542271 | X | 7935496..7935714 | 237..19 | 1095 | 100 | Minus |
X | 23542271 | X | 7934327..7934545 | 237..19 | 1005 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:54:17 has no hits.
BO18213.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:57 Download gff for
BO18213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1527-PA | 1..456 | 18..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:26 Download gff for
BO18213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS14b-RA | 56..516 | 19..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:10 Download gff for
BO18213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS14b-RA | 56..516 | 19..480 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:10 Download gff for
BO18213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7935195..7935439 | 235..480 | 98 | -> | Minus |
X | 7935499..7935714 | 19..234 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:26 Download gff for
BO18213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7829228..7829472 | 235..480 | 98 | -> | Minus |
arm_X | 7829532..7829747 | 19..234 | 100 | | Minus |
BO18213.5prime Sequence
485 bp (485 high quality bases) assembled on 2006-10-13
> BO18213.5prime
GAAGTTATCAGTCGACATGGCTCCAAGAAAGGCTAAAGTTCAGAAGGAGG
AGGTTCAGGTCCAGCTGGGACCCCAAGTTCGCGACGGCGAGATCGTGTTC
GGAGTGGCTCACATCTACGCCAGCTTCAACGACACCTTCGTCCATGTCAC
GGATCTGTCCGGCCGTGAGACCATCGCTCGTGTCACCGGAGGCATGAAGG
TGAAGGCCGATCGTGATGAGGCTTCGCCCTACGCCGCTATGTTGGCCGCT
CAGGATGTGGCTGAGAAGTGCAAGACACTGGGCATCACTGCCCTGCATAT
TAAGCTGCGTGCCACCGGCGGCAACAAGACCAAGACCCCCGGACCCGGCG
CCCAGTCCGCTCTGCGTGCGTTGGCCCGTTCGTCCATGAAGATTGGCCGC
ATCGAGGATGTGACCCCTATCCCATCGGACTCTACCCGCAGGAAGGGCGG
TCGCCGAGGTCGTCGTCTGGCAAGCTTTCTAGACC
BO18213.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1527-PA | 456 | RpS14b-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
CG1524-PB | 456 | RpS14a-RB | 13..453 | 29..469 | 2030 | 98.4 | Plus |
CG1524-PA | 456 | RpS14a-RA | 13..453 | 29..469 | 2030 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS14b-RB | 562 | CG1527-RB | 32..484 | 17..469 | 2265 | 100 | Plus |
RpS14b-RA | 594 | CG1527-RA | 64..516 | 17..469 | 2265 | 100 | Plus |
RpS14a-RA | 877 | CG1524-RA | 293..745 | 17..469 | 2115 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7935203..7935440 | 17..254 | 1190 | 100 | Plus |
X | 23542271 | X | 7934034..7934271 | 17..254 | 1130 | 98.3 | Plus |
X | 23542271 | X | 7935496..7935714 | 251..469 | 1095 | 100 | Plus |
X | 23542271 | X | 7934327..7934545 | 251..469 | 1005 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:00:04 has no hits.
BO18213.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:58 Download gff for
BO18213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1527-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:17 Download gff for
BO18213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS14b-RA | 56..516 | 8..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:10 Download gff for
BO18213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS14b-RA | 56..516 | 8..469 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:10 Download gff for
BO18213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7935499..7935714 | 254..469 | 100 | | Plus |
X | 7935195..7935439 | 8..253 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:17 Download gff for
BO18213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7829228..7829472 | 8..253 | 98 | -> | Plus |
arm_X | 7829532..7829747 | 254..469 | 100 | | Plus |
BO18213.complete Sequence
487 bp assembled on 2006-10-11
GenBank Submission: FJ634344
> BO18213.complete
GAAGTTATCAGTCGACATGGCTCCAAGAAAGGCTAAAGTTCAGAAGGAGG
AGGTTCAGGTCCAGCTGGGACCCCAAGTTCGCGACGGCGAGATCGTGTTC
GGAGTGGCTCACATCTACGCCAGCTTCAACGACACCTTCGTCCATGTCAC
GGATCTGTCCGGCCGTGAGACCATCGCTCGTGTCACCGGAGGCATGAAGG
TGAAGGCCGATCGTGATGAGGCTTCGCCCTACGCCGCTATGTTGGCCGCT
CAGGATGTGGCTGAGAAGTGCAAGACACTGGGCATCACTGCCCTGCATAT
TAAGCTGCGTGCCACCGGCGGCAACAAGACCAAGACCCCCGGACCCGGCG
CCCAGTCCGCTCTGCGTGCGTTGGCCCGTTCGTCCATGAAGATTGGCCGC
ATCGAGGATGTGACCCCTATCCCATCGGACTCTACCCGCAGGAAGGGCGG
TCGCCGAGGTCGTCGTCTGGCAAGCTTTCTAGACCAT
BO18213.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS14b-RB | 456 | CG1527-PB | 1..453 | 17..469 | 2265 | 100 | Plus |
RpS14b-RA | 456 | CG1527-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
RpS14a-RA | 456 | CG1524-PA | 1..453 | 17..469 | 2115 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS14b-RB | 562 | CG1527-RB | 32..484 | 17..469 | 2265 | 100 | Plus |
RpS14b-RA | 594 | CG1527-RA | 64..516 | 17..469 | 2265 | 100 | Plus |
RpS14a-RA | 877 | CG1524-RA | 293..745 | 17..469 | 2115 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7935203..7935440 | 17..254 | 1190 | 100 | Plus |
X | 23542271 | X | 7934034..7934271 | 17..254 | 1130 | 98.3 | Plus |
X | 23542271 | X | 7935496..7935714 | 251..469 | 1095 | 100 | Plus |
X | 23542271 | X | 7934327..7934545 | 251..469 | 1005 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:47:29 has no hits.
BO18213.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:26 Download gff for
BO18213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS14b-RA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:37 Download gff for
BO18213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS14b-RA | 50..510 | 8..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:22 Download gff for
BO18213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS14b-RA | 64..516 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:26 Download gff for
BO18213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS14b-RA | 50..510 | 8..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:27 Download gff for
BO18213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS14b-RA | 64..516 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:27 Download gff for
BO18213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7935203..7935439 | 17..253 | 100 | -> | Plus |
X | 7935499..7935714 | 254..471 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:22 Download gff for
BO18213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7829236..7829472 | 17..253 | 100 | -> | Plus |
arm_X | 7829532..7829747 | 254..471 | 99 | | Plus |
BO18213.pep Sequence
Translation from 16 to 487
> BO18213.pep
MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGR
ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAT
GGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKGGRRGRR
LASFLDH
BO18213.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS14b-PB | 151 | CG1527-PB | 1..151 | 1..151 | 759 | 100 | Plus |
RpS14b-PA | 151 | CG1527-PA | 1..151 | 1..151 | 759 | 100 | Plus |
RpS14a-PA | 151 | CG1524-PA | 1..151 | 1..151 | 759 | 100 | Plus |
RpS14a-PB | 151 | CG1524-PB | 1..151 | 1..151 | 759 | 100 | Plus |