Clone BO18227 Report

Search the DGRC for BO18227

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG15096-RA
Protein status:BO18227.pep: Imported from assembly
Sequenced Size:1507

Clone Sequence Records

BO18227.3prime Sequence

745 bp (621 high quality bases) assembled on 2006-10-13

> BO18227.3prime
ATGGTCTAGAAAGCTTGCGTGCTGCGACTCCACCTGGGGCGTGGAGTTGC
GACGAGGCTTCGCCGGAGGATCGTTCCAGGGCTGGACATTCGCCTTGCCG
AAGATCACGTACAGAGTATTGCCCACCAGGTAGAATCCGGCTGCAATGAA
GAACACAATGCGCCACTGCTCGGGATCGTGCTCATTTGTGACAATGAATC
CGACGATCAGCGGAGCAATGATGCTCATAATGTTGGCCACGCCGTTGGTG
ATGCCCATGAGGATGCCAGCGAAGTTGGGCGACAGATCGATGTGGTTCGT
GTTGAAGCCCAGGTAGGTCGCTCCATTCATGCCCACGGTGAAACAGAGTA
GGACCACAGCCAGTTCCGACTGATCTGGGTTCACATAGCCAAGGCCAACC
AAGGTGACCATAGGAATCCACAGACCAATGGAGTTGAAGAGCTTCCTGCT
CGTAGACCTTGAAATGCAGTTGCGGTTGTTCAACTGTGCGGATATCGACG
AGAATACAAAGGACATGGCGAACATGCAGACGTAGGGCAGCGAGGAGAGA
AGAGCATTCGACTTGATGTCCTTGCCCAGGATGTTCTTCATGTAGCTGGG
GATCTCGGTGAGCAGGGTCCAGAAACCCCAGTTGTGCACCGAGTGTGAGA
CGATTAGGACGAGGAAAGCGGGTGAAGTGAAGAAGCTCAGCCAGGGCGTG
GGCAACTGCTCCTTCGGCTGTTCCTGGCCACCGCTCACCTCGTCG

BO18227.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-PA 1476 CG15096-RA 747..1473 745..19 3610 99.8 Minus
CG15096-PB 1428 CG15096-RB 699..1425 745..19 3610 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-RC 3536 CG15096-RC 2551..3277 745..19 3620 99.9 Minus
CG15096-RB 1783 CG15096-RB 798..1524 745..19 3620 99.9 Minus
CG15096-RA 2060 CG15096-RA 1075..1801 745..19 3620 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18808890..18809454 181..745 2810 99.8 Plus
2R 25286936 2R 18808615..18808778 19..182 820 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:47:31 has no hits.

BO18227.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:07 Download gff for BO18227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-PB 699..1428 18..745 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:57:39 Download gff for BO18227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 1075..1801 19..745 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:57:50 Download gff for BO18227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 1075..1801 19..745 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:57:50 Download gff for BO18227.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18808612..18808776 18..180 98 <- Plus
2R 18808890..18809454 181..745 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:57:39 Download gff for BO18227.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14696117..14696281 18..180 98 <- Plus
arm_2R 14696395..14696959 181..745 99   Plus

BO18227.5prime Sequence

734 bp (691 high quality bases) assembled on 2006-10-13

> BO18227.5prime
GAAGTTATCATTCGACATGAAACTCATGTGTTGCGGTGGCAGCAATGGAA
CCATGGACATGGAAGCCAAAAACTCTAACAAAGAGGATGAGGCCGTGGGC
AAACACTCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTT
TGCCCTTACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGG
TGGCCATGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAAT
TGGTCGGAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTA
TGTGATCACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCA
AAGTGATGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTG
ACACCCATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACG
AGTGGTGGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGA
TCCTCTCCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGT
GCCTACTCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGG
AGTGATTGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTG
GAGGAATCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCAGGA
TCGCCACAAGAGTGCAAGTCCATTTCGGCGGAAG

BO18227.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-PA 1476 CG15096-RA 1..716 17..732 3580 100 Plus
CG15096-PB 1428 CG15096-RB 41..668 105..732 3140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-RC 3536 CG15096-RC 1804..2520 16..732 3585 100 Plus
CG15096-RA 2060 CG15096-RA 328..1044 16..732 3585 100 Plus
CG15096-RB 1783 CG15096-RB 140..767 105..732 3140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18809485..18809975 732..242 2455 100 Minus
2R 25286936 2R 18810041..18810178 242..105 690 100 Minus
2R 25286936 2R 18814604..18814692 104..16 445 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:20:58 has no hits.

BO18227.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:08 Download gff for BO18227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-PA 1..717 17..734 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:21 Download gff for BO18227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 324..1045 12..734 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:38:07 Download gff for BO18227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 324..1045 12..734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:38:07 Download gff for BO18227.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18814604..18814696 12..104 97   Minus
2R 18809483..18809975 242..734 99 <- Minus
2R 18810042..18810178 105..241 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:21 Download gff for BO18227.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14696988..14697480 242..734 99 <- Minus
arm_2R 14697547..14697683 105..241 100 <- Minus
arm_2R 14702109..14702201 12..104 97   Minus

