Clone Sequence Records
BO18231.3prime Sequence
743 bp (723 high quality bases) assembled on 2006-10-13
> BO18231.3prime
ATGGTCTAGAAAGCTTGCCGTTATAGTTATTTTAAAAGTCCAGGCATAGT
CAAGACCTCTTTTATCGATGTGATTTTTAGGTGGAAACACGATGTGTAGC
CGGTTATGATCAGCATTCCACTTAATTTTGGTATCCTCCATGCCCAACAT
GACAACCTCAGTGCTTTGCTCATTCAGAATATCTCCACCGGTGCCCATAT
CGATTCCAGTCAGCATTACATTTCGGAATATATTGATATCCTTGCCAAGC
GGATAGATATCCAGTTCATTGGTGTCGTACGGATACTCCAGCACAAATGC
GTATATGGTGATTTTTCCATTGGATGCCTCCTTTTGCCGCGTATACCAAA
CATTTCCATTGATGGTATCATTCTGATAAATCCAGGGTACACTGCCGTAA
ATACCCTCGCCATTGAACTTCAGCCAGCGACCCATGTCCCTTAGACGCTC
CTCGAAAATGGGCAGTATGGTACCAAACTTGGTTGGTCCAACATTGATCA
GCACATTGCCATTACAGCTCACAGTGGTGATAATCTCTTTAATGACTTCC
TTGGAGGTCATAAAATCGGACAAAGAGACATCGAATCGCTGACCCCAGCT
GGTGCGATCCAGGGTGAAGGCATTTTCCCACTTGTGAGCTTGCAGAACAC
CGGGATTGAAGCGATCGGCACAATTGTAGAAGTCACCATGCATACACGCA
GTGCCCGAAGCCCCAGCGATCGTTGGTCACCACCGTATCCCTT
BO18231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6128-PA | 1485 | CG6128-RA | 759..1482 | 743..19 | 3585 | 99.8 | Minus |
CG6128-PB | 1485 | CG6128-RB | 759..1482 | 743..19 | 3585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 2675..3398 | 743..19 | 3600 | 99.9 | Minus |
Fuca-RC | 3513 | CG6128-RC | 2675..3398 | 743..19 | 3600 | 99.9 | Minus |
Fuca-RB | 1675 | CG6128-RB | 837..1560 | 743..19 | 3600 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11519079..11519496 | 121..538 | 2090 | 100 | Plus |
3L | 28110227 | 3L | 11519558..11519763 | 537..743 | 985 | 99.5 | Plus |
3L | 28110227 | 3L | 11518913..11519016 | 19..122 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:47:46 has no hits.
BO18231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:11 Download gff for
BO18231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6128-PB | 759..1485 | 18..743 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:57:43 Download gff for
BO18231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 837..1560 | 19..743 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:58:52 Download gff for
BO18231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 837..1560 | 19..743 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:58:52 Download gff for
BO18231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11518913..11519014 | 19..120 | 100 | <- | Plus |
3L | 11519079..11519494 | 121..536 | 100 | <- | Plus |
3L | 11519558..11519763 | 537..743 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:57:43 Download gff for
BO18231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11512013..11512114 | 19..120 | 100 | <- | Plus |
arm_3L | 11512179..11512594 | 121..536 | 100 | <- | Plus |
arm_3L | 11512658..11512863 | 537..743 | 99 | | Plus |
BO18231.5prime Sequence
783 bp (669 high quality bases) assembled on 2006-10-13
> BO18231.5prime
GAAGTTATCAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGG
CGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCG
GGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACC
ATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACG
GCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGG
AAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAA
GCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTAT
TCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATAT
GTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAA
GAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAG
TCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGA
CTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAA
ATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGG
AGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGAT
GGCGATTGGGAAGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCTCCGC
CTGGCTATATAATGATAATCCTGTAGGGGATAC
BO18231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6128-PA | 1485 | CG6128-RA | 1..767 | 17..783 | 3710 | 99.3 | Plus |
CG6128-PB | 1485 | CG6128-RB | 1..767 | 17..783 | 3710 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 1917..2683 | 17..783 | 3760 | 99.3 | Plus |
Fuca-RC | 3513 | CG6128-RC | 1917..2683 | 17..783 | 3760 | 99.3 | Plus |
Fuca-RB | 1675 | CG6128-RB | 79..845 | 17..783 | 3760 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11519755..11520034 | 783..504 | 1325 | 98.2 | Minus |
3L | 28110227 | 3L | 11520509..11520746 | 254..17 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 11520294..11520435 | 396..255 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11520106..11520214 | 503..395 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:21:21 has no hits.
