Clone BO18231 Report

Search the DGRC for BO18231

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptFuca-RB
Protein status:BO18231.pep: validated full length
Sequenced Size:1516

Clone Sequence Records

BO18231.3prime Sequence

743 bp (723 high quality bases) assembled on 2006-10-13

> BO18231.3prime
ATGGTCTAGAAAGCTTGCCGTTATAGTTATTTTAAAAGTCCAGGCATAGT
CAAGACCTCTTTTATCGATGTGATTTTTAGGTGGAAACACGATGTGTAGC
CGGTTATGATCAGCATTCCACTTAATTTTGGTATCCTCCATGCCCAACAT
GACAACCTCAGTGCTTTGCTCATTCAGAATATCTCCACCGGTGCCCATAT
CGATTCCAGTCAGCATTACATTTCGGAATATATTGATATCCTTGCCAAGC
GGATAGATATCCAGTTCATTGGTGTCGTACGGATACTCCAGCACAAATGC
GTATATGGTGATTTTTCCATTGGATGCCTCCTTTTGCCGCGTATACCAAA
CATTTCCATTGATGGTATCATTCTGATAAATCCAGGGTACACTGCCGTAA
ATACCCTCGCCATTGAACTTCAGCCAGCGACCCATGTCCCTTAGACGCTC
CTCGAAAATGGGCAGTATGGTACCAAACTTGGTTGGTCCAACATTGATCA
GCACATTGCCATTACAGCTCACAGTGGTGATAATCTCTTTAATGACTTCC
TTGGAGGTCATAAAATCGGACAAAGAGACATCGAATCGCTGACCCCAGCT
GGTGCGATCCAGGGTGAAGGCATTTTCCCACTTGTGAGCTTGCAGAACAC
CGGGATTGAAGCGATCGGCACAATTGTAGAAGTCACCATGCATACACGCA
GTGCCCGAAGCCCCAGCGATCGTTGGTCACCACCGTATCCCTT

BO18231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6128-PA 1485 CG6128-RA 759..1482 743..19 3585 99.8 Minus
CG6128-PB 1485 CG6128-RB 759..1482 743..19 3585 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 2675..3398 743..19 3600 99.9 Minus
Fuca-RC 3513 CG6128-RC 2675..3398 743..19 3600 99.9 Minus
Fuca-RB 1675 CG6128-RB 837..1560 743..19 3600 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11519079..11519496 121..538 2090 100 Plus
3L 28110227 3L 11519558..11519763 537..743 985 99.5 Plus
3L 28110227 3L 11518913..11519016 19..122 520 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:47:46 has no hits.

BO18231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:11 Download gff for BO18231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6128-PB 759..1485 18..743 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:57:43 Download gff for BO18231.3prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 837..1560 19..743 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:58:52 Download gff for BO18231.3prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 837..1560 19..743 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:58:52 Download gff for BO18231.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11518913..11519014 19..120 100 <- Plus
3L 11519079..11519494 121..536 100 <- Plus
3L 11519558..11519763 537..743 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:57:43 Download gff for BO18231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11512013..11512114 19..120 100 <- Plus
arm_3L 11512179..11512594 121..536 100 <- Plus
arm_3L 11512658..11512863 537..743 99   Plus

BO18231.5prime Sequence

783 bp (669 high quality bases) assembled on 2006-10-13

> BO18231.5prime
GAAGTTATCAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGG
CGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCG
GGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACC
ATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACG
GCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGG
AAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAA
GCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTAT
TCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATAT
GTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAA
GAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAG
TCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGA
CTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAA
ATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGG
AGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGAT
GGCGATTGGGAAGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCTCCGC
CTGGCTATATAATGATAATCCTGTAGGGGATAC

BO18231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6128-PA 1485 CG6128-RA 1..767 17..783 3710 99.3 Plus
CG6128-PB 1485 CG6128-RB 1..767 17..783 3710 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 1917..2683 17..783 3760 99.3 Plus
Fuca-RC 3513 CG6128-RC 1917..2683 17..783 3760 99.3 Plus
Fuca-RB 1675 CG6128-RB 79..845 17..783 3760 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11519755..11520034 783..504 1325 98.2 Minus
3L 28110227 3L 11520509..11520746 254..17 1190 100 Minus
3L 28110227 3L 11520294..11520435 396..255 710 100 Minus
3L 28110227 3L 11520106..11520214 503..395 545 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:21:21 has no hits.

BO18231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:12 Download gff for BO18231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6128-PB 1..767 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:30 Download gff for BO18231.5prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 74..845 10..783 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:40:45 Download gff for BO18231.5prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 74..845 10..783 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:40:45 Download gff for BO18231.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11519755..11520034 504..783 98 <- Minus
3L 11520106..11520212 397..503 100 <- Minus
3L 11520294..11520435 255..396 100 <- Minus
3L 11520509..11520751 10..254 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:30 Download gff for BO18231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11513394..11513535 255..396 100 <- Minus
arm_3L 11513609..11513851 10..254 98   Minus
arm_3L 11513206..11513312 397..503 100 <- Minus
arm_3L 11512855..11513134 504..783 98 <- Minus

