Clone Sequence Records
BO18225.5prime Sequence
347 bp (347 high quality bases) assembled on 2006-10-13
> BO18225.5prime
GAAGTTATCAGTCGACATGCGCTTTCTACTAGCTCTCTCCCTGGCCGTCC
TGGTCGTTCTGATCCTCCACAGCAGCCAGGTGTCCTCCACATCAACCACC
ACCTCCACAAGTGCTTCGGCCACAACCACCACGGCTGCTACGACAACAAC
TGATTCGTCCACCACCACCACCACCGAATCCTCCACGACCACCACTGCCT
CCACAAAGAAGAAGCACCGACGCCGCCGTGTCATCATCAGGCGCGTGATC
ATCCGCCGTGGCAGGGAAGGACGAAGTGAGAGCGGAGACAATCGCCGACG
GGTCGTCGTACGCGTTCGCAGGACGGCCAACGCAAGCTTTCTAGACC
BO18225.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-PA | 318 | CG32189-RA | 1..315 | 17..331 | 1575 | 100 | Plus |
CG32188-PA | 318 | CG32188-RA | 1..315 | 17..331 | 1475 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-RA | 430 | CG32189-RA | 29..348 | 12..331 | 1585 | 99.7 | Plus |
CG32188-RA | 349 | CG32188-RA | 27..346 | 12..331 | 1525 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17834827..17835146 | 331..12 | 1585 | 99.7 | Minus |
3L | 28110227 | 3L | 17833280..17833599 | 331..12 | 1525 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:18:39 has no hits.
BO18225.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:06 Download gff for
BO18225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-PA | 1..318 | 17..334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:14 Download gff for
BO18225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..352 | 12..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:24 Download gff for
BO18225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..352 | 12..335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:24 Download gff for
BO18225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17834822..17835146 | 12..335 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:14 Download gff for
BO18225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17827922..17828246 | 12..335 | 99 | | Minus |
BO18225.3prime Sequence
347 bp (347 high quality bases) assembled on 2006-10-13
> BO18225.3prime
ATGGTCTAGAAAGCTTGCGTTGGCCGTCCTGCGAACGCGTACGACGACCC
GTCGGCGATTGTCTCCGCTCTCACTTCGTCCTTCCCTGCCACGGCGGATG
ATCACGCGCCTGATGATGACACGGCGGCGTCGGTGCTTCTTCTTTGTGGA
GGCAGTGGTGGTCGTGGAGGATTCGGTGGTGGTGGTGGTGGACGAATCAG
TTGTTGTCGTAGCAGCCGTGGTGGTTGTGGCCGAAGCACTTGTGGAGGTG
GTGGTTGATGTGGAGGACACCTGGCTGCTGTGGAGGATCAGAACGACCAG
GACGGCCAGGGAGAGAGCTAGTAGAAAGCGCATGTCGACTGATAACT
BO18225.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-PA | 318 | CG32189-RA | 1..315 | 333..19 | 1575 | 100 | Minus |
CG32188-PA | 318 | CG32188-RA | 1..315 | 333..19 | 1475 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-RA | 430 | CG32189-RA | 29..348 | 338..19 | 1585 | 99.7 | Minus |
CG32188-RA | 349 | CG32188-RA | 27..346 | 338..19 | 1525 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17834827..17835146 | 19..338 | 1585 | 99.7 | Plus |
3L | 28110227 | 3L | 17833280..17833599 | 19..338 | 1525 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:40:53 has no hits.
BO18225.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:05 Download gff for
BO18225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-PA | 1..318 | 16..333 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:52 Download gff for
BO18225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..352 | 15..338 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:58 Download gff for
BO18225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..352 | 15..338 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:58 Download gff for
BO18225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17834822..17835146 | 15..338 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:52 Download gff for
BO18225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17827922..17828246 | 15..338 | 99 | | Plus |
BO18225.complete Sequence
349 bp assembled on 2006-10-11
GenBank Submission: FJ634350
> BO18225.complete
GAAGTTATCAGTCGACATGCGCTTTCTACTAGCTCTCTCCCTGGCCGTCC
TGGTCGTTCTGATCCTCCACAGCAGCCAGGTGTCCTCCACATCAACCACC
ACCTCCACAAGTGCTTCGGCCACAACCACCACGGCTGCTACGACAACAAC
TGATTCGTCCACCACCACCACCACCGAATCCTCCACGACCACCACTGCCT
CCACAAAGAAGAAGCACCGACGCCGCCGTGTCATCATCAGGCGCGTGATC
ATCCGCCGTGGCAGGGAAGGACGAAGTGAGAGCGGAGACAATCGCCGACG
GGTCGTCGTACGCGTTCGCAGGACGGCCAACGCAAGCTTTCTAGACCAT
BO18225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-RA | 318 | CG32189-PA | 1..315 | 17..331 | 1575 | 100 | Plus |
CG32188-RA | 318 | CG32188-PA | 1..315 | 17..331 | 1515 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-RA | 430 | CG32189-RA | 29..348 | 12..331 | 1585 | 99.7 | Plus |
CG32188-RA | 349 | CG32188-RA | 27..346 | 12..331 | 1525 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17834827..17835146 | 331..12 | 1585 | 99.7 | Minus |
3L | 28110227 | 3L | 17833280..17833599 | 331..12 | 1525 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:22:17 has no hits.
BO18225.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:19 Download gff for
BO18225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 1..318 | 17..334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:22 Download gff for
BO18225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..352 | 12..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:15 Download gff for
BO18225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 34..348 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:19 Download gff for
BO18225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 29..352 | 12..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:40 Download gff for
BO18225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32189-RA | 34..348 | 17..333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:40 Download gff for
BO18225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17834824..17835141 | 17..333 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:15 Download gff for
BO18225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17827924..17828241 | 17..333 | 99 | | Minus |
BO18225.pep Sequence
Translation from 16 to 349
> BO18225.pep
MRFLLALSLAVLVVLILHSSQVSSTSTTTSTSASATTTTAATTTTDSSTT
TTTESSTTTTASTKKKHRRRRVIIRRVIIRRGREGRSESGDNRRRVVVRV
RRTANASFLDH
BO18225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32189-PA | 105 | CG32189-PA | 1..105 | 1..105 | 493 | 100 | Plus |
CG32188-PA | 105 | CG32188-PA | 1..105 | 1..105 | 493 | 100 | Plus |
CG32071-PA | 150 | CG32071-PA | 11..115 | 1..95 | 199 | 49.5 | Plus |
CG32453-PB | 120 | CG32453-PB | 1..116 | 1..105 | 189 | 45.8 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..116 | 1..105 | 189 | 45.8 | Plus |