Clone Sequence Records
BO18228.5prime Sequence
443 bp (443 high quality bases) assembled on 2006-10-13
> BO18228.5prime
GAAGTTATCAGTCGACATGTTCCCGATATTCCCGCACCCGATGCCAACGA
ACTGGGCATCGATTTCGGAGAGGAGGAAGATGCCACCGACAAGCCACTGG
GCATATTCACGATCAAGGTGCGCCACATTCAGCCGGACCCCGCCCACTGC
GCCCAGCTCTCGCCACATCACCCACACCACCCCCAGTGCCACAGCTACTG
CAAACGCCAAGGTCACTGGGTGGGCCAGTGCAAGAAGGACATCTGTCAGT
GCTTTTCCTAGGTCTACTTCGACTGTAAGCCAAAACAGCGTTTTTTTTTT
TCTTTTGTTGAGTGCAGCACAACTATATGACGAAATATGTGCAAATATGT
TTATCTACCAACTAGTATATATATTAAAACTGGCAATGAACAATGAAAGC
GAATCAAAATTGCTCAAATCATACACAGCAAGCTTTCTAGACC
BO18228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12656-PA | 414 | CG12656-RA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34331-RB | 609 | CG34331-RB | 123..533 | 17..427 | 2055 | 100 | Plus |
| CG34331-RC | 599 | CG34331-RC | 123..223 | 17..117 | 505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20122575..20122985 | 17..427 | 2055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:37:27 has no hits.
BO18228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:08 Download gff for
BO18228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12656-PA | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:43 Download gff for
BO18228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34331-RB | 117..536 | 10..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:03 Download gff for
BO18228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34331-RB | 117..536 | 10..431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:03 Download gff for
BO18228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20122569..20122988 | 10..431 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:43 Download gff for
BO18228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20016602..20017021 | 10..431 | 99 | | Plus |
BO18228.complete Sequence
445 bp assembled on 2006-10-11
GenBank Submission: FJ634353
> BO18228.complete
GAAGTTATCAGTCGACATGTTCCCGATATTCCCGCACCCGATGCCAACGA
ACTGGGCATCGATTTCGGAGAGGAGGAAGATGCCACCGACAAGCCACTGG
GCATATTCACGATCAAGGTGCGCCACATTCAGCCGGACCCCGCCCACTGC
GCCCAGCTCTCGCCACATCACCCACACCACCCCCAGTGCCACAGCTACTG
CAAACGCCAAGGTCACTGGGTGGGCCAGTGCAAGAAGGACATCTGTCAGT
GCTTTTCCTAGGTCTACTTCGACTGTAAGCCAAAACAGCGTTTTTTTTTT
TCTTTTGTTGAGTGCAGCACAACTATATGACGAAATATGTGCAAATATGT
TTATCTACCAACTAGTATATATATTAAAACTGGCAATGAACAATGAAAGC
GAATCAAAATTGCTCAAATCATACACAGCAAGCTTTCTAGACCAT
BO18228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34331-RB | 336 | CG34331-PB | 92..336 | 17..261 | 1225 | 100 | Plus |
| CG34331-RC | 405 | CG34331-PC | 92..192 | 17..117 | 505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34331-RB | 609 | CG34331-RB | 123..533 | 17..427 | 2055 | 100 | Plus |
| CG34331-RC | 599 | CG34331-RC | 123..223 | 17..117 | 505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20122575..20122985 | 17..427 | 2055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:29:08 has no hits.
BO18228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:40 Download gff for
BO18228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34331-RA | 164..414 | 10..261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:24 Download gff for
BO18228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34331-RA | 164..583 | 10..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:05 Download gff for
BO18228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34331-RB | 128..533 | 22..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:40 Download gff for
BO18228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34331-RA | 164..583 | 10..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:28 Download gff for
BO18228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34331-RB | 128..533 | 22..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:28 Download gff for
BO18228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20122580..20122985 | 22..429 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:05 Download gff for
BO18228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20016613..20017018 | 22..429 | 99 | | Plus |
BO18228.pep Sequence
Translation from 16 to 445
> BO18228.pep
MFPIFPHPMPTNWASISERRKMPPTSHWAYSRSRCATFSRTPPTAPSSRH
ITHTTPSATATANAKVTGWASARRTSVSAFPRSTSTVSQNSVFFFLLLSA
AQLYDEICANMFIYQLVYILKLAMNNESESKLLKSYTASFLDH
Sequence BO18228.pep has no blast hits.