BO18231.complete Sequence

1516 bp assembled on 2006-12-18

GenBank Submission: FJ634355

> BO18231.complete
GAAGTTATCAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGG
CGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCG
GGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACC
ATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACG
GCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGG
AAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAA
GCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTAT
TCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATAT
GTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAA
GAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAG
TCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGA
CTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAA
ATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGG
AGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGAT
GGCGATTGGGAGGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCATCGC
CTGGCTATATAATGATAGTCCTGTAAGGGATACGGTGGTGACCAACGATC
GCTGGGGCTTCGGCACTGCGTGTATGCATGGTGACTTCTACAATTGTGCC
GATCGCTTCAATCCCGGTGTTCTGCAAGCTCACAAGTGGGAAAATGCCTT
CACCCTGGATCGCACCAGCTGGGGTCAGCGATTCGATGTCTCTTTGTCCG
ATTTTATGACCTCCAAGGAAGTCATTAAAGAGATTATCACCACTGTGAGC
TGTAATGGCAATGTGCTGATCAATGTTGGACCAACCAAGTTTGGTACCAT
ACTGCCCATTTTCGAGGAGCGTCTAAGGGACATGGGTCGCTGGCTGAAGT
TCAATGGCGAGGGTATTTACGGCAGTGTACCCTGGATTTATCAGAATGAT
ACCATCAATGGAAATGTTTGGTATACGCGGCAAAAGGAGGCATCCAATGG
AAAAATCACCATATACGCATTTGTGCTGGAGTATCCGTACGACACCAATG
AACTGGATATCTATCCGCTTGGCAAGGATATCAATATATTCCGAAATGTA
ATGCTGACTGGAATCGATATGGGCACCGGTGGAGATATTCTGAATGAGCA
AAGCACTGAGGTTGTCATGTTGGGCATGGAGGATACCAAAATTAAGTGGA
ATGCTGATCATAACCGGCTACACATCGTGTTTCCACCTAAAAATCACATC
GATAAAAGAGGTCTTGACTATGCCTGGACTTTTAAAATAACTATAACGGC
AAGCTTTCTAGACCAT

BO18231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Fuca-RC 1485 CG6128-PC 1..1482 17..1498 7410 100 Plus
Fuca-RB 1485 CG6128-PB 1..1482 17..1498 7410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 1917..3398 17..1498 7410 100 Plus
Fuca-RC 3513 CG6128-RC 1917..3398 17..1498 7410 100 Plus
Fuca-RB 1675 CG6128-RB 79..1560 17..1498 7410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11519558..11520034 980..504 2385 100 Minus
3L 28110227 3L 11519079..11519496 1396..979 2090 100 Minus
3L 28110227 3L 11520509..11520746 254..17 1190 100 Minus
3L 28110227 3L 11520294..11520435 396..255 710 100 Minus
3L 28110227 3L 11520106..11520214 503..395 545 100 Minus
3L 28110227 3L 11518913..11519016 1498..1395 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:54:57 has no hits.

BO18231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:45 Download gff for BO18231.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 1..1485 17..1499 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:14 Download gff for BO18231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 1912..3398 10..1498 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:40 Download gff for BO18231.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 79..1560 17..1500 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:45 Download gff for BO18231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 1912..3398 10..1498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:41 Download gff for BO18231.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 79..1560 17..1500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:41 Download gff for BO18231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11518911..11519014 1397..1500 98 <- Minus
3L 11519079..11519494 981..1396 100 <- Minus
3L 11519558..11520034 504..980 100 <- Minus
3L 11520106..11520212 397..503 100 <- Minus
3L 11520294..11520435 255..396 100 <- Minus
3L 11520509..11520746 17..254 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:40 Download gff for BO18231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11512011..11512114 1397..1500 98 <- Minus
arm_3L 11512179..11512594 981..1396 100 <- Minus
arm_3L 11512658..11513134 504..980 100 <- Minus
arm_3L 11513206..11513312 397..503 100 <- Minus
arm_3L 11513394..11513535 255..396 100 <- Minus
arm_3L 11513609..11513846 17..254 100   Minus

BO18231.pep Sequence

Translation from 16 to 1516

> BO18231.pep
MAISAWMPLLVALIVVWISAAEVDAQVPGPRTRYQPNWASLDQRPLPQWY
DDAKVGIFLHYGVYSVPSFGSEWFWTNWKNLRNPEYVQFMQRNYKPDFTY
QEFASQFTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLWPSKNSYGW
NSMDVGPKRDIVKELAAAIRKESDLRFGLYYSLFEWFNPLWTDDKLHLLM
QQHFVERKVRPEQMELVQQYLPEIIWSDGDWEAPAKYWRSEEFIAWLYND
SPVRDTVVTNDRWGFGTACMHGDFYNCADRFNPGVLQAHKWENAFTLDRT
SWGQRFDVSLSDFMTSKEVIKEIITTVSCNGNVLINVGPTKFGTILPIFE
ERLRDMGRWLKFNGEGIYGSVPWIYQNDTINGNVWYTRQKEASNGKITIY
AFVLEYPYDTNELDIYPLGKDINIFRNVMLTGIDMGTGGDILNEQSTEVV
MLGMEDTKIKWNADHNRLHIVFPPKNHIDKRGLDYAWTFKITITASFLDH

BO18231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Fuca-PC 494 CG6128-PC 1..494 1..494 2719 100 Plus
Fuca-PB 494 CG6128-PB 1..494 1..494 2719 100 Plus