Clone Sequence Records
BO18227.3prime Sequence
745 bp (621 high quality bases) assembled on 2006-10-13
> BO18227.3prime
ATGGTCTAGAAAGCTTGCGTGCTGCGACTCCACCTGGGGCGTGGAGTTGC
GACGAGGCTTCGCCGGAGGATCGTTCCAGGGCTGGACATTCGCCTTGCCG
AAGATCACGTACAGAGTATTGCCCACCAGGTAGAATCCGGCTGCAATGAA
GAACACAATGCGCCACTGCTCGGGATCGTGCTCATTTGTGACAATGAATC
CGACGATCAGCGGAGCAATGATGCTCATAATGTTGGCCACGCCGTTGGTG
ATGCCCATGAGGATGCCAGCGAAGTTGGGCGACAGATCGATGTGGTTCGT
GTTGAAGCCCAGGTAGGTCGCTCCATTCATGCCCACGGTGAAACAGAGTA
GGACCACAGCCAGTTCCGACTGATCTGGGTTCACATAGCCAAGGCCAACC
AAGGTGACCATAGGAATCCACAGACCAATGGAGTTGAAGAGCTTCCTGCT
CGTAGACCTTGAAATGCAGTTGCGGTTGTTCAACTGTGCGGATATCGACG
AGAATACAAAGGACATGGCGAACATGCAGACGTAGGGCAGCGAGGAGAGA
AGAGCATTCGACTTGATGTCCTTGCCCAGGATGTTCTTCATGTAGCTGGG
GATCTCGGTGAGCAGGGTCCAGAAACCCCAGTTGTGCACCGAGTGTGAGA
CGATTAGGACGAGGAAAGCGGGTGAAGTGAAGAAGCTCAGCCAGGGCGTG
GGCAACTGCTCCTTCGGCTGTTCCTGGCCACCGCTCACCTCGTCG
BO18227.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-PA | 1476 | CG15096-RA | 747..1473 | 745..19 | 3610 | 99.8 | Minus |
CG15096-PB | 1428 | CG15096-RB | 699..1425 | 745..19 | 3610 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-RC | 3536 | CG15096-RC | 2551..3277 | 745..19 | 3620 | 99.9 | Minus |
CG15096-RB | 1783 | CG15096-RB | 798..1524 | 745..19 | 3620 | 99.9 | Minus |
CG15096-RA | 2060 | CG15096-RA | 1075..1801 | 745..19 | 3620 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18808890..18809454 | 181..745 | 2810 | 99.8 | Plus |
2R | 25286936 | 2R | 18808615..18808778 | 19..182 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:47:31 has no hits.
BO18227.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:07 Download gff for
BO18227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-PB | 699..1428 | 18..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:57:39 Download gff for
BO18227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 1075..1801 | 19..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:57:50 Download gff for
BO18227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 1075..1801 | 19..745 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:57:50 Download gff for
BO18227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18808612..18808776 | 18..180 | 98 | <- | Plus |
2R | 18808890..18809454 | 181..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:57:39 Download gff for
BO18227.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14696117..14696281 | 18..180 | 98 | <- | Plus |
arm_2R | 14696395..14696959 | 181..745 | 99 | | Plus |
BO18227.5prime Sequence
734 bp (691 high quality bases) assembled on 2006-10-13
> BO18227.5prime
GAAGTTATCATTCGACATGAAACTCATGTGTTGCGGTGGCAGCAATGGAA
CCATGGACATGGAAGCCAAAAACTCTAACAAAGAGGATGAGGCCGTGGGC
AAACACTCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTT
TGCCCTTACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGG
TGGCCATGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAAT
TGGTCGGAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTA
TGTGATCACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCA
AAGTGATGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTG
ACACCCATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACG
AGTGGTGGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGA
TCCTCTCCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGT
GCCTACTCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGG
AGTGATTGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTG
GAGGAATCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCAGGA
TCGCCACAAGAGTGCAAGTCCATTTCGGCGGAAG
BO18227.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-PA | 1476 | CG15096-RA | 1..716 | 17..732 | 3580 | 100 | Plus |
CG15096-PB | 1428 | CG15096-RB | 41..668 | 105..732 | 3140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-RC | 3536 | CG15096-RC | 1804..2520 | 16..732 | 3585 | 100 | Plus |
CG15096-RA | 2060 | CG15096-RA | 328..1044 | 16..732 | 3585 | 100 | Plus |
CG15096-RB | 1783 | CG15096-RB | 140..767 | 105..732 | 3140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18809485..18809975 | 732..242 | 2455 | 100 | Minus |
2R | 25286936 | 2R | 18810041..18810178 | 242..105 | 690 | 100 | Minus |
2R | 25286936 | 2R | 18814604..18814692 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:20:58 has no hits.
