Clone BO18226 Report

Search the DGRC for BO18226

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG1882-RA
Protein status:BO18226.pep: validated full length
Sequenced Size:1396

Clone Sequence Records

BO18226.3prime Sequence

681 bp (606 high quality bases) assembled on 2006-10-13

> BO18226.3prime
ATGGTCTAGAAAGCTTGCCTTCGGTTTGATGTTCGCCGCCAGTTCGTCGG
CGGTCGGCGTGGATGTGTCGGCTGCGGTGACAGGTTGGGGCACCGGCTGG
ACTTCTGGCTGGACCTCGACCGTCTTCGCTGTGCTCAGGCTGGGCTCGCG
CTCCTCGTCGGACTCGGTGGATTCGCGGATTAGCTGCAGGGGCGTTATCA
GCTTGCCACCGGCCACCTTGTACATATCACAGGTCTCGTTCACGTAGCGG
TTGAACACGTCCGGCTTGTCGGCATATACGTGGTGGCCGGCGCCCGTCAC
GATCTTGATGTCCACCATATTGCTGCCGCGCTGCGACTTGATCTTCTCCC
CCGACGACGAGTCGATCCACGAACGGGAGCCGTAGATGAACGTGATTGGT
ATGTCGCTGCGCACGTCCTTGATGCGGTGAATCATGGGGTGCTTGGCCCA
TCCAAAGGATTGCATCATTGTGTGGAAGGCGGACTCACCGCTGGGATTCT
GCGCATTGCACTGGTGTATGTACTGCGGCAGCAAGTTGATATCCTCCTCG
ATGGTGCTCTGGAACTTTCGCATAATGTCTGGCCGCGTCTTTTGCACCAC
CCACTGGCCAAAGGGTCCGGCGGCGCGGAGAGCCCACAACGGATTTAGCG
GGGTCAGTACTCTAGCTATTGGCCCGCACCC

BO18226.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PA 1365 CG1882-RA 712..1362 669..19 3255 100 Minus
CG1882-PC 1164 CG1882-RC 511..1161 669..19 3255 100 Minus
CG1882-PD 1164 CG1882-RD 511..1161 669..19 3255 100 Minus
CG1882-PB 1164 CG1882-RB 511..1161 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 2695 CG1882-RG 1055..1716 681..19 3290 99.8 Minus
CG1882-RF 1756 CG1882-RF 857..1518 681..19 3290 99.8 Minus
CG1882-RE 1668 CG1882-RE 769..1430 681..19 3290 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813846..7814507 681..19 3265 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 17:33:28 has no hits.

BO18226.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:06 Download gff for BO18226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-PB 500..1164 16..681 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:33 Download gff for BO18226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 686..1352 13..681 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:09 Download gff for BO18226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RE 769..1435 13..681 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:09 Download gff for BO18226.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7813846..7814512 13..681 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:33 Download gff for BO18226.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3701351..3702017 13..681 99   Minus

BO18226.5prime Sequence

878 bp (729 high quality bases) assembled on 2006-10-13

> BO18226.5prime
GAAGTTATCAGTCGACATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCG
TGGTGGATCCAACGGCCGCATCCACCAGCGTCACTATTTCGAACCTGCCA
CAGCCAACAGTTGCGCTGGGATCGGAATCTAAATCGTCCATGGACCTAGA
GGATCCCCGGAACAATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGA
CATCCAGCTCACCAACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCG
TACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGT
GGGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGG
AGGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGG
GTGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGA
CATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGC
TGGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAG
ATGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCAT
TGCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATAC
TAGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGC
AAAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCCGC
TAATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGG
TGCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACATCGAGG
AAGATACCAACTTGGTGCCGCAGACATA

BO18226.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PA 1365 CG1882-RA 1..731 17..747 3655 100 Plus
CG1882-PC 1164 CG1882-RC 1..530 218..747 2650 100 Plus
CG1882-PD 1164 CG1882-RD 1..530 218..747 2650 100 Plus
CG1882-PB 1164 CG1882-RB 1..530 218..747 2650 100 Plus
CG1882-PA 1365 CG1882-RA 736..827 752..843 460 100 Plus
CG1882-PC 1164 CG1882-RC 535..626 752..843 460 100 Plus
CG1882-PD 1164 CG1882-RD 535..626 752..843 460 100 Plus
CG1882-PB 1164 CG1882-RB 535..626 752..843 460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 2695 CG1882-RG 351..1218 13..878 4185 99.1 Plus
CG1882-RF 1756 CG1882-RF 153..1020 13..878 4185 99.1 Plus
CG1882-RA 1954 CG1882-RA 351..1218 13..878 4185 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813279..7814003 150..873 3470 98.9 Plus
2R 25286936 2R 7812854..7812993 13..152 685 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 11:06:53 has no hits.

