Clone BO18230 Report

Search the DGRC for BO18230

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)37Ce-RA
Protein status:BO18230.pep: validated full length
Sequenced Size:589

Clone Sequence Records

BO18230.3prime Sequence

587 bp (587 high quality bases) assembled on 2006-10-13

> BO18230.3prime
ATGGTCTAGAAAGCTTGCAACCACGCTGCGCGCCTTCTTGGGATCGTAGT
TGGGCTTGCGTAGATGATGATAGTTTGGCAGGACCTTGCGCAGGAAGTCG
ATCTGCAGGGTCTGCGATCCCTGCTTGTCGATGGCCTCGCGCTGCAGGCC
CTGCTCTCCATAAACAATCGTGTTTTCGGGCAGGCGTTGACTACCATGGA
TCTTTATTCCAGCTCCCACCACACAACCGCTGGAAACAGTGACACCGGGG
CCCACATAGCACTTGCTCTCGAAGACGTTCTTATCGCCAATCTTGGCCGC
TTCCACTTGGCAGCCGACTTCAAAGACATTGTGAGTGCCAATGCTCAGGA
TATTGTTGACATCCCAAACGGCGCCCGGCTCCAAGCGGTGAGCTACGGTG
GCATATTCCTCTATGATGCAATTCTCCCCAATTATTATGGGACCTGCGTC
GGCGATAACGGTGGCACTCGGATGAACCACACAGCCCGACGAGAAGGTGA
TGTCACCGCGCAGGCTGCTCTCCTCGCAGACCACCGCCTTGGGTAGGATT
TTGATTCTGTTTTCCGAGGGCATGTCGACTGATAACT

BO18230.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17347-PA 558 CG17347-RA 1..555 573..19 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-RA 708 CG17347-RA 78..632 573..19 2775 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19132479..19133021 561..19 2715 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:29:56 has no hits.

BO18230.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:10 Download gff for BO18230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17347-PA 1..558 18..573 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:14 Download gff for BO18230.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 72..638 10..581 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:24 Download gff for BO18230.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 72..638 10..581 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:24 Download gff for BO18230.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19132484..19133027 10..556 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:14 Download gff for BO18230.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19132484..19133027 10..556 99   Minus

BO18230.5prime Sequence

587 bp (587 high quality bases) assembled on 2006-10-13

> BO18230.5prime
GAAGTTATCAGTCGACATGCCCTCGGAAAACAGAATCAAAATCCTACCCA
AGGCGGTGGTCTGCGAGGAGAGCAGCCTGCGCGGTGACATCACCTTCTCG
TCGGGCTGTGTGGTTCATCCGAGTGCCACCGTTATCGCCGACGCAGGTCC
CATAATAATTGGGGAGAATTGCATCATAGAGGAATATGCCACCGTAGCTC
ACCGCTTGGAGCCGGGCGCCGTTTGGGATGTCAACAATATCCTGAGCATT
GGCACTCACAATGTCTTTGAAGTCGGCTGCCAAGTGGAAGCGGCCAAGAT
TGGCGATAAGAACGTCTTCGAGAGCAAGTGCTATGTGGGCCCCGGTGTCA
CTGTTTCCAGCGGTTGTGTGGTGGGAGCTGGAATAAAGATCCATGGTAGT
CAACGCCTGCCCGAAAACACGATTGTTTATGGAGAGCAGGGCCTGCAGCG
CGAGGCCATCGACAAGCAGGGATCGCAGACCCTGCAGATCGACTTCCTGC
GCAAGGTCCTGCCAAACTATCATCATCTACGCAAGCCCAACTACGATCCC
AAGAAGGCGCGCAGCGTGGTTGCAAGCTTTCTAGACC

BO18230.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17347-PA 558 CG17347-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-RA 708 CG17347-RA 78..632 17..571 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19132479..19133021 29..571 2715 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:47:11 has no hits.

BO18230.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:10 Download gff for BO18230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17347-PA 1..558 17..572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:15 Download gff for BO18230.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 72..638 9..580 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:07 Download gff for BO18230.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 72..638 9..580 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:07 Download gff for BO18230.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19132484..19133027 34..580 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:15 Download gff for BO18230.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19132484..19133027 34..580 99   Plus

BO18230.complete Sequence

589 bp assembled on 2006-10-11

GenBank Submission: FJ634354

> BO18230.complete
GAAGTTATCAGTCGACATGCCCTCGGAAAACAGAATCAAAATCCTACCCA
AGGCGGTGGTCTGCGAGGAGAGCAGCCTGCGCGGTGACATCACCTTCTCG
TCGGGCTGTGTGGTTCATCCGAGTGCCACCGTTATCGCCGACGCAGGTCC
CATAATAATTGGGGAGAATTGCATCATAGAGGAATATGCCACCGTAGCTC
ACCGCTTGGAGCCGGGCGCCGTTTGGGATGTCAACAATATCCTGAGCATT
GGCACTCACAATGTCTTTGAAGTCGGCTGCCAAGTGGAAGCGGCCAAGAT
TGGCGATAAGAACGTCTTCGAGAGCAAGTGCTATGTGGGCCCCGGTGTCA
CTGTTTCCAGCGGTTGTGTGGTGGGAGCTGGAATAAAGATCCATGGTAGT
CAACGCCTGCCCGAAAACACGATTGTTTATGGAGAGCAGGGCCTGCAGCG
CGAGGCCATCGACAAGCAGGGATCGCAGACCCTGCAGATCGACTTCCTGC
GCAAGGTCCTGCCAAACTATCATCATCTACGCAAGCCCAACTACGATCCC
AAGAAGGCGCGCAGCGTGGTTGCAAGCTTTCTAGACCAT

BO18230.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-RA 558 CG17347-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-RA 708 CG17347-RA 78..632 17..571 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19132479..19133021 29..571 2715 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:46:25 has no hits.

BO18230.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:15 Download gff for BO18230.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 1..558 17..572 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:21 Download gff for BO18230.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 66..629 9..572 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:08 Download gff for BO18230.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 78..632 17..573 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:15 Download gff for BO18230.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 66..629 9..572 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:34 Download gff for BO18230.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Ce-RA 78..632 17..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:34 Download gff for BO18230.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19132400..19132416 17..33 100 -> Plus
2L 19132484..19133021 34..573 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:08 Download gff for BO18230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19132400..19132416 17..33 100 -> Plus
arm_2L 19132484..19133021 34..573 99   Plus

BO18230.pep Sequence

Translation from 16 to 589

> BO18230.pep
MPSENRIKILPKAVVCEESSLRGDITFSSGCVVHPSATVIADAGPIIIGE
NCIIEEYATVAHRLEPGAVWDVNNILSIGTHNVFEVGCQVEAAKIGDKNV
FESKCYVGPGVTVSSGCVVGAGIKIHGSQRLPENTIVYGEQGLQREAIDK
QGSQTLQIDFLRKVLPNYHHLRKPNYDPKKARSVVASFLDH

BO18230.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Ce-PA 185 CG17347-PA 1..185 1..185 967 100 Plus