BO18227.complete Sequence

1507 bp assembled on 2008-08-14

GenBank Submission: FJ634352

> BO18227.complete
GAAGTTATCATTCGACATGAAACTCATGTGTTGCGGTGGCAGCAATGGAA
CCATGGACATGGAAGCCAAAAACTCTAACAAAGAGGATGAGGCCGTGGGC
AAACACTCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTT
TGCCCTTACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGG
TGGCCATGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAAT
TGGTCGGAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTA
TGTGATCACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCA
AAGTGATGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTG
ACACCCATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACG
AGTGGTGGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGA
TCCTCTCCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGT
GCCTACTCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGG
AGTGATTGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTG
GAGGAATCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCAGGA
TCGCCACAAGAGTGCAAGTCCATTTCGGCGGAGGAGAAGAAGCTGATCGA
GATGTCGCAGGCCGACGAGGTGAGCGGTGGCCAGGAACAGCCGAAGGAGC
AGTTGCCCACGCCCTGGCTGAGCTTCTTCACTTCACCCGCTTTCCTCGTC
CTAATCGTCTCACACTCGGTGCACAACTGGGGTTTCTGGACCCTGCTCAC
CGAGATCCCCAGCTACATGAAGAACATCCTGGGCAAGGACATCAAGTCGA
ATGCTCTTCTCTCCTCGCTGCCCTACGTCTGCATGTTCGCCATGTCCTTT
GTATTCTCGTCGATATCCGCACAGTTGAACAACCGCAACTGCATTTCAAG
GTCTACGAGCAGGAAGCTCTTCAACTCCATTGGTCTGTGGATTCCTATGG
TCACCTTGGTTGGCCTTGGCTATGTGAACCCAGATCAGTCGGAACTGGCT
GTGGTCCTACTCTGTTTCACCGTGGGCATGAATGGAGCGACCTACCTGGG
CTTCAACACGAACCACATCGATCTGTCGCCCAACTTCGCTGGCATCCTCA
TGGGCATCACCAACGGCGTGGCCAACATTATGAGCATCATTGCTCCGCTG
ATCGTCGGATTCATTGTCACAAATGAGCACGATCCCGAGCAGTGGCGCAT
TGTGTTCTTCATTGCAGCCGGATTCTACCTGGTGGGCAATACTCTGTACG
TGATCTTCGGCAAGGCGAATGTCCAGCCCTGGAACGATCCTCCGGCGAAG
CCTCGTCGCAACTCCACGCCCCAGGTGGAGTCGCAGCACGCAAGCTTTCT
AGACCAT

BO18227.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-RC 1476 CG15096-PC 1..1473 17..1489 7350 99.9 Plus
CG15096-RA 1476 CG15096-PA 1..1473 17..1489 7350 99.9 Plus
CG15096-RB 1428 CG15096-PB 41..1425 105..1489 6910 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-RC 3536 CG15096-RC 1804..3277 16..1489 7355 99.9 Plus
CG15096-RA 2060 CG15096-RA 328..1801 16..1489 7355 99.9 Plus
CG15096-RB 1783 CG15096-RB 140..1524 105..1489 6910 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18808890..18809975 1327..242 5415 99.9 Minus
2R 25286936 2R 18808615..18808778 1489..1326 820 100 Minus
2R 25286936 2R 18810041..18810178 242..105 690 100 Minus
2R 25286936 2R 18814604..18814692 104..16 445 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:06:03 has no hits.

BO18227.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:22 Download gff for BO18227.complete
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 314..1791 12..1489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:44 Download gff for BO18227.complete
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 329..1801 17..1491 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:13 Download gff for BO18227.complete
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 319..1791 17..1491 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:17 Download gff for BO18227.complete
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 329..1801 17..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:17 Download gff for BO18227.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18808613..18808776 1328..1491 98 <- Minus
2R 18808890..18809975 242..1327 99 <- Minus
2R 18810042..18810178 105..241 100 <- Minus
2R 18814604..18814691 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:44 Download gff for BO18227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14696118..14696281 1328..1491 98 <- Minus
arm_2R 14696395..14697480 242..1327 99 <- Minus
arm_2R 14697547..14697683 105..241 100 <- Minus
arm_2R 14702109..14702196 17..104 100   Minus

BO18227.pep Sequence

Translation from 16 to 1507

> BO18227.pep
MKLMCCGGSNGTMDMEAKNSNKEDEAVGKHSGLGVRHFQVLLLFFALTVA
YGCRVNLSVAVVAMTDAASVNPDFPEYNWSEKTKSLLLSSFFWGYVITQV
PAGQLARKYGGKVMILSGLAICSILNILTPICAKIGGWQLVCALRVVEGL
CQGVVFPSTHTILSQWAPPKERATLGTCAYSGNQFGTILMLATSGVIAAS
PIGWPSIFYISGGIGCVWSVVYFFFGAGSPQECKSISAEEKKLIEMSQAD
EVSGGQEQPKEQLPTPWLSFFTSPAFLVLIVSHSVHNWGFWTLLTEIPSY
MKNILGKDIKSNALLSSLPYVCMFAMSFVFSSISAQLNNRNCISRSTSRK
LFNSIGLWIPMVTLVGLGYVNPDQSELAVVLLCFTVGMNGATYLGFNTNH
IDLSPNFAGILMGITNGVANIMSIIAPLIVGFIVTNEHDPEQWRIVFFIA
AGFYLVGNTLYVIFGKANVQPWNDPPAKPRRNSTPQVESQHASFLDH

BO18227.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-PC 491 CG15096-PC 1..491 1..491 2586 100 Plus
CG15096-PA 491 CG15096-PA 1..491 1..491 2586 100 Plus
CG15096-PB 475 CG15096-PB 6..475 18..491 2429 98.3 Plus
MFS15-PA 497 CG15094-PA 25..471 34..476 1325 56.3 Plus
MFS15-PB 443 CG15094-PB 1..417 64..476 1219 55.4 Plus