BO18227.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:08 Download gff for
BO18227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-PA | 1..717 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:21 Download gff for
BO18227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 324..1045 | 12..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:38:07 Download gff for
BO18227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 324..1045 | 12..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:38:07 Download gff for
BO18227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18814604..18814696 | 12..104 | 97 | | Minus |
2R | 18809483..18809975 | 242..734 | 99 | <- | Minus |
2R | 18810042..18810178 | 105..241 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:21 Download gff for
BO18227.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14696988..14697480 | 242..734 | 99 | <- | Minus |
arm_2R | 14697547..14697683 | 105..241 | 100 | <- | Minus |
arm_2R | 14702109..14702201 | 12..104 | 97 | | Minus |
BO18227.complete Sequence
1507 bp assembled on 2008-08-14
GenBank Submission: FJ634352
> BO18227.complete
GAAGTTATCATTCGACATGAAACTCATGTGTTGCGGTGGCAGCAATGGAA
CCATGGACATGGAAGCCAAAAACTCTAACAAAGAGGATGAGGCCGTGGGC
AAACACTCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTT
TGCCCTTACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGG
TGGCCATGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAAT
TGGTCGGAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTA
TGTGATCACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCA
AAGTGATGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTG
ACACCCATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACG
AGTGGTGGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGA
TCCTCTCCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGT
GCCTACTCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGG
AGTGATTGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTG
GAGGAATCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCAGGA
TCGCCACAAGAGTGCAAGTCCATTTCGGCGGAGGAGAAGAAGCTGATCGA
GATGTCGCAGGCCGACGAGGTGAGCGGTGGCCAGGAACAGCCGAAGGAGC
AGTTGCCCACGCCCTGGCTGAGCTTCTTCACTTCACCCGCTTTCCTCGTC
CTAATCGTCTCACACTCGGTGCACAACTGGGGTTTCTGGACCCTGCTCAC
CGAGATCCCCAGCTACATGAAGAACATCCTGGGCAAGGACATCAAGTCGA
ATGCTCTTCTCTCCTCGCTGCCCTACGTCTGCATGTTCGCCATGTCCTTT
GTATTCTCGTCGATATCCGCACAGTTGAACAACCGCAACTGCATTTCAAG
GTCTACGAGCAGGAAGCTCTTCAACTCCATTGGTCTGTGGATTCCTATGG
TCACCTTGGTTGGCCTTGGCTATGTGAACCCAGATCAGTCGGAACTGGCT
GTGGTCCTACTCTGTTTCACCGTGGGCATGAATGGAGCGACCTACCTGGG
CTTCAACACGAACCACATCGATCTGTCGCCCAACTTCGCTGGCATCCTCA
TGGGCATCACCAACGGCGTGGCCAACATTATGAGCATCATTGCTCCGCTG
ATCGTCGGATTCATTGTCACAAATGAGCACGATCCCGAGCAGTGGCGCAT
TGTGTTCTTCATTGCAGCCGGATTCTACCTGGTGGGCAATACTCTGTACG
TGATCTTCGGCAAGGCGAATGTCCAGCCCTGGAACGATCCTCCGGCGAAG
CCTCGTCGCAACTCCACGCCCCAGGTGGAGTCGCAGCACGCAAGCTTTCT
AGACCAT
BO18227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-RC | 1476 | CG15096-PC | 1..1473 | 17..1489 | 7350 | 99.9 | Plus |
