Clone BO18225 Report

Search the DGRC for BO18225

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG32188-RA
Protein status:BO18225.pep: validated full length
Sequenced Size:349

Clone Sequence Records

BO18225.5prime Sequence

347 bp (347 high quality bases) assembled on 2006-10-13

> BO18225.5prime
GAAGTTATCAGTCGACATGCGCTTTCTACTAGCTCTCTCCCTGGCCGTCC
TGGTCGTTCTGATCCTCCACAGCAGCCAGGTGTCCTCCACATCAACCACC
ACCTCCACAAGTGCTTCGGCCACAACCACCACGGCTGCTACGACAACAAC
TGATTCGTCCACCACCACCACCACCGAATCCTCCACGACCACCACTGCCT
CCACAAAGAAGAAGCACCGACGCCGCCGTGTCATCATCAGGCGCGTGATC
ATCCGCCGTGGCAGGGAAGGACGAAGTGAGAGCGGAGACAATCGCCGACG
GGTCGTCGTACGCGTTCGCAGGACGGCCAACGCAAGCTTTCTAGACC

BO18225.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32189-PA 318 CG32189-RA 1..315 17..331 1575 100 Plus
CG32188-PA 318 CG32188-RA 1..315 17..331 1475 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32189-RA 430 CG32189-RA 29..348 12..331 1585 99.7 Plus
CG32188-RA 349 CG32188-RA 27..346 12..331 1525 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17834827..17835146 331..12 1585 99.7 Minus
3L 28110227 3L 17833280..17833599 331..12 1525 98.4 Minus
Blast to na_te.dros performed on 2015-02-06 10:18:39 has no hits.

BO18225.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:06 Download gff for BO18225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32189-PA 1..318 17..334 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:14 Download gff for BO18225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32189-RA 29..352 12..335 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:24 Download gff for BO18225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32189-RA 29..352 12..335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:24 Download gff for BO18225.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17834822..17835146 12..335 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:14 Download gff for BO18225.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17827922..17828246 12..335 99   Minus

BO18225.3prime Sequence

347 bp (347 high quality bases) assembled on 2006-10-13

> BO18225.3prime
ATGGTCTAGAAAGCTTGCGTTGGCCGTCCTGCGAACGCGTACGACGACCC
GTCGGCGATTGTCTCCGCTCTCACTTCGTCCTTCCCTGCCACGGCGGATG
ATCACGCGCCTGATGATGACACGGCGGCGTCGGTGCTTCTTCTTTGTGGA
GGCAGTGGTGGTCGTGGAGGATTCGGTGGTGGTGGTGGTGGACGAATCAG
TTGTTGTCGTAGCAGCCGTGGTGGTTGTGGCCGAAGCACTTGTGGAGGTG
GTGGTTGATGTGGAGGACACCTGGCTGCTGTGGAGGATCAGAACGACCAG
GACGGCCAGGGAGAGAGCTAGTAGAAAGCGCATGTCGACTGATAACT

BO18225.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32189-PA 318 CG32189-RA 1..315 333..19 1575 100 Minus
CG32188-PA 318 CG32188-RA 1..315 333..19 1475 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32189-RA 430 CG32189-RA 29..348 338..19 1585 99.7 Minus
CG32188-RA 349 CG32188-RA 27..346 338..19 1525 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17834827..17835146 19..338 1585 99.7 Plus
3L 28110227 3L 17833280..17833599 19..338 1525 98.4 Plus
Blast to na_te.dros performed on 2015-02-10 16:40:53 has no hits.

BO18225.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:05 Download gff for BO18225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32189-PA 1..318 16..333 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:52 Download gff for BO18225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32189-RA 29..352 15..338 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:58 Download gff for BO18225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32189-RA 29..352 15..338 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:58 Download gff for BO18225.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17834822..17835146 15..338 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:52 Download gff for BO18225.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17827922..17828246 15..338 99   Plus

BO18225.complete Sequence

349 bp assembled on 2006-10-11

GenBank Submission: FJ634350

> BO18225.complete
GAAGTTATCAGTCGACATGCGCTTTCTACTAGCTCTCTCCCTGGCCGTCC
TGGTCGTTCTGATCCTCCACAGCAGCCAGGTGTCCTCCACATCAACCACC
ACCTCCACAAGTGCTTCGGCCACAACCACCACGGCTGCTACGACAACAAC
TGATTCGTCCACCACCACCACCACCGAATCCTCCACGACCACCACTGCCT
CCACAAAGAAGAAGCACCGACGCCGCCGTGTCATCATCAGGCGCGTGATC
ATCCGCCGTGGCAGGGAAGGACGAAGTGAGAGCGGAGACAATCGCCGACG
GGTCGTCGTACGCGTTCGCAGGACGGCCAACGCAAGCTTTCTAGACCAT

BO18225.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32189-RA 318 CG32189-PA 1..315 17..331 1575 100 Plus
CG32188-RA 318 CG32188-PA 1..315 17..331 1515 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32189-RA 430 CG32189-RA 29..348 12..331 1585 99.7 Plus
CG32188-RA 349 CG32188-RA 27..346 12..331 1525 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17834827..17835146 331..12 1585 99.7 Minus
3L 28110227 3L 17833280..17833599 331..12 1525 98.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:22:17 has no hits.

BO18225.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:19 Download gff for BO18225.complete
Subject Subject Range Query Range Percent Splice Strand
CG32189-RA 1..318 17..334 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:22 Download gff for BO18225.complete
Subject Subject Range Query Range Percent Splice Strand
CG32189-RA 29..352 12..335 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:15 Download gff for BO18225.complete
Subject Subject Range Query Range Percent Splice Strand
CG32189-RA 34..348 17..333 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:19 Download gff for BO18225.complete
Subject Subject Range Query Range Percent Splice Strand
CG32189-RA 29..352 12..335 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:40 Download gff for BO18225.complete
Subject Subject Range Query Range Percent Splice Strand
CG32189-RA 34..348 17..333 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:40 Download gff for BO18225.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17834824..17835141 17..333 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:15 Download gff for BO18225.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17827924..17828241 17..333 99   Minus

BO18225.pep Sequence

Translation from 16 to 349

> BO18225.pep
MRFLLALSLAVLVVLILHSSQVSSTSTTTSTSASATTTTAATTTTDSSTT
TTTESSTTTTASTKKKHRRRRVIIRRVIIRRGREGRSESGDNRRRVVVRV
RRTANASFLDH

BO18225.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32189-PA 105 CG32189-PA 1..105 1..105 493 100 Plus
CG32188-PA 105 CG32188-PA 1..105 1..105 493 100 Plus
CG32071-PA 150 CG32071-PA 11..115 1..95 199 49.5 Plus
CG32453-PB 120 CG32453-PB 1..116 1..105 189 45.8 Plus
CG32453-PA 120 CG32453-PA 1..116 1..105 189 45.8 Plus