Clone BO18221 Report

Search the DGRC for BO18221

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:21
Vector:pDNR-Dual
Associated Gene/Transcriptking-tubby-RB
Protein status:BO18221.pep: validated full length
Sequenced Size:1414

Clone Sequence Records

BO18221.3prime Sequence

841 bp (742 high quality bases) assembled on 2006-10-13

> BO18221.3prime
ATGGTCTAGAAAGCTTGCCTCGCAGGCTATTTTGCCATCGAAACTACTGA
GGGCAATGGCGAATGCCTGCATGGCGCACAGGGGATAGCGATAGTCCATG
GTGAAGACGTCCTCCGAGGTGCGGCCGAACTGCATTACTATGTACTCCGG
ATCGGAGTCGTGGACCAACTGAAAGTTCTTCACCGACGCCTGGGTGACGC
GCCCATGAAAGTTGAGCACATACGATTGGGTTTCATCGTTCCACACTGGC
GTCTTATTGTGCAGCTCCACGATGTTGTCCATGTTCTTCATTTTCCATAG
GTCAAGGATGCCCTGCTGTTTGGGATCCGCCGAACTGATCTTGACACGCT
GATCGTCCTCAGTCATGCCGGGCAGTATAACAGTCATGTTGCGTGGCCCC
TTGAATCCCAAAATGTTGGTGTCATAAATGATGACGGCCAAGTCGAGTCG
AGGACTCTCTGTGCTCTCCTTGTTGCCGTTGTCAAAGACCGTGAAGGATG
TGCCAAAGACATTAGAGCGCAGTTTGCCACAGAAGCCATCGGCATTGCGA
GACAAATCCGTGGGATCGCAGCTGACAATGTAGTTGGATGTCTTGCTCTT
CTTGCGTTTGCGACCTCCCAGCAGAAATATCTTCTTGCCGTAGTCACGTT
CCAGATGCAAGTAGTAGATGGGAAAGAGGCCGCGGTCCATGCCCTTCCTG
TCCCGCGTAATGCGGCACTTGTAAAGCACTCCCTGTGGCGCTGGTTGCAT
CACGAACTGGTCGATAATTGCCAATGACATCTCCCTCGGACTCGCCGCCA
GTTCCGTTCCCCCGTCCGTTGCTGCTGCCGTCCAGCGTTTG

BO18221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9398-PA 1332 king-tubby-RA 582..1329 766..19 3715 99.8 Minus
CG9398-PB 1383 king-tubby-RB 633..1380 766..19 3715 99.8 Minus
CG9398-PA 1332 king-tubby-RA 537..582 812..767 205 97.8 Minus
CG9398-PB 1383 king-tubby-RB 588..633 812..767 205 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-RC 2523 CG9398-RC 1236..2055 839..19 4005 99.4 Minus
ktub-RB 2496 CG9398-RB 1209..2028 839..19 4005 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21122968..21123236 287..19 1345 100 Minus
2R 25286936 2R 21122245..21122470 839..613 1010 97.4 Minus
2R 25286936 2R 21122524..21122717 616..423 970 100 Minus
2R 25286936 2R 21122774..21122911 423..286 690 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:43:39 has no hits.

BO18221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:00 Download gff for BO18221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9398-PB 560..1383 16..841 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:04 Download gff for BO18221.3prime
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 1208..2038 8..841 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:40 Download gff for BO18221.3prime
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 1208..2038 8..841 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:40 Download gff for BO18221.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21122774..21122911 286..423 100 -> Minus
2R 21122970..21123246 8..285 98   Minus
2R 21122244..21122468 615..841 97 -> Minus
2R 21122526..21122716 424..614 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:04 Download gff for BO18221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17010031..17010221 424..614 100 -> Minus
arm_2R 17010279..17010416 286..423 100 -> Minus
arm_2R 17010475..17010751 8..285 98   Minus
arm_2R 17009749..17009973 615..841 97 -> Minus

BO18221.5prime Sequence

767 bp (764 high quality bases) assembled on 2006-10-13

> BO18221.5prime
GAAGTTATCAGTCGACATGTCCGGAATCAACAGTCGTAATCAGAAAATGG
AACAGCAGCGCCAGCTGATGGAGGCCTACATCCGGCAGAAGAGAGCCTCG
CCGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGG
GATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGT
TCATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCC
GGCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAA
CATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGA
TCTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATT
GAGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCA
GAAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATG
ACTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGC
ATGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGG
GACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATA
TCGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGC
CGCATTACGCGGGACAGGAAAGGCATGGACCGCGGCCTCTTTCCCATCTA
CTACTTGCATCTGGAAC

BO18221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9398-PB 1383 king-tubby-RB 1..751 17..767 3730 99.8 Plus
CG9398-PA 1332 king-tubby-RA 1..700 68..767 3475 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-RB 2496 CG9398-RB 649..1399 17..767 3740 99.9 Plus
ktub-RC 2523 CG9398-RC 991..1426 332..767 2165 99.8 Plus
ktub-RC 2523 CG9398-RC 649..964 17..332 1580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21122000..21122435 332..767 2165 99.8 Plus
2R 25286936 2R 21121626..21121903 55..332 1390 100 Plus
2R 25286936 2R 21102576..21102617 17..58 210 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:30:47 has no hits.

