Clone BO18223 Report

Search the DGRC for BO18223

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG13253-RB
Protein status:BO18223.pep: validated full length
Sequenced Size:382

Clone Sequence Records

BO18223.3prime Sequence

380 bp (380 high quality bases) assembled on 2006-10-13

> BO18223.3prime
ATGGTCTAGAAAGCTTGCCTTGCATGGATCCCACAGCATAAGTCCTTTTC
CGGGGCAGTCGGGTGAGCGGATCACGTCGCACTCCTTCGGATTGCAATAG
CATTTGAGGCCATTTACCACGTGGTTGCTGCCGCCAGATGCTGCCATAAC
CAGTAGCAGATAGCACCACAAGTAGATGAGCAGCGCGCTCACGTTCAGGC
GGCCAAAATAACTTCCGTTCGAGCGCATCCTAAGCGGAAGCTTGGCATTG
TTGTGCTGCTGTTTGCCAGCGAGCCCCCTCTTTCGCTCCCCCTGCGACGA
CCTTGTGCGTACATCCTGCTCCAGGACCACGCCCCTCCGCCCCACGCCTC
TGGCACTTCCGCCCATGTCGACTGATAACT

BO18223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13253-PA 351 CG13253-RA 1..348 366..19 1740 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-RB 2737 CG13253-RB 357..704 366..19 1740 100 Minus
cmpy-RD 1638 CG13253-RD 373..719 366..20 1735 100 Minus
cmpy-RC 1622 CG13253-RC 357..703 366..20 1735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20716798..20717145 19..366 1740 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:08:23 has no hits.

BO18223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:02 Download gff for BO18223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13253-PA 1..351 15..366 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:09 Download gff for BO18223.3prime
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..708 14..366 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:06 Download gff for BO18223.3prime
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..708 14..366 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:06 Download gff for BO18223.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20716794..20717145 14..366 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:09 Download gff for BO18223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20709894..20710245 14..366 99   Plus

BO18223.5prime Sequence

380 bp (380 high quality bases) assembled on 2006-10-13

> BO18223.5prime
GAAGTTATCAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGG
GCGTGGTCCTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGA
AAGAGGGGGCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCT
TAGGATGCGCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGC
TGCTCATCTACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGC
GGCAGCAACCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGA
GTGCGACGTGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGT
GGGATCCATGCAAGGCAAGCTTTCTAGACC

BO18223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13253-PA 351 CG13253-RA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-RB 2737 CG13253-RB 357..704 17..364 1740 100 Plus
cmpy-RD 1638 CG13253-RD 373..719 17..363 1735 100 Plus
cmpy-RC 1622 CG13253-RC 357..703 17..363 1735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20716798..20717145 364..17 1740 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:18:01 has no hits.

BO18223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:03 Download gff for BO18223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13253-PA 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:07 Download gff for BO18223.5prime
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..708 17..369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:19 Download gff for BO18223.5prime
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..708 17..369 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:19 Download gff for BO18223.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20716794..20717145 17..369 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:07 Download gff for BO18223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20709894..20710245 17..369 99   Minus

BO18223.complete Sequence

382 bp assembled on 2006-10-11

GenBank Submission: FJ634349

> BO18223.complete
GAAGTTATCAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGG
GCGTGGTCCTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGA
AAGAGGGGGCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCT
TAGGATGCGCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGC
TGCTCATCTACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGC
GGCAGCAACCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGA
GTGCGACGTGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGT
GGGATCCATGCAAGGCAAGCTTTCTAGACCAT

BO18223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-RB 351 CG13253-PB 1..348 17..364 1740 100 Plus
cmpy-RD 822 CG13253-PD 1..347 17..363 1735 100 Plus
cmpy-RC 822 CG13253-PC 1..347 17..363 1735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-RB 2737 CG13253-RB 357..704 17..364 1740 100 Plus
cmpy-RD 1638 CG13253-RD 373..719 17..363 1735 100 Plus
cmpy-RC 1622 CG13253-RC 357..703 17..363 1735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20716798..20717145 364..17 1740 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:39:34 has no hits.

BO18223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:03 Download gff for BO18223.complete
Subject Subject Range Query Range Percent Splice Strand
CG13253-RB 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:17 Download gff for BO18223.complete
Subject Subject Range Query Range Percent Splice Strand
CG13253-RB 355..706 17..369 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:34 Download gff for BO18223.complete
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..704 17..366 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:04 Download gff for BO18223.complete
Subject Subject Range Query Range Percent Splice Strand
CG13253-RB 355..706 17..369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:37 Download gff for BO18223.complete
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..704 17..366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:37 Download gff for BO18223.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20716796..20717145 17..366 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:34 Download gff for BO18223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20709896..20710245 17..366 99   Minus

BO18223.pep Sequence

Translation from 16 to 382

> BO18223.pep
MGGSARGVGRRGVVLEQDVRTRSSQGERKRGLAGKQQHNNAKLPLRMRSN
GSYFGRLNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIR
SPDCPGKGLMLWDPCKASFLDH

BO18223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-PB 116 CG13253-PB 1..116 1..116 627 100 Plus
cmpy-PD 273 CG13253-PD 1..116 1..116 627 100 Plus
cmpy-PC 273 CG13253-PC 1..116 1..116 627 100 Plus