Clone BO18222 Report

Search the DGRC for BO18222

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS33-RA
Protein status:BO18222.pep: validated full length
Sequenced Size:373

Clone Sequence Records

BO18222.3prime Sequence

371 bp (371 high quality bases) assembled on 2006-10-13

> BO18222.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTGAGGCCCGCTTGCCCTCGCCCTTCT
TGGGAGGCGCCTTGCCGCGCAGCTTGCGCAGACGCTTCATCTCCTCCTTG
AAGTCCTGGTGCTCATCGCGGAACAGTCCGTAGTCGCGAAGGTTCTTCAT
CAGCAAGTGCGTCTCCACGTGCCGCGGATACCAGTTGATCACGTAGTCCC
GTTTGTGAATTGGTTCCTCCGAGAACATGCGAACCACCTTCATGGACTTC
TCGTTTGTGGTGCGAGCCACTTCGCCGAAAATGCGATTTGAGAGGTAGTT
CATCCGGCGAGCATACTGCGTGCCGACCTTAATCAGCTCCGTGTACTTGT
GGGACATGTCGACTGATAACT

BO18222.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10406-PA 342 mRpS33-RA 1..339 357..19 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-RA 491 CG10406-RA 118..456 357..19 1695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16436080..16436300 19..239 1105 100 Plus
3R 32079331 3R 16436359..16436480 236..357 610 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:36:29 has no hits.

BO18222.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:01 Download gff for BO18222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10406-PA 1..342 18..357 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:31 Download gff for BO18222.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..456 19..357 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:55 Download gff for BO18222.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..456 19..357 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:55 Download gff for BO18222.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16436080..16436298 19..237 100 <- Plus
3R 16436361..16436480 238..357 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:31 Download gff for BO18222.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12261802..12262020 19..237 100 <- Plus
arm_3R 12262083..12262202 238..357 100   Plus

BO18222.5prime Sequence

371 bp (371 high quality bases) assembled on 2006-10-13

> BO18222.5prime
GAAGTTATCAGTCGACATGTCCCACAAGTACACGGAGCTGATTAAGGTCG
GCACGCAGTATGCTCGCCGGATGAACTACCTCTCAAATCGCATTTTCGGC
GAAGTGGCTCGCACCACAAACGAGAAGTCCATGAAGGTGGTTCGCATGTT
CTCGGAGGAACCAATTCACAAACGGGACTACGTGATCAACTGGTATCCGC
GGCACGTGGAGACGCACTTGCTGATGAAGAACCTTCGCGACTACGGACTG
TTCCGCGATGAGCACCAGGACTTCAAGGAGGAGATGAAGCGTCTGCGCAA
GCTGCGCGGCAAGGCGCCTCCCAAGAAGGGCGAGGGCAAGCGGGCCTCAA
AGAAGGCAAGCTTTCTAGACC

BO18222.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10406-PA 342 mRpS33-RA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-RA 491 CG10406-RA 118..456 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16436080..16436300 355..135 1105 100 Minus
3R 32079331 3R 16436359..16436480 138..17 610 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:22:20 has no hits.

BO18222.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:02 Download gff for BO18222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10406-PA 1..342 17..356 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:37 Download gff for BO18222.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..456 17..355 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:07 Download gff for BO18222.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..456 17..355 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:07 Download gff for BO18222.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16436080..16436298 137..355 100 <- Minus
3R 16436361..16436480 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:37 Download gff for BO18222.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12261802..12262020 137..355 100 <- Minus
arm_3R 12262083..12262202 17..136 100   Minus

BO18222.complete Sequence

373 bp assembled on 2006-10-11

GenBank Submission: FJ634348

> BO18222.complete
GAAGTTATCAGTCGACATGTCCCACAAGTACACGGAGCTGATTAAGGTCG
GCACGCAGTATGCTCGCCGGATGAACTACCTCTCAAATCGCATTTTCGGC
GAAGTGGCTCGCACCACAAACGAGAAGTCCATGAAGGTGGTTCGCATGTT
CTCGGAGGAACCAATTCACAAACGGGACTACGTGATCAACTGGTATCCGC
GGCACGTGGAGACGCACTTGCTGATGAAGAACCTTCGCGACTACGGACTG
TTCCGCGATGAGCACCAGGACTTCAAGGAGGAGATGAAGCGTCTGCGCAA
GCTGCGCGGCAAGGCGCCTCCCAAGAAGGGCGAGGGCAAGCGGGCCTCAA
AGAAGGCAAGCTTTCTAGACCAT

BO18222.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-RA 342 CG10406-PA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-RA 491 CG10406-RA 118..456 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16436080..16436300 355..135 1105 100 Minus
3R 32079331 3R 16436359..16436480 138..17 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:32:13 has no hits.

BO18222.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:31 Download gff for BO18222.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 1..342 17..356 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:46 Download gff for BO18222.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 114..452 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:54 Download gff for BO18222.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..456 17..357 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:31 Download gff for BO18222.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 114..452 17..355 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:45 Download gff for BO18222.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS33-RA 118..456 17..357 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:45 Download gff for BO18222.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16436078..16436298 137..357 99 <- Minus
3R 16436361..16436480 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:54 Download gff for BO18222.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12261800..12262020 137..357 99 <- Minus
arm_3R 12262083..12262202 17..136 100   Minus

BO18222.pep Sequence

Translation from 16 to 373

> BO18222.pep
MSHKYTELIKVGTQYARRMNYLSNRIFGEVARTTNEKSMKVVRMFSEEPI
HKRDYVINWYPRHVETHLLMKNLRDYGLFRDEHQDFKEEMKRLRKLRGKA
PPKKGEGKRASKKASFLDH

BO18222.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS33-PA 113 CG10406-PA 1..113 1..113 598 100 Plus