Clone BO18216 Report

Search the DGRC for BO18216

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptSyx6-RB
Protein status:BO18216.pep: full length peptide match
Sequenced Size:712

Clone Sequence Records

BO18216.3prime Sequence

710 bp (697 high quality bases) assembled on 2006-10-13

> BO18216.3prime
ATGGTCTAGAAAGCTTGCCAAAATAATAAACAAAATTATCACAAACAATA
ACAGTCCGGATAGGATGAGAATGGCGGCCCACTGTCGTTTATCATTATTC
ATGTGCAAGACTTTGGCAACTTTCTTCATGGTCGTATCCAACTTGGACTC
CGTGGTATCGAACTCGTTCCCAAAGTCGTCTAGCATGACGGCCTGCTCAT
CGAGCTCAACGCCAATTTGCCGCGAGACCGTCTTGAGGGTACCAATCGAA
TCGCTGATCATGTCTAGCTGCTCATCCTGTCCCTGGATCATACGCTGCTG
TATGGACACTGTTTCGCCCACGTACCTATGACTCGGACTGTCCATGCCGC
CGTGATGCGTCTGCCCATAGTGACTGGGACTGTCCAGGGCGTTCTCCAGC
TTGGAGTACTTGGTGCCGCTGTGGCGGGATGCTGCTGCCGCTGCCGCCGA
CATGGTCCCAGCTATGGTATTGGCCACCTGACTGCCGCTATTGATCAGCG
AGTTGCCGTTGGGACACTCCACGAGGTACGTGCGATCGTTGTGTGGATGC
TGATGGTACTCGTTGGAGTTGGAATTCGAATTGGGTATGGCAATGGAATG
ATTGTGATTGGGGCTGTGGCGATCGTTGTCGAGCAGCGGCTGGTGTGCGG
TGATGTCTCTGTCCCGGCTCCGGTTCAGGCTCATCTTATCCTTCATGTCC
ACTGATAACT

BO18216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7736-PE 1020 Syx6-RE 340..1017 696..19 3390 100 Minus
CG7736-PB 681 Syx6-RB 1..678 696..19 3390 100 Minus
CG7736-PD 972 Syx6-RD 292..969 696..19 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 682..1359 696..19 3390 100 Minus
Syx6-RB 1361 CG7736-RB 431..1108 696..19 3390 100 Minus
Syx6-RE 1945 CG7736-RE 787..1464 696..19 3390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11221026..11221629 696..93 3020 100 Minus
2R 25286936 2R 11221783..11221857 93..19 375 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:54:03 has no hits.

BO18216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:59 Download gff for BO18216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7736-PD 284..972 15..705 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:24 Download gff for BO18216.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 779..1475 9..705 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:53 Download gff for BO18216.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 779..1475 9..705 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:53 Download gff for BO18216.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11221018..11221629 93..705 99 -> Minus
2R 11221784..11221868 9..92 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:24 Download gff for BO18216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7108523..7109134 93..705 99 -> Minus
arm_2R 7109289..7109373 9..92 95   Minus

BO18216.5prime Sequence

710 bp (703 high quality bases) assembled on 2006-10-13

> BO18216.5prime
GAAGTTATCAGTCGACATGAAGGATAAGATGAGCCTGAACCGGAGCCGGG
ACAGAGACATCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGC
CCCAATCACAATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAA
CGAGTACCATCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTC
CCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATA
GCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCAC
CAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGC
AGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAA
ACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGA
CATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTG
GCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAG
TTCGATACCACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAA
AGTCTTGCACATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCC
TATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATTATTTTGGCAAGC
TTTCTAGACC

BO18216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7736-PE 1020 Syx6-RE 340..1017 17..694 3390 100 Plus
CG7736-PB 681 Syx6-RB 1..678 17..694 3390 100 Plus
CG7736-PD 972 Syx6-RD 292..969 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 682..1359 17..694 3390 100 Plus
Syx6-RB 1361 CG7736-RB 431..1108 17..694 3390 100 Plus
Syx6-RE 1945 CG7736-RE 787..1464 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11221026..11221629 17..620 3020 100 Plus
2R 25286936 2R 11221783..11221857 620..694 375 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:30:24 has no hits.

BO18216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:59 Download gff for BO18216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7736-PD 287..972 10..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:17 Download gff for BO18216.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 782..1475 10..704 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:46 Download gff for BO18216.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 782..1475 10..704 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:46 Download gff for BO18216.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11221021..11221629 10..620 99 -> Plus
2R 11221784..11221868 621..704 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:17 Download gff for BO18216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7108526..7109134 10..620 99 -> Plus
arm_2R 7109289..7109373 621..704 95   Plus

BO18216.complete Sequence

712 bp assembled on 2006-10-11

GenBank Submission: FJ634346

> BO18216.complete
GAAGTTATCAGTCGACATGAAGGATAAGATGAGCCTGAACCGGAGCCGGG
ACAGAGACATCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGC
CCCAATCACAATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAA
CGAGTACCATCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTC
CCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATA
GCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCAC
CAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGC
AGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAA
ACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGA
CATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTG
GCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAG
TTCGATACCACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAA
AGTCTTGCACATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCC
TATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATTATTTTGGCAAGC
TTTCTAGACCAT

BO18216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 972 CG7736-PD 292..969 17..694 3390 100 Plus
Syx6-RB 681 CG7736-PB 1..678 17..694 3390 100 Plus
Syx6-RE 1020 CG7736-PE 340..1017 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 682..1359 17..694 3390 100 Plus
Syx6-RB 1361 CG7736-RB 431..1108 17..694 3390 100 Plus
Syx6-RE 1945 CG7736-RE 787..1464 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11221026..11221629 17..620 3020 100 Plus
2R 25286936 2R 11221783..11221857 620..694 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:01:10 has no hits.

BO18216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:28 Download gff for BO18216.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 287..972 10..698 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:41 Download gff for BO18216.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 675..1368 10..704 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:32 Download gff for BO18216.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 787..1464 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:28 Download gff for BO18216.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 675..1368 10..704 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:56 Download gff for BO18216.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 787..1464 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:56 Download gff for BO18216.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11221026..11221629 17..620 100 -> Plus
2R 11221784..11221857 621..696 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:32 Download gff for BO18216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7108531..7109134 17..620 100 -> Plus
arm_2R 7109289..7109362 621..696 97   Plus

BO18216.pep Sequence

Translation from 16 to 712

> BO18216.pep
MKDKMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQH
PHNDRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKL
ENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDS
IGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMN
NDKRQWAAILILSGLLLFVIILFIILASFLDH

BO18216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-PB 226 CG7736-PB 1..226 1..226 1169 100 Plus
Syx6-PD 323 CG7736-PD 98..323 1..226 1169 100 Plus
Syx6-PE 339 CG7736-PE 114..339 1..226 1169 100 Plus