Clone Sequence Records
BO18223.3prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO18223.3prime
ATGGTCTAGAAAGCTTGCCTTGCATGGATCCCACAGCATAAGTCCTTTTC
CGGGGCAGTCGGGTGAGCGGATCACGTCGCACTCCTTCGGATTGCAATAG
CATTTGAGGCCATTTACCACGTGGTTGCTGCCGCCAGATGCTGCCATAAC
CAGTAGCAGATAGCACCACAAGTAGATGAGCAGCGCGCTCACGTTCAGGC
GGCCAAAATAACTTCCGTTCGAGCGCATCCTAAGCGGAAGCTTGGCATTG
TTGTGCTGCTGTTTGCCAGCGAGCCCCCTCTTTCGCTCCCCCTGCGACGA
CCTTGTGCGTACATCCTGCTCCAGGACCACGCCCCTCCGCCCCACGCCTC
TGGCACTTCCGCCCATGTCGACTGATAACT
BO18223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13253-PA | 351 | CG13253-RA | 1..348 | 366..19 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RB | 2737 | CG13253-RB | 357..704 | 366..19 | 1740 | 100 | Minus |
cmpy-RD | 1638 | CG13253-RD | 373..719 | 366..20 | 1735 | 100 | Minus |
cmpy-RC | 1622 | CG13253-RC | 357..703 | 366..20 | 1735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20716798..20717145 | 19..366 | 1740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:08:23 has no hits.
BO18223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:02 Download gff for
BO18223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-PA | 1..351 | 15..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:09 Download gff for
BO18223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..708 | 14..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:06 Download gff for
BO18223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..708 | 14..366 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:06 Download gff for
BO18223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20716794..20717145 | 14..366 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:09 Download gff for
BO18223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20709894..20710245 | 14..366 | 99 | | Plus |
BO18223.5prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO18223.5prime
GAAGTTATCAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGG
GCGTGGTCCTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGA
AAGAGGGGGCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCT
TAGGATGCGCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGC
TGCTCATCTACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGC
GGCAGCAACCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGA
GTGCGACGTGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGT
GGGATCCATGCAAGGCAAGCTTTCTAGACC
BO18223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13253-PA | 351 | CG13253-RA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RB | 2737 | CG13253-RB | 357..704 | 17..364 | 1740 | 100 | Plus |
cmpy-RD | 1638 | CG13253-RD | 373..719 | 17..363 | 1735 | 100 | Plus |
cmpy-RC | 1622 | CG13253-RC | 357..703 | 17..363 | 1735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20716798..20717145 | 364..17 | 1740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:18:01 has no hits.
BO18223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:03 Download gff for
BO18223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-PA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:07 Download gff for
BO18223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..708 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:19 Download gff for
BO18223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..708 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:19 Download gff for
BO18223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20716794..20717145 | 17..369 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:07 Download gff for
BO18223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20709894..20710245 | 17..369 | 99 | | Minus |
BO18223.complete Sequence
382 bp assembled on 2006-10-11
GenBank Submission: FJ634349
> BO18223.complete
GAAGTTATCAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGG
GCGTGGTCCTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGA
AAGAGGGGGCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCT
TAGGATGCGCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGC
TGCTCATCTACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGC
GGCAGCAACCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGA
GTGCGACGTGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGT
GGGATCCATGCAAGGCAAGCTTTCTAGACCAT
BO18223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RB | 351 | CG13253-PB | 1..348 | 17..364 | 1740 | 100 | Plus |
cmpy-RD | 822 | CG13253-PD | 1..347 | 17..363 | 1735 | 100 | Plus |
cmpy-RC | 822 | CG13253-PC | 1..347 | 17..363 | 1735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RB | 2737 | CG13253-RB | 357..704 | 17..364 | 1740 | 100 | Plus |
cmpy-RD | 1638 | CG13253-RD | 373..719 | 17..363 | 1735 | 100 | Plus |
cmpy-RC | 1622 | CG13253-RC | 357..703 | 17..363 | 1735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20716798..20717145 | 364..17 | 1740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:34 has no hits.
BO18223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:03 Download gff for
BO18223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RB | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:17 Download gff for
BO18223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RB | 355..706 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:34 Download gff for
BO18223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..704 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:04 Download gff for
BO18223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RB | 355..706 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:37 Download gff for
BO18223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..704 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:37 Download gff for
BO18223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20716796..20717145 | 17..366 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:34 Download gff for
BO18223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20709896..20710245 | 17..366 | 99 | | Minus |
BO18223.pep Sequence
Translation from 16 to 382
> BO18223.pep
MGGSARGVGRRGVVLEQDVRTRSSQGERKRGLAGKQQHNNAKLPLRMRSN
GSYFGRLNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIR
SPDCPGKGLMLWDPCKASFLDH
BO18223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-PB | 116 | CG13253-PB | 1..116 | 1..116 | 627 | 100 | Plus |
cmpy-PD | 273 | CG13253-PD | 1..116 | 1..116 | 627 | 100 | Plus |
cmpy-PC | 273 | CG13253-PC | 1..116 | 1..116 | 627 | 100 | Plus |