Clone Sequence Records
BO18221.3prime Sequence
841 bp (742 high quality bases) assembled on 2006-10-13
> BO18221.3prime
ATGGTCTAGAAAGCTTGCCTCGCAGGCTATTTTGCCATCGAAACTACTGA
GGGCAATGGCGAATGCCTGCATGGCGCACAGGGGATAGCGATAGTCCATG
GTGAAGACGTCCTCCGAGGTGCGGCCGAACTGCATTACTATGTACTCCGG
ATCGGAGTCGTGGACCAACTGAAAGTTCTTCACCGACGCCTGGGTGACGC
GCCCATGAAAGTTGAGCACATACGATTGGGTTTCATCGTTCCACACTGGC
GTCTTATTGTGCAGCTCCACGATGTTGTCCATGTTCTTCATTTTCCATAG
GTCAAGGATGCCCTGCTGTTTGGGATCCGCCGAACTGATCTTGACACGCT
GATCGTCCTCAGTCATGCCGGGCAGTATAACAGTCATGTTGCGTGGCCCC
TTGAATCCCAAAATGTTGGTGTCATAAATGATGACGGCCAAGTCGAGTCG
AGGACTCTCTGTGCTCTCCTTGTTGCCGTTGTCAAAGACCGTGAAGGATG
TGCCAAAGACATTAGAGCGCAGTTTGCCACAGAAGCCATCGGCATTGCGA
GACAAATCCGTGGGATCGCAGCTGACAATGTAGTTGGATGTCTTGCTCTT
CTTGCGTTTGCGACCTCCCAGCAGAAATATCTTCTTGCCGTAGTCACGTT
CCAGATGCAAGTAGTAGATGGGAAAGAGGCCGCGGTCCATGCCCTTCCTG
TCCCGCGTAATGCGGCACTTGTAAAGCACTCCCTGTGGCGCTGGTTGCAT
CACGAACTGGTCGATAATTGCCAATGACATCTCCCTCGGACTCGCCGCCA
GTTCCGTTCCCCCGTCCGTTGCTGCTGCCGTCCAGCGTTTG
BO18221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9398-PA | 1332 | king-tubby-RA | 582..1329 | 766..19 | 3715 | 99.8 | Minus |
CG9398-PB | 1383 | king-tubby-RB | 633..1380 | 766..19 | 3715 | 99.8 | Minus |
CG9398-PA | 1332 | king-tubby-RA | 537..582 | 812..767 | 205 | 97.8 | Minus |
CG9398-PB | 1383 | king-tubby-RB | 588..633 | 812..767 | 205 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-RC | 2523 | CG9398-RC | 1236..2055 | 839..19 | 4005 | 99.4 | Minus |
ktub-RB | 2496 | CG9398-RB | 1209..2028 | 839..19 | 4005 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21122968..21123236 | 287..19 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 21122245..21122470 | 839..613 | 1010 | 97.4 | Minus |
2R | 25286936 | 2R | 21122524..21122717 | 616..423 | 970 | 100 | Minus |
2R | 25286936 | 2R | 21122774..21122911 | 423..286 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:43:39 has no hits.