BO18221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:01 Download gff for BO18221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9398-PB 1..751 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:19 Download gff for BO18221.5prime
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 649..1399 17..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:48 Download gff for BO18221.5prime
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 649..1399 17..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:48 Download gff for BO18221.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21121630..21121903 59..332 100 -> Plus
2R 21102576..21102617 17..58 100 -> Plus
2R 21122001..21122435 333..767 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:19 Download gff for BO18221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16990081..16990122 17..58 100 -> Plus
arm_2R 17009135..17009408 59..332 100 -> Plus
arm_2R 17009506..17009940 333..767 99   Plus

BO18221.complete Sequence

1414 bp assembled on 2006-10-11

GenBank Submission: FJ634347

> BO18221.complete
GAAGTTATCAGTCGACATGTCCGGAATCAACAGTCGTAATCAGAAAATGG
AACAGCAGCGCCAGCTGATGGAGGCCTACATCCGGCAGAAGAGAGCCTCG
CCGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGG
GATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGT
TCATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCC
GGCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAA
CATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGA
TCTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATT
GAGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCA
GAAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATG
ACTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGC
ATGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGG
GACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATA
TCGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGC
CGCATTACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTA
CTACTTGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAG
GTCGCAAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGAT
CCCACGGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTC
TAATGTCTTTGGCACATCCTTCACGGTCTTTGACAACGGCAACAAGGAGA
GCACAGAGAGTCCTCGACTCGACTTGGCCGTCATCATTTATGACACCAAC
ATTTTGGGATTCAAGGGGCCACGCAACATGACTGTTATACTGCCCGGCAT
GACTGAGGACGATCAGCGTGTCAAGATCAGTTCGGCGGATCCCAAACAGC
AGGGCATCCTTGACCTATGGAAAATGAAGAACATGGACAACATCGTGGAG
CTGCACAATAAGACGCCAGTGTGGAACGATGAAACCCAATCGTATGTGCT
CAACTTTCATGGGCGCGTCACCCAGGCGTCGGTGAAGAACTTTCAGTTGG
TCCACGACTCCGATCCGGAGTACATAGTAATGCAGTTCGGCCGCACCTCG
GAGGACGTCTTCACCATGGACTATCGCTATCCCCTGTGCGCCATGCAGGC
ATTCGCCATTGCCCTCAGTAGTTTCGATGGCAAAATAGCCTGCGAGGCAA
GCTTTCTAGACCAT

BO18221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-RB 1383 CG9398-PB 1..1380 17..1396 6900 100 Plus
ktub-RC 1410 CG9398-PC 343..1407 332..1396 5325 100 Plus
ktub-RC 1410 CG9398-PC 1..316 17..332 1580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-RB 2496 CG9398-RB 649..2028 17..1396 6900 100 Plus
ktub-RC 2523 CG9398-RC 991..2055 332..1396 5325 100 Plus
ktub-RC 2523 CG9398-RC 649..964 17..332 1580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21122000..21122470 332..802 2355 100 Plus
2R 25286936 2R 21121626..21121903 55..332 1390 100 Plus
2R 25286936 2R 21122968..21123236 1128..1396 1345 100 Plus
2R 25286936 2R 21122524..21122717 799..992 970 100 Plus
2R 25286936 2R 21122774..21122911 992..1129 690 100 Plus
2R 25286936 2R 21102576..21102617 17..58 210 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:16:39 has no hits.

BO18221.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:30 Download gff for BO18221.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 1..1383 17..1399 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:27 Download gff for BO18221.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 647..2026 17..1398 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:55 Download gff for BO18221.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 649..2028 17..1398 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:30 Download gff for BO18221.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 647..2036 17..1407 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:31 Download gff for BO18221.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 649..2028 17..1398 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:31 Download gff for BO18221.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21102576..21102617 17..58 100 -> Plus
2R 21121630..21121903 59..332 100 -> Plus
2R 21122001..21122468 333..800 100 -> Plus
2R 21122526..21122716 801..991 100 -> Plus
2R 21122774..21122911 992..1129 100 -> Plus
2R 21122970..21123236 1130..1398 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:55 Download gff for BO18221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16990081..16990122 17..58 100 -> Plus
arm_2R 17009135..17009408 59..332 100 -> Plus
arm_2R 17010475..17010741 1130..1398 99   Plus
arm_2R 17009506..17009973 333..800 100 -> Plus
arm_2R 17010031..17010221 801..991 100 -> Plus
arm_2R 17010279..17010416 992..1129 100 -> Plus

BO18221.pep Sequence

Translation from 16 to 1414

> BO18221.pep
MSGINSRNQKMEQQRQLMEAYIRQKRASPGMVQASDLQINRPMSGMRSNS
RELHAYDGPMQFISSPQNPDQILTNGSPGGINPVAMNTSRNHSNNMRSLS
TINQEADLIEEISSHELEDEESSPVTVIEQHQQSASHSANSTQSQKPRAR
QHSFSDNLDEDDYTNRNVAGAAPVRPAGMASSPYKDATLDGSSNGTGNGT
GGESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLE
RDYGKKIFLLGGRKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGT
SFTVFDNGNKESTESPRLDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQ
RVKISSADPKQQGILDLWKMKNMDNIVELHNKTPVWNDETQSYVLNFHGR
VTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIAL
SSFDGKIACEASFLDH

BO18221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-PB 460 CG9398-PB 1..460 1..460 2403 100 Plus
ktub-PC 469 CG9398-PC 1..469 1..460 2383 98.1 Plus
Tusp-PG 1430 CG5586-PG 1354..1424 379..452 195 50 Plus
Tusp-PE 1432 CG5586-PE 1356..1426 379..452 195 50 Plus
Tusp-PD 1432 CG5586-PD 1356..1426 379..452 195 50 Plus