CG15096-RA | 1476 | CG15096-PA | 1..1473 | 17..1489 | 7350 | 99.9 | Plus |
CG15096-RB | 1428 | CG15096-PB | 41..1425 | 105..1489 | 6910 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-RC | 3536 | CG15096-RC | 1804..3277 | 16..1489 | 7355 | 99.9 | Plus |
CG15096-RA | 2060 | CG15096-RA | 328..1801 | 16..1489 | 7355 | 99.9 | Plus |
CG15096-RB | 1783 | CG15096-RB | 140..1524 | 105..1489 | 6910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18808890..18809975 | 1327..242 | 5415 | 99.9 | Minus |
2R | 25286936 | 2R | 18808615..18808778 | 1489..1326 | 820 | 100 | Minus |
2R | 25286936 | 2R | 18810041..18810178 | 242..105 | 690 | 100 | Minus |
2R | 25286936 | 2R | 18814604..18814692 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:06:03 has no hits.
BO18227.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:22 Download gff for
BO18227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 314..1791 | 12..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:44 Download gff for
BO18227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 329..1801 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:13 Download gff for
BO18227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 319..1791 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:17 Download gff for
BO18227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 329..1801 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:17 Download gff for
BO18227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18808613..18808776 | 1328..1491 | 98 | <- | Minus |
2R | 18808890..18809975 | 242..1327 | 99 | <- | Minus |
2R | 18810042..18810178 | 105..241 | 100 | <- | Minus |
2R | 18814604..18814691 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:44 Download gff for
BO18227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14696118..14696281 | 1328..1491 | 98 | <- | Minus |
arm_2R | 14696395..14697480 | 242..1327 | 99 | <- | Minus |
arm_2R | 14697547..14697683 | 105..241 | 100 | <- | Minus |
arm_2R | 14702109..14702196 | 17..104 | 100 | | Minus |
BO18227.pep Sequence
Translation from 16 to 1507
> BO18227.pep
MKLMCCGGSNGTMDMEAKNSNKEDEAVGKHSGLGVRHFQVLLLFFALTVA
YGCRVNLSVAVVAMTDAASVNPDFPEYNWSEKTKSLLLSSFFWGYVITQV
PAGQLARKYGGKVMILSGLAICSILNILTPICAKIGGWQLVCALRVVEGL
CQGVVFPSTHTILSQWAPPKERATLGTCAYSGNQFGTILMLATSGVIAAS
PIGWPSIFYISGGIGCVWSVVYFFFGAGSPQECKSISAEEKKLIEMSQAD
EVSGGQEQPKEQLPTPWLSFFTSPAFLVLIVSHSVHNWGFWTLLTEIPSY
MKNILGKDIKSNALLSSLPYVCMFAMSFVFSSISAQLNNRNCISRSTSRK
LFNSIGLWIPMVTLVGLGYVNPDQSELAVVLLCFTVGMNGATYLGFNTNH
IDLSPNFAGILMGITNGVANIMSIIAPLIVGFIVTNEHDPEQWRIVFFIA
AGFYLVGNTLYVIFGKANVQPWNDPPAKPRRNSTPQVESQHASFLDH
BO18227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-PC | 491 | CG15096-PC | 1..491 | 1..491 | 2586 | 100 | Plus |
CG15096-PA | 491 | CG15096-PA | 1..491 | 1..491 | 2586 | 100 | Plus |
CG15096-PB | 475 | CG15096-PB | 6..475 | 18..491 | 2429 | 98.3 | Plus |
MFS15-PA | 497 | CG15094-PA | 25..471 | 34..476 | 1325 | 56.3 | Plus |
MFS15-PB | 443 | CG15094-PB | 1..417 | 64..476 | 1219 | 55.4 | Plus |