Clone Sequence Records
BO18215.5prime Sequence
557 bp (557 high quality bases) assembled on 2006-10-13
> BO18215.5prime
GAAGTTATCAGTCGACATGGTCATCACCAACAACACAACACTGCCCGAGG
AGTCGGAGCTGAACGTCCAGGAGCTAAATCTATCGTCGGCGGCCTTACGG
GCAGGCGCCTTCCATTTGGGCAAGCAATGCGAGCAGGCCAATAATGAGTT
TATGCTGTGCCGGCAGGAGCTGGATGACCCGCGAGCCTGTTTGGCGGAGG
GCAAAGCCGTGACCAGCTGCGCCCTGGACTTCTTCCGCAAGGTGAAGAAG
ACCTGCCATGAGGAGTTCACGCAGTACGCCACCTGCCTGGATAAGAGCAG
CGGTACTATGGCTTTTTCACATTGCCGCAAGACCCAGGGAGTGTTCGACA
AGTGTATCAAAGATAACTTCGACTGGGATCGTCCCTCCTATGGATACTTC
TCGAGGGCCAAGGTCATCCAATCAGCTCGGGAAGCACCCAAGAAGGAGGA
GAAGGTCTCCTATCCCGATGCCACCCCCGGTTTGCCCGAGGATTACCCCA
AGCCGCCAGCAAAGTACGGTTCCCGCTTCCACTGGCTGGAGGCAAGCTTT
CTAGACC
BO18215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3683-PA | 528 | CG3683-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
CG3683-PB | 528 | CG3683-RB | 1..525 | 17..541 | 2625 | 100 | Plus |
CG3683-PC | 528 | CG3683-RC | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFA8-RD | 666 | CG3683-RD | 68..592 | 17..541 | 2625 | 100 | Plus |
NDUFA8-RC | 683 | CG3683-RC | 85..609 | 17..541 | 2625 | 100 | Plus |
NDUFA8-RB | 668 | CG3683-RB | 70..594 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24664854..24665029 | 146..321 | 880 | 100 | Plus |
2R | 25286936 | 2R | 24665235..24665365 | 411..541 | 655 | 100 | Plus |
2R | 25286936 | 2R | 24664551..24664680 | 17..146 | 650 | 100 | Plus |
2R | 25286936 | 2R | 24665093..24665185 | 322..414 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:08:14 has no hits.
BO18215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:58 Download gff for
BO18215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3683-PC | 1..528 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:02 Download gff for
BO18215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..594 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:36 Download gff for
BO18215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..594 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:36 Download gff for
BO18215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24665237..24665365 | 413..541 | 100 | | Plus |
2R | 24664551..24664679 | 17..145 | 100 | -> | Plus |
2R | 24664854..24665029 | 146..321 | 100 | -> | Plus |
2R | 24665093..24665183 | 322..412 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:02 Download gff for
BO18215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20552074..20552202 | 17..145 | 100 | -> | Plus |
arm_2R | 20552377..20552552 | 146..321 | 100 | -> | Plus |
arm_2R | 20552616..20552706 | 322..412 | 100 | -> | Plus |
arm_2R | 20552760..20552888 | 413..541 | 100 | | Plus |
BO18215.complete Sequence
559 bp assembled on 2006-10-11
GenBank Submission: FJ634345
> BO18215.complete
GAAGTTATCAGTCGACATGGTCATCACCAACAACACAACACTGCCCGAGG
AGTCGGAGCTGAACGTCCAGGAGCTAAATCTATCGTCGGCGGCCTTACGG
GCAGGCGCCTTCCATTTGGGCAAGCAATGCGAGCAGGCCAATAATGAGTT
TATGCTGTGCCGGCAGGAGCTGGATGACCCGCGAGCCTGTTTGGCGGAGG
GCAAAGCCGTGACCAGCTGCGCCCTGGACTTCTTCCGCAAGGTGAAGAAG
ACCTGCCATGAGGAGTTCACGCAGTACGCCACCTGCCTGGATAAGAGCAG
CGGTACTATGGCTTTTTCACATTGCCGCAAGACCCAGGGAGTGTTCGACA
AGTGTATCAAAGATAACTTCGACTGGGATCGTCCCTCCTATGGATACTTC
TCGAGGGCCAAGGTCATCCAATCAGCTCGGGAAGCACCCAAGAAGGAGGA
GAAGGTCTCCTATCCCGATGCCACCCCCGGTTTGCCCGAGGATTACCCCA
AGCCGCCAGCAAAGTACGGTTCCCGCTTCCACTGGCTGGAGGCAAGCTTT
CTAGACCAT
BO18215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFA8-RD | 528 | CG3683-PD | 1..525 | 17..541 | 2625 | 100 | Plus |
NDUFA8-RC | 528 | CG3683-PC | 1..525 | 17..541 | 2625 | 100 | Plus |
NDUFA8-RB | 528 | CG3683-PB | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFA8-RD | 666 | CG3683-RD | 68..592 | 17..541 | 2625 | 100 | Plus |
NDUFA8-RC | 683 | CG3683-RC | 85..609 | 17..541 | 2625 | 100 | Plus |
NDUFA8-RB | 668 | CG3683-RB | 70..594 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24664854..24665029 | 146..321 | 880 | 100 | Plus |
2R | 25286936 | 2R | 24665235..24665365 | 411..541 | 655 | 100 | Plus |
2R | 25286936 | 2R | 24664551..24664680 | 17..146 | 650 | 100 | Plus |
2R | 25286936 | 2R | 24665093..24665185 | 322..414 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:47:08 has no hits.
BO18215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:27 Download gff for
BO18215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3683-RC | 1..528 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:39 Download gff for
BO18215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3683-RA | 76..600 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:30 Download gff for
BO18215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..594 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:27 Download gff for
BO18215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3683-RA | 76..600 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:31 Download gff for
BO18215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..594 | 17..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:31 Download gff for
BO18215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24665237..24665365 | 413..543 | 98 | | Plus |
2R | 24664551..24664679 | 17..145 | 100 | -> | Plus |
2R | 24664854..24665029 | 146..321 | 100 | -> | Plus |
2R | 24665093..24665183 | 322..412 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:30 Download gff for
BO18215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20552074..20552202 | 17..145 | 100 | -> | Plus |
arm_2R | 20552377..20552552 | 146..321 | 100 | -> | Plus |
arm_2R | 20552616..20552706 | 322..412 | 100 | -> | Plus |
arm_2R | 20552760..20552888 | 413..543 | 98 | | Plus |
BO18215.pep Sequence
Translation from 16 to 559
> BO18215.pep
MVITNNTTLPEESELNVQELNLSSAALRAGAFHLGKQCEQANNEFMLCRQ
ELDDPRACLAEGKAVTSCALDFFRKVKKTCHEEFTQYATCLDKSSGTMAF
SHCRKTQGVFDKCIKDNFDWDRPSYGYFSRAKVIQSAREAPKKEEKVSYP
DATPGLPEDYPKPPAKYGSRFHWLEASFLDH
BO18215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFA8-PD | 175 | CG3683-PD | 1..175 | 1..175 | 947 | 100 | Plus |
NDUFA8-PC | 175 | CG3683-PC | 1..175 | 1..175 | 947 | 100 | Plus |
NDUFA8-PB | 175 | CG3683-PB | 1..175 | 1..175 | 947 | 100 | Plus |
NDUFA8-PA | 175 | CG3683-PA | 1..175 | 1..175 | 947 | 100 | Plus |