BO18226.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:06 Download gff for BO18226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-PA 1..863 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:25 Download gff for BO18226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 349..1217 10..877 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:00 Download gff for BO18226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 349..1217 10..877 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:00 Download gff for BO18226.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7812852..7812992 10..151 98 -> Plus
2R 7813281..7814008 152..877 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:25 Download gff for BO18226.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3700357..3700497 10..151 98 -> Plus
arm_2R 3700786..3701513 152..877 99   Plus

BO18226.complete Sequence

1396 bp assembled on 2006-10-11

GenBank Submission: FJ634351

> BO18226.complete
GAAGTTATCAGTCGACATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCG
TGGTGGATCCAACGGCCGCATCCACCAGCGTCACTATTTCGAACCTGCCA
CAGCCAACAGTTGCGCTGGGATCGGAATCTAAATCGTCCATGGACCTAGA
GGATCCCCGGAACAATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGA
CATCCAGCTCACCAACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCG
TACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGT
GGGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGG
AGGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGG
GTGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGA
CATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGC
TGGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAG
ATGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCAT
TGCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATAC
TAGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGC
AAAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCT
AAATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGG
TGCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAG
GAGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAA
TCCCAGCGGTGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGG
CCAAGCACCCCATGATTCACCGCATCAAGGACGTGCGCAGCGACATACCA
ATCACGTTCATCTACGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGA
GAAGATCAAGTCGCAGCGCGGCAGCAATATGGTGGACATCAAGATCGTGA
CGGGCGCCGGCCACCACGTATATGCCGACAAGCCGGACGTGTTCAACCGC
TACGTGAACGAGACCTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGAT
AACGCCCCTGCAGCTAATCCGCGAATCCACCGAGTCCGACGAGGAGCGCG
AGCCCAGCCTGAGCACAGCGAAGACGGTCGAGGTCCAGCCAGAAGTCCAG
CCGGTGCCCCAACCTGTCACCGCAGCCGACACATCCACGCCGACCGCCGA
CGAACTGGCGGCGAACATCAAACCGAAGGCAAGCTTTCTAGACCAT

BO18226.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 1365 CG1882-PG 1..1362 17..1378 6810 100 Plus
CG1882-RF 1365 CG1882-PF 1..1362 17..1378 6810 100 Plus
CG1882-RA 1365 CG1882-PA 1..1362 17..1378 6810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 2695 CG1882-RG 351..1716 13..1378 6815 99.9 Plus
CG1882-RF 1756 CG1882-RF 153..1518 13..1378 6815 99.9 Plus
CG1882-RA 1954 CG1882-RA 351..1716 13..1378 6815 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813279..7814507 150..1378 6145 100 Plus
2R 25286936 2R 7812854..7812993 13..152 685 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 19:37:35 has no hits.

BO18226.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:13 Download gff for BO18226.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1365 17..1381 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:20 Download gff for BO18226.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 347..1719 10..1384 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:24 Download gff for BO18226.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 355..1716 17..1380 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:14 Download gff for BO18226.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 347..1719 10..1384 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:08 Download gff for BO18226.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 355..1716 17..1380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:08 Download gff for BO18226.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7812858..7812992 17..151 100 -> Plus
2R 7813281..7814507 152..1380 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:24 Download gff for BO18226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3700363..3700497 17..151 100 -> Plus
arm_2R 3700786..3702012 152..1380 99   Plus

BO18226.pep Sequence

Translation from 16 to 1396

> BO18226.pep
MSEPLALASGGVVDPTAASTSVTISNLPQPTVALGSESKSSMDLEDPRNN
RFFLWKWLCNWTSSSPTMLRAVEKKILSYVKLPYRGFFVDIGPAVGEADK
IWTISMNTESKEVPLVLLHGLGAGIALWVMNLDAFAKGRPVYAMDILGFG
RSSRPLFAKDALVCEKQFVKSVEEWRREMNINDMILLGHSMGGFIASSYA
LSHPERVKHLILADPWGFPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWA
LRAAGPFGQWVVQKTRPDIMRKFQSTIEEDINLLPQYIHQCNAQNPSGES
AFHTMMQSFGWAKHPMIHRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQ
RGSNMVDIKIVTGAGHHVYADKPDVFNRYVNETCDMYKVAGGKLITPLQL
IRESTESDEEREPSLSTAKTVEVQPEVQPVPQPVTAADTSTPTADELAAN
IKPKASFLDH

BO18226.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PG 454 CG1882-PG 1..454 1..454 2383 100 Plus
CG1882-PF 454 CG1882-PF 1..454 1..454 2383 100 Plus
CG1882-PA 454 CG1882-PA 1..454 1..454 2383 100 Plus
CG1882-PE 387 CG1882-PE 1..387 68..454 2031 100 Plus
CG1882-PB 387 CG1882-PB 1..387 68..454 2031 100 Plus