Clone Sequence Records
BO18216.3prime Sequence
710 bp (697 high quality bases) assembled on 2006-10-13
> BO18216.3prime
ATGGTCTAGAAAGCTTGCCAAAATAATAAACAAAATTATCACAAACAATA
ACAGTCCGGATAGGATGAGAATGGCGGCCCACTGTCGTTTATCATTATTC
ATGTGCAAGACTTTGGCAACTTTCTTCATGGTCGTATCCAACTTGGACTC
CGTGGTATCGAACTCGTTCCCAAAGTCGTCTAGCATGACGGCCTGCTCAT
CGAGCTCAACGCCAATTTGCCGCGAGACCGTCTTGAGGGTACCAATCGAA
TCGCTGATCATGTCTAGCTGCTCATCCTGTCCCTGGATCATACGCTGCTG
TATGGACACTGTTTCGCCCACGTACCTATGACTCGGACTGTCCATGCCGC
CGTGATGCGTCTGCCCATAGTGACTGGGACTGTCCAGGGCGTTCTCCAGC
TTGGAGTACTTGGTGCCGCTGTGGCGGGATGCTGCTGCCGCTGCCGCCGA
CATGGTCCCAGCTATGGTATTGGCCACCTGACTGCCGCTATTGATCAGCG
AGTTGCCGTTGGGACACTCCACGAGGTACGTGCGATCGTTGTGTGGATGC
TGATGGTACTCGTTGGAGTTGGAATTCGAATTGGGTATGGCAATGGAATG
ATTGTGATTGGGGCTGTGGCGATCGTTGTCGAGCAGCGGCTGGTGTGCGG
TGATGTCTCTGTCCCGGCTCCGGTTCAGGCTCATCTTATCCTTCATGTCC
ACTGATAACT
BO18216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7736-PE | 1020 | Syx6-RE | 340..1017 | 696..19 | 3390 | 100 | Minus |
CG7736-PB | 681 | Syx6-RB | 1..678 | 696..19 | 3390 | 100 | Minus |
CG7736-PD | 972 | Syx6-RD | 292..969 | 696..19 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 1982 | CG7736-RD | 682..1359 | 696..19 | 3390 | 100 | Minus |
Syx6-RB | 1361 | CG7736-RB | 431..1108 | 696..19 | 3390 | 100 | Minus |
Syx6-RE | 1945 | CG7736-RE | 787..1464 | 696..19 | 3390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11221026..11221629 | 696..93 | 3020 | 100 | Minus |
2R | 25286936 | 2R | 11221783..11221857 | 93..19 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:54:03 has no hits.
BO18216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:59 Download gff for
BO18216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7736-PD | 284..972 | 15..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:24 Download gff for
BO18216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 779..1475 | 9..705 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:53 Download gff for
BO18216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 779..1475 | 9..705 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:53 Download gff for
BO18216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11221018..11221629 | 93..705 | 99 | -> | Minus |
2R | 11221784..11221868 | 9..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:24 Download gff for
BO18216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7108523..7109134 | 93..705 | 99 | -> | Minus |
arm_2R | 7109289..7109373 | 9..92 | 95 | | Minus |
BO18216.5prime Sequence
710 bp (703 high quality bases) assembled on 2006-10-13
> BO18216.5prime
GAAGTTATCAGTCGACATGAAGGATAAGATGAGCCTGAACCGGAGCCGGG
ACAGAGACATCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGC
CCCAATCACAATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAA
CGAGTACCATCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTC
CCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATA
GCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCAC
CAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGC
AGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAA
ACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGA
CATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTG
GCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAG
TTCGATACCACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAA
AGTCTTGCACATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCC
TATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATTATTTTGGCAAGC
TTTCTAGACC
BO18216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7736-PE | 1020 | Syx6-RE | 340..1017 | 17..694 | 3390 | 100 | Plus |
CG7736-PB | 681 | Syx6-RB | 1..678 | 17..694 | 3390 | 100 | Plus |
CG7736-PD | 972 | Syx6-RD | 292..969 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 1982 | CG7736-RD | 682..1359 | 17..694 | 3390 | 100 | Plus |
Syx6-RB | 1361 | CG7736-RB | 431..1108 | 17..694 | 3390 | 100 | Plus |
Syx6-RE | 1945 | CG7736-RE | 787..1464 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11221026..11221629 | 17..620 | 3020 | 100 | Plus |
2R | 25286936 | 2R | 11221783..11221857 | 620..694 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:30:24 has no hits.
BO18216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:59 Download gff for
BO18216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7736-PD | 287..972 | 10..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:17 Download gff for
BO18216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 782..1475 | 10..704 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:46 Download gff for
BO18216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 782..1475 | 10..704 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:46 Download gff for
BO18216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11221021..11221629 | 10..620 | 99 | -> | Plus |
2R | 11221784..11221868 | 621..704 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:17 Download gff for
BO18216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7108526..7109134 | 10..620 | 99 | -> | Plus |
arm_2R | 7109289..7109373 | 621..704 | 95 | | Plus |
BO18216.complete Sequence
712 bp assembled on 2006-10-11
GenBank Submission: FJ634346
> BO18216.complete
GAAGTTATCAGTCGACATGAAGGATAAGATGAGCCTGAACCGGAGCCGGG
ACAGAGACATCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGC
CCCAATCACAATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAA
CGAGTACCATCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTC
CCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATA
GCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCAC
CAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGC
AGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAA
ACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGA
CATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTG
GCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAG
TTCGATACCACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAA
AGTCTTGCACATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCC
TATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATTATTTTGGCAAGC
TTTCTAGACCAT
BO18216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 972 | CG7736-PD | 292..969 | 17..694 | 3390 | 100 | Plus |
Syx6-RB | 681 | CG7736-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
Syx6-RE | 1020 | CG7736-PE | 340..1017 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 1982 | CG7736-RD | 682..1359 | 17..694 | 3390 | 100 | Plus |
Syx6-RB | 1361 | CG7736-RB | 431..1108 | 17..694 | 3390 | 100 | Plus |
Syx6-RE | 1945 | CG7736-RE | 787..1464 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11221026..11221629 | 17..620 | 3020 | 100 | Plus |
2R | 25286936 | 2R | 11221783..11221857 | 620..694 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:01:10 has no hits.
BO18216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:28 Download gff for
BO18216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 287..972 | 10..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:41 Download gff for
BO18216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 675..1368 | 10..704 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:32 Download gff for
BO18216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 787..1464 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:28 Download gff for
BO18216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 675..1368 | 10..704 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:56 Download gff for
BO18216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 787..1464 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:56 Download gff for
BO18216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11221026..11221629 | 17..620 | 100 | -> | Plus |
2R | 11221784..11221857 | 621..696 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:32 Download gff for
BO18216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7108531..7109134 | 17..620 | 100 | -> | Plus |
arm_2R | 7109289..7109362 | 621..696 | 97 | | Plus |
BO18216.pep Sequence
Translation from 16 to 712
> BO18216.pep
MKDKMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQH
PHNDRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKL
ENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDS
IGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMN
NDKRQWAAILILSGLLLFVIILFIILASFLDH
BO18216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-PB | 226 | CG7736-PB | 1..226 | 1..226 | 1169 | 100 | Plus |
Syx6-PD | 323 | CG7736-PD | 98..323 | 1..226 | 1169 | 100 | Plus |
Syx6-PE | 339 | CG7736-PE | 114..339 | 1..226 | 1169 | 100 | Plus |