Clone BO18215 Report

Search the DGRC for BO18215

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG3683-RA
Protein status:BO18215.pep: validated full length
Sequenced Size:559

Clone Sequence Records

BO18215.5prime Sequence

557 bp (557 high quality bases) assembled on 2006-10-13

> BO18215.5prime
GAAGTTATCAGTCGACATGGTCATCACCAACAACACAACACTGCCCGAGG
AGTCGGAGCTGAACGTCCAGGAGCTAAATCTATCGTCGGCGGCCTTACGG
GCAGGCGCCTTCCATTTGGGCAAGCAATGCGAGCAGGCCAATAATGAGTT
TATGCTGTGCCGGCAGGAGCTGGATGACCCGCGAGCCTGTTTGGCGGAGG
GCAAAGCCGTGACCAGCTGCGCCCTGGACTTCTTCCGCAAGGTGAAGAAG
ACCTGCCATGAGGAGTTCACGCAGTACGCCACCTGCCTGGATAAGAGCAG
CGGTACTATGGCTTTTTCACATTGCCGCAAGACCCAGGGAGTGTTCGACA
AGTGTATCAAAGATAACTTCGACTGGGATCGTCCCTCCTATGGATACTTC
TCGAGGGCCAAGGTCATCCAATCAGCTCGGGAAGCACCCAAGAAGGAGGA
GAAGGTCTCCTATCCCGATGCCACCCCCGGTTTGCCCGAGGATTACCCCA
AGCCGCCAGCAAAGTACGGTTCCCGCTTCCACTGGCTGGAGGCAAGCTTT
CTAGACC

BO18215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3683-PA 528 CG3683-RA 1..525 17..541 2625 100 Plus
CG3683-PB 528 CG3683-RB 1..525 17..541 2625 100 Plus
CG3683-PC 528 CG3683-RC 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFA8-RD 666 CG3683-RD 68..592 17..541 2625 100 Plus
NDUFA8-RC 683 CG3683-RC 85..609 17..541 2625 100 Plus
NDUFA8-RB 668 CG3683-RB 70..594 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24664854..24665029 146..321 880 100 Plus
2R 25286936 2R 24665235..24665365 411..541 655 100 Plus
2R 25286936 2R 24664551..24664680 17..146 650 100 Plus
2R 25286936 2R 24665093..24665185 322..414 465 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:08:14 has no hits.

BO18215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:58 Download gff for BO18215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3683-PC 1..528 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:02 Download gff for BO18215.5prime
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..594 17..541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:36 Download gff for BO18215.5prime
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..594 17..541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:36 Download gff for BO18215.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24665237..24665365 413..541 100   Plus
2R 24664551..24664679 17..145 100 -> Plus
2R 24664854..24665029 146..321 100 -> Plus
2R 24665093..24665183 322..412 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:02 Download gff for BO18215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20552074..20552202 17..145 100 -> Plus
arm_2R 20552377..20552552 146..321 100 -> Plus
arm_2R 20552616..20552706 322..412 100 -> Plus
arm_2R 20552760..20552888 413..541 100   Plus

BO18215.complete Sequence

559 bp assembled on 2006-10-11

GenBank Submission: FJ634345

> BO18215.complete
GAAGTTATCAGTCGACATGGTCATCACCAACAACACAACACTGCCCGAGG
AGTCGGAGCTGAACGTCCAGGAGCTAAATCTATCGTCGGCGGCCTTACGG
GCAGGCGCCTTCCATTTGGGCAAGCAATGCGAGCAGGCCAATAATGAGTT
TATGCTGTGCCGGCAGGAGCTGGATGACCCGCGAGCCTGTTTGGCGGAGG
GCAAAGCCGTGACCAGCTGCGCCCTGGACTTCTTCCGCAAGGTGAAGAAG
ACCTGCCATGAGGAGTTCACGCAGTACGCCACCTGCCTGGATAAGAGCAG
CGGTACTATGGCTTTTTCACATTGCCGCAAGACCCAGGGAGTGTTCGACA
AGTGTATCAAAGATAACTTCGACTGGGATCGTCCCTCCTATGGATACTTC
TCGAGGGCCAAGGTCATCCAATCAGCTCGGGAAGCACCCAAGAAGGAGGA
GAAGGTCTCCTATCCCGATGCCACCCCCGGTTTGCCCGAGGATTACCCCA
AGCCGCCAGCAAAGTACGGTTCCCGCTTCCACTGGCTGGAGGCAAGCTTT
CTAGACCAT

BO18215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFA8-RD 528 CG3683-PD 1..525 17..541 2625 100 Plus
NDUFA8-RC 528 CG3683-PC 1..525 17..541 2625 100 Plus
NDUFA8-RB 528 CG3683-PB 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFA8-RD 666 CG3683-RD 68..592 17..541 2625 100 Plus
NDUFA8-RC 683 CG3683-RC 85..609 17..541 2625 100 Plus
NDUFA8-RB 668 CG3683-RB 70..594 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24664854..24665029 146..321 880 100 Plus
2R 25286936 2R 24665235..24665365 411..541 655 100 Plus
2R 25286936 2R 24664551..24664680 17..146 650 100 Plus
2R 25286936 2R 24665093..24665185 322..414 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:47:08 has no hits.

BO18215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:27 Download gff for BO18215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3683-RC 1..528 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:39 Download gff for BO18215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3683-RA 76..600 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:30 Download gff for BO18215.complete
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..594 17..543 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:27 Download gff for BO18215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3683-RA 76..600 17..541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:31 Download gff for BO18215.complete
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..594 17..543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:31 Download gff for BO18215.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24665237..24665365 413..543 98   Plus
2R 24664551..24664679 17..145 100 -> Plus
2R 24664854..24665029 146..321 100 -> Plus
2R 24665093..24665183 322..412 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:30 Download gff for BO18215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20552074..20552202 17..145 100 -> Plus
arm_2R 20552377..20552552 146..321 100 -> Plus
arm_2R 20552616..20552706 322..412 100 -> Plus
arm_2R 20552760..20552888 413..543 98   Plus

BO18215.pep Sequence

Translation from 16 to 559

> BO18215.pep
MVITNNTTLPEESELNVQELNLSSAALRAGAFHLGKQCEQANNEFMLCRQ
ELDDPRACLAEGKAVTSCALDFFRKVKKTCHEEFTQYATCLDKSSGTMAF
SHCRKTQGVFDKCIKDNFDWDRPSYGYFSRAKVIQSAREAPKKEEKVSYP
DATPGLPEDYPKPPAKYGSRFHWLEASFLDH

BO18215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFA8-PD 175 CG3683-PD 1..175 1..175 947 100 Plus
NDUFA8-PC 175 CG3683-PC 1..175 1..175 947 100 Plus
NDUFA8-PB 175 CG3683-PB 1..175 1..175 947 100 Plus
NDUFA8-PA 175 CG3683-PA 1..175 1..175 947 100 Plus