BO18231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:12 Download gff for
BO18231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6128-PB | 1..767 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:30 Download gff for
BO18231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 74..845 | 10..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:40:45 Download gff for
BO18231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 74..845 | 10..783 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:40:45 Download gff for
BO18231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11519755..11520034 | 504..783 | 98 | <- | Minus |
3L | 11520106..11520212 | 397..503 | 100 | <- | Minus |
3L | 11520294..11520435 | 255..396 | 100 | <- | Minus |
3L | 11520509..11520751 | 10..254 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:30 Download gff for
BO18231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11513394..11513535 | 255..396 | 100 | <- | Minus |
arm_3L | 11513609..11513851 | 10..254 | 98 | | Minus |
arm_3L | 11513206..11513312 | 397..503 | 100 | <- | Minus |
arm_3L | 11512855..11513134 | 504..783 | 98 | <- | Minus |
BO18231.complete Sequence
1516 bp assembled on 2006-12-18
GenBank Submission: FJ634355
> BO18231.complete
GAAGTTATCAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGG
CGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCG
GGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACC
ATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACG
GCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGG
AAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAA
GCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTAT
TCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATAT
GTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAA
GAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAG
TCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGA
CTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAA
ATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGG
AGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGAT
GGCGATTGGGAGGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCATCGC
CTGGCTATATAATGATAGTCCTGTAAGGGATACGGTGGTGACCAACGATC
GCTGGGGCTTCGGCACTGCGTGTATGCATGGTGACTTCTACAATTGTGCC
GATCGCTTCAATCCCGGTGTTCTGCAAGCTCACAAGTGGGAAAATGCCTT
CACCCTGGATCGCACCAGCTGGGGTCAGCGATTCGATGTCTCTTTGTCCG
ATTTTATGACCTCCAAGGAAGTCATTAAAGAGATTATCACCACTGTGAGC
TGTAATGGCAATGTGCTGATCAATGTTGGACCAACCAAGTTTGGTACCAT
ACTGCCCATTTTCGAGGAGCGTCTAAGGGACATGGGTCGCTGGCTGAAGT
TCAATGGCGAGGGTATTTACGGCAGTGTACCCTGGATTTATCAGAATGAT
ACCATCAATGGAAATGTTTGGTATACGCGGCAAAAGGAGGCATCCAATGG
AAAAATCACCATATACGCATTTGTGCTGGAGTATCCGTACGACACCAATG
AACTGGATATCTATCCGCTTGGCAAGGATATCAATATATTCCGAAATGTA
ATGCTGACTGGAATCGATATGGGCACCGGTGGAGATATTCTGAATGAGCA
AAGCACTGAGGTTGTCATGTTGGGCATGGAGGATACCAAAATTAAGTGGA
ATGCTGATCATAACCGGCTACACATCGTGTTTCCACCTAAAAATCACATC
GATAAAAGAGGTCTTGACTATGCCTGGACTTTTAAAATAACTATAACGGC
AAGCTTTCTAGACCAT
BO18231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fuca-RC | 1485 | CG6128-PC | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Fuca-RB | 1485 | CG6128-PB | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 1917..3398 | 17..1498 | 7410 | 100 | Plus |
Fuca-RC | 3513 | CG6128-RC | 1917..3398 | 17..1498 | 7410 | 100 | Plus |
Fuca-RB | 1675 | CG6128-RB | 79..1560 | 17..1498 | 7410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11519558..11520034 | 980..504 | 2385 | 100 | Minus |
3L | 28110227 | 3L | 11519079..11519496 | 1396..979 | 2090 | 100 | Minus |
3L | 28110227 | 3L | 11520509..11520746 | 254..17 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 11520294..11520435 | 396..255 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11520106..11520214 | 503..395 | 545 | 100 | Minus |
3L | 28110227 | 3L | 11518913..11519016 | 1498..1395 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:54:57 has no hits.
BO18231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:45 Download gff for
BO18231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 1..1485 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:14 Download gff for
BO18231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 1912..3398 | 10..1498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:40 Download gff for
BO18231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 79..1560 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:45 Download gff for
BO18231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 1912..3398 | 10..1498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:41 Download gff for
BO18231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 79..1560 | 17..1500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:41 Download gff for
BO18231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11518911..11519014 | 1397..1500 | 98 | <- | Minus |
3L | 11519079..11519494 | 981..1396 | 100 | <- | Minus |
3L | 11519558..11520034 | 504..980 | 100 | <- | Minus |
3L | 11520106..11520212 | 397..503 | 100 | <- | Minus |
3L | 11520294..11520435 | 255..396 | 100 | <- | Minus |
3L | 11520509..11520746 | 17..254 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:40 Download gff for
BO18231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11512011..11512114 | 1397..1500 | 98 | <- | Minus |
arm_3L | 11512179..11512594 | 981..1396 | 100 | <- | Minus |
arm_3L | 11512658..11513134 | 504..980 | 100 | <- | Minus |
arm_3L | 11513206..11513312 | 397..503 | 100 | <- | Minus |
arm_3L | 11513394..11513535 | 255..396 | 100 | <- | Minus |
arm_3L | 11513609..11513846 | 17..254 | 100 | | Minus |
BO18231.pep Sequence
Translation from 16 to 1516
> BO18231.pep
MAISAWMPLLVALIVVWISAAEVDAQVPGPRTRYQPNWASLDQRPLPQWY
DDAKVGIFLHYGVYSVPSFGSEWFWTNWKNLRNPEYVQFMQRNYKPDFTY
QEFASQFTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLWPSKNSYGW
NSMDVGPKRDIVKELAAAIRKESDLRFGLYYSLFEWFNPLWTDDKLHLLM
QQHFVERKVRPEQMELVQQYLPEIIWSDGDWEAPAKYWRSEEFIAWLYND
SPVRDTVVTNDRWGFGTACMHGDFYNCADRFNPGVLQAHKWENAFTLDRT
SWGQRFDVSLSDFMTSKEVIKEIITTVSCNGNVLINVGPTKFGTILPIFE
ERLRDMGRWLKFNGEGIYGSVPWIYQNDTINGNVWYTRQKEASNGKITIY
AFVLEYPYDTNELDIYPLGKDINIFRNVMLTGIDMGTGGDILNEQSTEVV
MLGMEDTKIKWNADHNRLHIVFPPKNHIDKRGLDYAWTFKITITASFLDH
BO18231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fuca-PC | 494 | CG6128-PC | 1..494 | 1..494 | 2719 | 100 | Plus |
Fuca-PB | 494 | CG6128-PB | 1..494 | 1..494 | 2719 | 100 | Plus |