Clone Sequence Records
BO18226.3prime Sequence
681 bp (606 high quality bases) assembled on 2006-10-13
> BO18226.3prime
ATGGTCTAGAAAGCTTGCCTTCGGTTTGATGTTCGCCGCCAGTTCGTCGG
CGGTCGGCGTGGATGTGTCGGCTGCGGTGACAGGTTGGGGCACCGGCTGG
ACTTCTGGCTGGACCTCGACCGTCTTCGCTGTGCTCAGGCTGGGCTCGCG
CTCCTCGTCGGACTCGGTGGATTCGCGGATTAGCTGCAGGGGCGTTATCA
GCTTGCCACCGGCCACCTTGTACATATCACAGGTCTCGTTCACGTAGCGG
TTGAACACGTCCGGCTTGTCGGCATATACGTGGTGGCCGGCGCCCGTCAC
GATCTTGATGTCCACCATATTGCTGCCGCGCTGCGACTTGATCTTCTCCC
CCGACGACGAGTCGATCCACGAACGGGAGCCGTAGATGAACGTGATTGGT
ATGTCGCTGCGCACGTCCTTGATGCGGTGAATCATGGGGTGCTTGGCCCA
TCCAAAGGATTGCATCATTGTGTGGAAGGCGGACTCACCGCTGGGATTCT
GCGCATTGCACTGGTGTATGTACTGCGGCAGCAAGTTGATATCCTCCTCG
ATGGTGCTCTGGAACTTTCGCATAATGTCTGGCCGCGTCTTTTGCACCAC
CCACTGGCCAAAGGGTCCGGCGGCGCGGAGAGCCCACAACGGATTTAGCG
GGGTCAGTACTCTAGCTATTGGCCCGCACCC
BO18226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-PA | 1365 | CG1882-RA | 712..1362 | 669..19 | 3255 | 100 | Minus |
CG1882-PC | 1164 | CG1882-RC | 511..1161 | 669..19 | 3255 | 100 | Minus |
CG1882-PD | 1164 | CG1882-RD | 511..1161 | 669..19 | 3255 | 100 | Minus |
CG1882-PB | 1164 | CG1882-RB | 511..1161 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 2695 | CG1882-RG | 1055..1716 | 681..19 | 3290 | 99.8 | Minus |
CG1882-RF | 1756 | CG1882-RF | 857..1518 | 681..19 | 3290 | 99.8 | Minus |
CG1882-RE | 1668 | CG1882-RE | 769..1430 | 681..19 | 3290 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7813846..7814507 | 681..19 | 3265 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:33:28 has no hits.
BO18226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:06 Download gff for
BO18226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-PB | 500..1164 | 16..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:33 Download gff for
BO18226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RB | 686..1352 | 13..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:09 Download gff for
BO18226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RE | 769..1435 | 13..681 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:09 Download gff for
BO18226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7813846..7814512 | 13..681 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:33 Download gff for
BO18226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3701351..3702017 | 13..681 | 99 | | Minus |
BO18226.5prime Sequence
878 bp (729 high quality bases) assembled on 2006-10-13
> BO18226.5prime
GAAGTTATCAGTCGACATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCG
TGGTGGATCCAACGGCCGCATCCACCAGCGTCACTATTTCGAACCTGCCA
CAGCCAACAGTTGCGCTGGGATCGGAATCTAAATCGTCCATGGACCTAGA
GGATCCCCGGAACAATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGA
CATCCAGCTCACCAACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCG
TACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGT
GGGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGG
AGGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGG
GTGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGA
CATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGC
TGGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAG
ATGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCAT
TGCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATAC
TAGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGC
AAAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCCGC
TAATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGG
TGCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACATCGAGG
AAGATACCAACTTGGTGCCGCAGACATA
BO18226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-PA | 1365 | CG1882-RA | 1..731 | 17..747 | 3655 | 100 | Plus |
CG1882-PC | 1164 | CG1882-RC | 1..530 | 218..747 | 2650 | 100 | Plus |
CG1882-PD | 1164 | CG1882-RD | 1..530 | 218..747 | 2650 | 100 | Plus |
CG1882-PB | 1164 | CG1882-RB | 1..530 | 218..747 | 2650 | 100 | Plus |
CG1882-PA | 1365 | CG1882-RA | 736..827 | 752..843 | 460 | 100 | Plus |
CG1882-PC | 1164 | CG1882-RC | 535..626 | 752..843 | 460 | 100 | Plus |
CG1882-PD | 1164 | CG1882-RD | 535..626 | 752..843 | 460 | 100 | Plus |
CG1882-PB | 1164 | CG1882-RB | 535..626 | 752..843 | 460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 2695 | CG1882-RG | 351..1218 | 13..878 | 4185 | 99.1 | Plus |
CG1882-RF | 1756 | CG1882-RF | 153..1020 | 13..878 | 4185 | 99.1 | Plus |
CG1882-RA | 1954 | CG1882-RA | 351..1218 | 13..878 | 4185 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7813279..7814003 | 150..873 | 3470 | 98.9 | Plus |
2R | 25286936 | 2R | 7812854..7812993 | 13..152 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:06:53 has no hits.
