Clone Sequence Records
BO18222.3prime Sequence
371 bp (371 high quality bases) assembled on 2006-10-13
> BO18222.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTGAGGCCCGCTTGCCCTCGCCCTTCT
TGGGAGGCGCCTTGCCGCGCAGCTTGCGCAGACGCTTCATCTCCTCCTTG
AAGTCCTGGTGCTCATCGCGGAACAGTCCGTAGTCGCGAAGGTTCTTCAT
CAGCAAGTGCGTCTCCACGTGCCGCGGATACCAGTTGATCACGTAGTCCC
GTTTGTGAATTGGTTCCTCCGAGAACATGCGAACCACCTTCATGGACTTC
TCGTTTGTGGTGCGAGCCACTTCGCCGAAAATGCGATTTGAGAGGTAGTT
CATCCGGCGAGCATACTGCGTGCCGACCTTAATCAGCTCCGTGTACTTGT
GGGACATGTCGACTGATAACT
BO18222.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10406-PA | 342 | mRpS33-RA | 1..339 | 357..19 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-RA | 491 | CG10406-RA | 118..456 | 357..19 | 1695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16436080..16436300 | 19..239 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 16436359..16436480 | 236..357 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:36:29 has no hits.
BO18222.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:01 Download gff for
BO18222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10406-PA | 1..342 | 18..357 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:31 Download gff for
BO18222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..456 | 19..357 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:55 Download gff for
BO18222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..456 | 19..357 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:55 Download gff for
BO18222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16436080..16436298 | 19..237 | 100 | <- | Plus |
3R | 16436361..16436480 | 238..357 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:31 Download gff for
BO18222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12261802..12262020 | 19..237 | 100 | <- | Plus |
arm_3R | 12262083..12262202 | 238..357 | 100 | | Plus |
BO18222.5prime Sequence
371 bp (371 high quality bases) assembled on 2006-10-13
> BO18222.5prime
GAAGTTATCAGTCGACATGTCCCACAAGTACACGGAGCTGATTAAGGTCG
GCACGCAGTATGCTCGCCGGATGAACTACCTCTCAAATCGCATTTTCGGC
GAAGTGGCTCGCACCACAAACGAGAAGTCCATGAAGGTGGTTCGCATGTT
CTCGGAGGAACCAATTCACAAACGGGACTACGTGATCAACTGGTATCCGC
GGCACGTGGAGACGCACTTGCTGATGAAGAACCTTCGCGACTACGGACTG
TTCCGCGATGAGCACCAGGACTTCAAGGAGGAGATGAAGCGTCTGCGCAA
GCTGCGCGGCAAGGCGCCTCCCAAGAAGGGCGAGGGCAAGCGGGCCTCAA
AGAAGGCAAGCTTTCTAGACC
BO18222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10406-PA | 342 | mRpS33-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-RA | 491 | CG10406-RA | 118..456 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16436080..16436300 | 355..135 | 1105 | 100 | Minus |
3R | 32079331 | 3R | 16436359..16436480 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:22:20 has no hits.
BO18222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:02 Download gff for
BO18222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10406-PA | 1..342 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:37 Download gff for
BO18222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..456 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:07 Download gff for
BO18222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..456 | 17..355 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:07 Download gff for
BO18222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16436080..16436298 | 137..355 | 100 | <- | Minus |
3R | 16436361..16436480 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:37 Download gff for
BO18222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12261802..12262020 | 137..355 | 100 | <- | Minus |
arm_3R | 12262083..12262202 | 17..136 | 100 | | Minus |
BO18222.complete Sequence
373 bp assembled on 2006-10-11
GenBank Submission: FJ634348
> BO18222.complete
GAAGTTATCAGTCGACATGTCCCACAAGTACACGGAGCTGATTAAGGTCG
GCACGCAGTATGCTCGCCGGATGAACTACCTCTCAAATCGCATTTTCGGC
GAAGTGGCTCGCACCACAAACGAGAAGTCCATGAAGGTGGTTCGCATGTT
CTCGGAGGAACCAATTCACAAACGGGACTACGTGATCAACTGGTATCCGC
GGCACGTGGAGACGCACTTGCTGATGAAGAACCTTCGCGACTACGGACTG
TTCCGCGATGAGCACCAGGACTTCAAGGAGGAGATGAAGCGTCTGCGCAA
GCTGCGCGGCAAGGCGCCTCCCAAGAAGGGCGAGGGCAAGCGGGCCTCAA
AGAAGGCAAGCTTTCTAGACCAT
BO18222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-RA | 342 | CG10406-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-RA | 491 | CG10406-RA | 118..456 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16436080..16436300 | 355..135 | 1105 | 100 | Minus |
3R | 32079331 | 3R | 16436359..16436480 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:32:13 has no hits.
BO18222.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:31 Download gff for
BO18222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 1..342 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:46 Download gff for
BO18222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 114..452 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:54 Download gff for
BO18222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..456 | 17..357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:31 Download gff for
BO18222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 114..452 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:45 Download gff for
BO18222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS33-RA | 118..456 | 17..357 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:45 Download gff for
BO18222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16436078..16436298 | 137..357 | 99 | <- | Minus |
3R | 16436361..16436480 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:54 Download gff for
BO18222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12261800..12262020 | 137..357 | 99 | <- | Minus |
arm_3R | 12262083..12262202 | 17..136 | 100 | | Minus |
BO18222.pep Sequence
Translation from 16 to 373
> BO18222.pep
MSHKYTELIKVGTQYARRMNYLSNRIFGEVARTTNEKSMKVVRMFSEEPI
HKRDYVINWYPRHVETHLLMKNLRDYGLFRDEHQDFKEEMKRLRKLRGKA
PPKKGEGKRASKKASFLDH
BO18222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS33-PA | 113 | CG10406-PA | 1..113 | 1..113 | 598 | 100 | Plus |