BO18221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:00 Download gff for
BO18221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9398-PB | 560..1383 | 16..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:04 Download gff for
BO18221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 1208..2038 | 8..841 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:40 Download gff for
BO18221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 1208..2038 | 8..841 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:40 Download gff for
BO18221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21122774..21122911 | 286..423 | 100 | -> | Minus |
2R | 21122970..21123246 | 8..285 | 98 | | Minus |
2R | 21122244..21122468 | 615..841 | 97 | -> | Minus |
2R | 21122526..21122716 | 424..614 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:04 Download gff for
BO18221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17010031..17010221 | 424..614 | 100 | -> | Minus |
arm_2R | 17010279..17010416 | 286..423 | 100 | -> | Minus |
arm_2R | 17010475..17010751 | 8..285 | 98 | | Minus |
arm_2R | 17009749..17009973 | 615..841 | 97 | -> | Minus |
BO18221.5prime Sequence
767 bp (764 high quality bases) assembled on 2006-10-13
> BO18221.5prime
GAAGTTATCAGTCGACATGTCCGGAATCAACAGTCGTAATCAGAAAATGG
AACAGCAGCGCCAGCTGATGGAGGCCTACATCCGGCAGAAGAGAGCCTCG
CCGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGG
GATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGT
TCATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCC
GGCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAA
CATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGA
TCTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATT
GAGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCA
GAAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATG
ACTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGC
ATGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGG
GACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATA
TCGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGC
CGCATTACGCGGGACAGGAAAGGCATGGACCGCGGCCTCTTTCCCATCTA
CTACTTGCATCTGGAAC
BO18221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9398-PB | 1383 | king-tubby-RB | 1..751 | 17..767 | 3730 | 99.8 | Plus |
CG9398-PA | 1332 | king-tubby-RA | 1..700 | 68..767 | 3475 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-RB | 2496 | CG9398-RB | 649..1399 | 17..767 | 3740 | 99.9 | Plus |
ktub-RC | 2523 | CG9398-RC | 991..1426 | 332..767 | 2165 | 99.8 | Plus |
ktub-RC | 2523 | CG9398-RC | 649..964 | 17..332 | 1580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21122000..21122435 | 332..767 | 2165 | 99.8 | Plus |
2R | 25286936 | 2R | 21121626..21121903 | 55..332 | 1390 | 100 | Plus |
2R | 25286936 | 2R | 21102576..21102617 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:30:47 has no hits.
BO18221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:01 Download gff for
BO18221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9398-PB | 1..751 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:19 Download gff for
BO18221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 649..1399 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:48 Download gff for
BO18221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 649..1399 | 17..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:48 Download gff for
BO18221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21121630..21121903 | 59..332 | 100 | -> | Plus |
2R | 21102576..21102617 | 17..58 | 100 | -> | Plus |
2R | 21122001..21122435 | 333..767 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:19 Download gff for
BO18221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16990081..16990122 | 17..58 | 100 | -> | Plus |
arm_2R | 17009135..17009408 | 59..332 | 100 | -> | Plus |
arm_2R | 17009506..17009940 | 333..767 | 99 | | Plus |
BO18221.complete Sequence
1414 bp assembled on 2006-10-11
GenBank Submission: FJ634347
> BO18221.complete
GAAGTTATCAGTCGACATGTCCGGAATCAACAGTCGTAATCAGAAAATGG
AACAGCAGCGCCAGCTGATGGAGGCCTACATCCGGCAGAAGAGAGCCTCG
CCGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGG
GATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGT
TCATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCC
GGCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAA
CATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGA
TCTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATT
GAGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCA
GAAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATG
ACTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGC
ATGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGG
GACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATA
TCGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGC
CGCATTACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTA
CTACTTGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAG
GTCGCAAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGAT
CCCACGGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTC
TAATGTCTTTGGCACATCCTTCACGGTCTTTGACAACGGCAACAAGGAGA
GCACAGAGAGTCCTCGACTCGACTTGGCCGTCATCATTTATGACACCAAC
ATTTTGGGATTCAAGGGGCCACGCAACATGACTGTTATACTGCCCGGCAT
GACTGAGGACGATCAGCGTGTCAAGATCAGTTCGGCGGATCCCAAACAGC
AGGGCATCCTTGACCTATGGAAAATGAAGAACATGGACAACATCGTGGAG
CTGCACAATAAGACGCCAGTGTGGAACGATGAAACCCAATCGTATGTGCT
CAACTTTCATGGGCGCGTCACCCAGGCGTCGGTGAAGAACTTTCAGTTGG
TCCACGACTCCGATCCGGAGTACATAGTAATGCAGTTCGGCCGCACCTCG
GAGGACGTCTTCACCATGGACTATCGCTATCCCCTGTGCGCCATGCAGGC
ATTCGCCATTGCCCTCAGTAGTTTCGATGGCAAAATAGCCTGCGAGGCAA
GCTTTCTAGACCAT
BO18221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-RB | 1383 | CG9398-PB | 1..1380 | 17..1396 | 6900 | 100 | Plus |
ktub-RC | 1410 | CG9398-PC | 343..1407 | 332..1396 | 5325 | 100 | Plus |
ktub-RC | 1410 | CG9398-PC | 1..316 | 17..332 | 1580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-RB | 2496 | CG9398-RB | 649..2028 | 17..1396 | 6900 | 100 | Plus |
ktub-RC | 2523 | CG9398-RC | 991..2055 | 332..1396 | 5325 | 100 | Plus |
ktub-RC | 2523 | CG9398-RC | 649..964 | 17..332 | 1580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21122000..21122470 | 332..802 | 2355 | 100 | Plus |
2R | 25286936 | 2R | 21121626..21121903 | 55..332 | 1390 | 100 | Plus |
2R | 25286936 | 2R | 21122968..21123236 | 1128..1396 | 1345 | 100 | Plus |
2R | 25286936 | 2R | 21122524..21122717 | 799..992 | 970 | 100 | Plus |
2R | 25286936 | 2R | 21122774..21122911 | 992..1129 | 690 | 100 | Plus |
2R | 25286936 | 2R | 21102576..21102617 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:16:39 has no hits.
BO18221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:30 Download gff for
BO18221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
king-tubby-RB | 1..1383 | 17..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:27 Download gff for
BO18221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
king-tubby-RB | 647..2026 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:55 Download gff for
BO18221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 649..2028 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:30 Download gff for
BO18221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
king-tubby-RB | 647..2036 | 17..1407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:31 Download gff for
BO18221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 649..2028 | 17..1398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:31 Download gff for
BO18221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21102576..21102617 | 17..58 | 100 | -> | Plus |
2R | 21121630..21121903 | 59..332 | 100 | -> | Plus |
2R | 21122001..21122468 | 333..800 | 100 | -> | Plus |
2R | 21122526..21122716 | 801..991 | 100 | -> | Plus |
2R | 21122774..21122911 | 992..1129 | 100 | -> | Plus |
2R | 21122970..21123236 | 1130..1398 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:55 Download gff for
BO18221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16990081..16990122 | 17..58 | 100 | -> | Plus |
arm_2R | 17009135..17009408 | 59..332 | 100 | -> | Plus |
arm_2R | 17010475..17010741 | 1130..1398 | 99 | | Plus |
arm_2R | 17009506..17009973 | 333..800 | 100 | -> | Plus |
arm_2R | 17010031..17010221 | 801..991 | 100 | -> | Plus |
arm_2R | 17010279..17010416 | 992..1129 | 100 | -> | Plus |
BO18221.pep Sequence
Translation from 16 to 1414
> BO18221.pep
MSGINSRNQKMEQQRQLMEAYIRQKRASPGMVQASDLQINRPMSGMRSNS
RELHAYDGPMQFISSPQNPDQILTNGSPGGINPVAMNTSRNHSNNMRSLS
TINQEADLIEEISSHELEDEESSPVTVIEQHQQSASHSANSTQSQKPRAR
QHSFSDNLDEDDYTNRNVAGAAPVRPAGMASSPYKDATLDGSSNGTGNGT
GGESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLE
RDYGKKIFLLGGRKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGT
SFTVFDNGNKESTESPRLDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQ
RVKISSADPKQQGILDLWKMKNMDNIVELHNKTPVWNDETQSYVLNFHGR
VTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIAL
SSFDGKIACEASFLDH
BO18221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-PB | 460 | CG9398-PB | 1..460 | 1..460 | 2403 | 100 | Plus |
ktub-PC | 469 | CG9398-PC | 1..469 | 1..460 | 2383 | 98.1 | Plus |
Tusp-PG | 1430 | CG5586-PG | 1354..1424 | 379..452 | 195 | 50 | Plus |
Tusp-PE | 1432 | CG5586-PE | 1356..1426 | 379..452 | 195 | 50 | Plus |
Tusp-PD | 1432 | CG5586-PD | 1356..1426 | 379..452 | 195 | 50 | Plus |