BO18226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:06 Download gff for
BO18226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-PA | 1..863 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:25 Download gff for
BO18226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 349..1217 | 10..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:00 Download gff for
BO18226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 349..1217 | 10..877 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:00 Download gff for
BO18226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7812852..7812992 | 10..151 | 98 | -> | Plus |
2R | 7813281..7814008 | 152..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:25 Download gff for
BO18226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3700357..3700497 | 10..151 | 98 | -> | Plus |
arm_2R | 3700786..3701513 | 152..877 | 99 | | Plus |
BO18226.complete Sequence
1396 bp assembled on 2006-10-11
GenBank Submission: FJ634351
> BO18226.complete
GAAGTTATCAGTCGACATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCG
TGGTGGATCCAACGGCCGCATCCACCAGCGTCACTATTTCGAACCTGCCA
CAGCCAACAGTTGCGCTGGGATCGGAATCTAAATCGTCCATGGACCTAGA
GGATCCCCGGAACAATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGA
CATCCAGCTCACCAACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCG
TACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGT
GGGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGG
AGGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGG
GTGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGA
CATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGC
TGGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAG
ATGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCAT
TGCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATAC
TAGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGC
AAAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCT
AAATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGG
TGCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAG
GAGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAA
TCCCAGCGGTGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGG
CCAAGCACCCCATGATTCACCGCATCAAGGACGTGCGCAGCGACATACCA
ATCACGTTCATCTACGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGA
GAAGATCAAGTCGCAGCGCGGCAGCAATATGGTGGACATCAAGATCGTGA
CGGGCGCCGGCCACCACGTATATGCCGACAAGCCGGACGTGTTCAACCGC
TACGTGAACGAGACCTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGAT
AACGCCCCTGCAGCTAATCCGCGAATCCACCGAGTCCGACGAGGAGCGCG
AGCCCAGCCTGAGCACAGCGAAGACGGTCGAGGTCCAGCCAGAAGTCCAG
CCGGTGCCCCAACCTGTCACCGCAGCCGACACATCCACGCCGACCGCCGA
CGAACTGGCGGCGAACATCAAACCGAAGGCAAGCTTTCTAGACCAT
BO18226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 1365 | CG1882-PG | 1..1362 | 17..1378 | 6810 | 100 | Plus |
CG1882-RF | 1365 | CG1882-PF | 1..1362 | 17..1378 | 6810 | 100 | Plus |
CG1882-RA | 1365 | CG1882-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 2695 | CG1882-RG | 351..1716 | 13..1378 | 6815 | 99.9 | Plus |
CG1882-RF | 1756 | CG1882-RF | 153..1518 | 13..1378 | 6815 | 99.9 | Plus |
CG1882-RA | 1954 | CG1882-RA | 351..1716 | 13..1378 | 6815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7813279..7814507 | 150..1378 | 6145 | 100 | Plus |
2R | 25286936 | 2R | 7812854..7812993 | 13..152 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:37:35 has no hits.
BO18226.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:13 Download gff for
BO18226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 1..1365 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:20 Download gff for
BO18226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 347..1719 | 10..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:24 Download gff for
BO18226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 355..1716 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:14 Download gff for
BO18226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 347..1719 | 10..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:08 Download gff for
BO18226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 355..1716 | 17..1380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:08 Download gff for
BO18226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7812858..7812992 | 17..151 | 100 | -> | Plus |
2R | 7813281..7814507 | 152..1380 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:24 Download gff for
BO18226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3700363..3700497 | 17..151 | 100 | -> | Plus |
arm_2R | 3700786..3702012 | 152..1380 | 99 | | Plus |
BO18226.pep Sequence
Translation from 16 to 1396
> BO18226.pep
MSEPLALASGGVVDPTAASTSVTISNLPQPTVALGSESKSSMDLEDPRNN
RFFLWKWLCNWTSSSPTMLRAVEKKILSYVKLPYRGFFVDIGPAVGEADK
IWTISMNTESKEVPLVLLHGLGAGIALWVMNLDAFAKGRPVYAMDILGFG
RSSRPLFAKDALVCEKQFVKSVEEWRREMNINDMILLGHSMGGFIASSYA
LSHPERVKHLILADPWGFPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWA
LRAAGPFGQWVVQKTRPDIMRKFQSTIEEDINLLPQYIHQCNAQNPSGES
AFHTMMQSFGWAKHPMIHRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQ
RGSNMVDIKIVTGAGHHVYADKPDVFNRYVNETCDMYKVAGGKLITPLQL
IRESTESDEEREPSLSTAKTVEVQPEVQPVPQPVTAADTSTPTADELAAN
IKPKASFLDH
BO18226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-PG | 454 | CG1882-PG | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PF | 454 | CG1882-PF | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PA | 454 | CG1882-PA | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PE | 387 | CG1882-PE | 1..387 | 68..454 | 2031 | 100 | Plus |
CG1882-PB | 387 | CG1882-PB | 1..387 | 68..454 | 2031 | 100 | Plus |