Clone Sequence Records
BO18230.3prime Sequence
587 bp (587 high quality bases) assembled on 2006-10-13
> BO18230.3prime
ATGGTCTAGAAAGCTTGCAACCACGCTGCGCGCCTTCTTGGGATCGTAGT
TGGGCTTGCGTAGATGATGATAGTTTGGCAGGACCTTGCGCAGGAAGTCG
ATCTGCAGGGTCTGCGATCCCTGCTTGTCGATGGCCTCGCGCTGCAGGCC
CTGCTCTCCATAAACAATCGTGTTTTCGGGCAGGCGTTGACTACCATGGA
TCTTTATTCCAGCTCCCACCACACAACCGCTGGAAACAGTGACACCGGGG
CCCACATAGCACTTGCTCTCGAAGACGTTCTTATCGCCAATCTTGGCCGC
TTCCACTTGGCAGCCGACTTCAAAGACATTGTGAGTGCCAATGCTCAGGA
TATTGTTGACATCCCAAACGGCGCCCGGCTCCAAGCGGTGAGCTACGGTG
GCATATTCCTCTATGATGCAATTCTCCCCAATTATTATGGGACCTGCGTC
GGCGATAACGGTGGCACTCGGATGAACCACACAGCCCGACGAGAAGGTGA
TGTCACCGCGCAGGCTGCTCTCCTCGCAGACCACCGCCTTGGGTAGGATT
TTGATTCTGTTTTCCGAGGGCATGTCGACTGATAACT
BO18230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17347-PA | 558 | CG17347-RA | 1..555 | 573..19 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-RA | 708 | CG17347-RA | 78..632 | 573..19 | 2775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19132479..19133021 | 561..19 | 2715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:29:56 has no hits.
BO18230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:10 Download gff for
BO18230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17347-PA | 1..558 | 18..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:14 Download gff for
BO18230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 72..638 | 10..581 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:24 Download gff for
BO18230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 72..638 | 10..581 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:24 Download gff for
BO18230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19132484..19133027 | 10..556 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:14 Download gff for
BO18230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19132484..19133027 | 10..556 | 99 | | Minus |
BO18230.5prime Sequence
587 bp (587 high quality bases) assembled on 2006-10-13
> BO18230.5prime
GAAGTTATCAGTCGACATGCCCTCGGAAAACAGAATCAAAATCCTACCCA
AGGCGGTGGTCTGCGAGGAGAGCAGCCTGCGCGGTGACATCACCTTCTCG
TCGGGCTGTGTGGTTCATCCGAGTGCCACCGTTATCGCCGACGCAGGTCC
CATAATAATTGGGGAGAATTGCATCATAGAGGAATATGCCACCGTAGCTC
ACCGCTTGGAGCCGGGCGCCGTTTGGGATGTCAACAATATCCTGAGCATT
GGCACTCACAATGTCTTTGAAGTCGGCTGCCAAGTGGAAGCGGCCAAGAT
TGGCGATAAGAACGTCTTCGAGAGCAAGTGCTATGTGGGCCCCGGTGTCA
CTGTTTCCAGCGGTTGTGTGGTGGGAGCTGGAATAAAGATCCATGGTAGT
CAACGCCTGCCCGAAAACACGATTGTTTATGGAGAGCAGGGCCTGCAGCG
CGAGGCCATCGACAAGCAGGGATCGCAGACCCTGCAGATCGACTTCCTGC
GCAAGGTCCTGCCAAACTATCATCATCTACGCAAGCCCAACTACGATCCC
AAGAAGGCGCGCAGCGTGGTTGCAAGCTTTCTAGACC
BO18230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17347-PA | 558 | CG17347-RA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-RA | 708 | CG17347-RA | 78..632 | 17..571 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19132479..19133021 | 29..571 | 2715 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:47:11 has no hits.
BO18230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:10 Download gff for
BO18230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17347-PA | 1..558 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:15 Download gff for
BO18230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 72..638 | 9..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:07 Download gff for
BO18230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 72..638 | 9..580 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:07 Download gff for
BO18230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19132484..19133027 | 34..580 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:15 Download gff for
BO18230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19132484..19133027 | 34..580 | 99 | | Plus |
BO18230.complete Sequence
589 bp assembled on 2006-10-11
GenBank Submission: FJ634354
> BO18230.complete
GAAGTTATCAGTCGACATGCCCTCGGAAAACAGAATCAAAATCCTACCCA
AGGCGGTGGTCTGCGAGGAGAGCAGCCTGCGCGGTGACATCACCTTCTCG
TCGGGCTGTGTGGTTCATCCGAGTGCCACCGTTATCGCCGACGCAGGTCC
CATAATAATTGGGGAGAATTGCATCATAGAGGAATATGCCACCGTAGCTC
ACCGCTTGGAGCCGGGCGCCGTTTGGGATGTCAACAATATCCTGAGCATT
GGCACTCACAATGTCTTTGAAGTCGGCTGCCAAGTGGAAGCGGCCAAGAT
TGGCGATAAGAACGTCTTCGAGAGCAAGTGCTATGTGGGCCCCGGTGTCA
CTGTTTCCAGCGGTTGTGTGGTGGGAGCTGGAATAAAGATCCATGGTAGT
CAACGCCTGCCCGAAAACACGATTGTTTATGGAGAGCAGGGCCTGCAGCG
CGAGGCCATCGACAAGCAGGGATCGCAGACCCTGCAGATCGACTTCCTGC
GCAAGGTCCTGCCAAACTATCATCATCTACGCAAGCCCAACTACGATCCC
AAGAAGGCGCGCAGCGTGGTTGCAAGCTTTCTAGACCAT
BO18230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-RA | 558 | CG17347-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-RA | 708 | CG17347-RA | 78..632 | 17..571 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19132479..19133021 | 29..571 | 2715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:46:25 has no hits.
BO18230.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:15 Download gff for
BO18230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 1..558 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:21 Download gff for
BO18230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 66..629 | 9..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:08 Download gff for
BO18230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 78..632 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:15 Download gff for
BO18230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 66..629 | 9..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:34 Download gff for
BO18230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Ce-RA | 78..632 | 17..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:34 Download gff for
BO18230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19132400..19132416 | 17..33 | 100 | -> | Plus |
2L | 19132484..19133021 | 34..573 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:08 Download gff for
BO18230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19132400..19132416 | 17..33 | 100 | -> | Plus |
arm_2L | 19132484..19133021 | 34..573 | 99 | | Plus |
BO18230.pep Sequence
Translation from 16 to 589
> BO18230.pep
MPSENRIKILPKAVVCEESSLRGDITFSSGCVVHPSATVIADAGPIIIGE
NCIIEEYATVAHRLEPGAVWDVNNILSIGTHNVFEVGCQVEAAKIGDKNV
FESKCYVGPGVTVSSGCVVGAGIKIHGSQRLPENTIVYGEQGLQREAIDK
QGSQTLQIDFLRKVLPNYHHLRKPNYDPKKARSVVASFLDH
BO18230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Ce-PA | 185 | CG17347-PA | 1..185 | 1..185 | 967 | 100 | Plus |