Clone Sequence Records
BO18232.3prime Sequence
728 bp (728 high quality bases) assembled on 2006-10-13
> BO18232.3prime
ATGGTCTAGAAAGCTTGCGGCCTGCAGGAAGTCTCCGAGATTGCCACATA
TTTTGTCGATTTCCGCACATCCCGATTGCTCCAGCGCTGAAATGGCATTG
GCGAGGGCCACGGTTTCTTTCAGGGAATGGGCCTTCAACCATATCCTGCC
GTTGACTCCCACAGCGATCTCGTAGGGCAGTTCCCGGGTAAGAGCGGCGA
GAACAGGGCAGTTTTCCCGCAGCAGCATCCTTCCCAGATTCAGGCTGCAC
TTGAAGAAGAATCCATCGGTGAGGACGCCCAGTTTGCCACTTTTGCCCAC
CGAGTTGACGCAGACCAGCTCCGGTTCAATGTCCGCGCTTGCATTCAGGA
CTCTCGCGTAAATCAGATCACCGGGGATCAGATCCGGGCGATTCTTCTTG
CTGGCCGCCTCAAAGGCGAGATACGATATGGAGGCTGTGTCCGTTGCTCC
GATGTCCACGCGGTACAGATCGCCCGCCTTGGCTCGCACAATGCCCAGAA
TGAGATCCCCGCGTGCCGGGATGTACCTTCTCTGGTAGTTGTCCACCCAG
AAGGTGCCGGGTTCCTTGTGTCGAAGTGGGCCCGCCTTGCTAGCCACCAC
CGTGTCATCCAGACGCCGCAGTCCCGGTCCGAGTATCACCCGCTTGCTCT
TGGCCAGCTCCTCAATGGCCGCAATTCGCTCACCGGGCATAACTATTGTG
CTGGTCGCGCTCATGTCGACTGATAACT
BO18232.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31938-PA | 699 | CG31938-RA | 1..696 | 714..19 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-RB | 1031 | CG31938-RB | 98..793 | 714..19 | 3480 | 100 | Minus |
| Rrp40-RA | 844 | CG31938-RA | 98..793 | 714..19 | 3480 | 100 | Minus |
| Eno-RE | 2664 | CG17654-RE | 113..362 | 19..268 | 1250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1728829..1729524 | 714..19 | 3480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:55:33 has no hits.
BO18232.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:13 Download gff for
BO18232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:50 Download gff for
BO18232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 11..722 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:22 Download gff for
BO18232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 11..722 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:22 Download gff for
BO18232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1728822..1729531 | 11..722 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:50 Download gff for
BO18232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1728822..1729531 | 11..722 | 98 | | Minus |
BO18232.5prime Sequence
728 bp (728 high quality bases) assembled on 2006-10-13
> BO18232.5prime
GAAGTTATCAGTCGACATGAGCGCGACCAGCACAATAGTTATGCCCGGTG
AGCGAATTGCGGCCATTGAGGAGCTGGCCAAGAGCAAGCGGGTGATACTC
GGACCGGGACTGCGGCGTCTGGATGACACGGTGGTGGCTAGCAAGGCGGG
CCCACTTCGACACAAGGAACCCGGCACCTTCTGGGTGGACAACTACCAGA
GAAGGTACATCCCGGCACGCGGGGATCTCATTCTGGGCATTGTGCGAGCC
AAGGCGGGCGATCTGTACCGCGTGGACATCGGAGCAACGGACACAGCCTC
CATATCGTATCTCGCCTTTGAGGCGGCCAGCAAGAAGAATCGCCCGGATC
TGATCCCCGGTGATCTGATTTACGCGAGAGTCCTGAATGCAAGCGCGGAC
ATTGAACCGGAGCTGGTCTGCGTCAACTCGGTGGGCAAAAGTGGCAAACT
GGGCGTCCTCACCGATGGATTCTTCTTCAAGTGCAGCCTGAATCTGGGAA
GGATGCTGCTGCGGGAAAACTGCCCTGTTCTCGCCGCTCTTACCCGGGAA
CTGCCCTACGAGATCGCTGTGGGAGTCAACGGCAGGATATGGTTGAAGGC
CCATTCCCTGAAAGAAACCGTGGCCCTCGCCAATGCCATTTCAGCGCTGG
AGCAATCGGGATGTGCGGAAATCGACAAAATATGTGGCAATCTCGGAGAC
TTCCTGCAGGCCGCAAGCTTTCTAGACC
BO18232.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31938-PA | 699 | CG31938-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-RB | 1031 | CG31938-RB | 98..793 | 17..712 | 3480 | 100 | Plus |
| Rrp40-RA | 844 | CG31938-RA | 98..793 | 17..712 | 3480 | 100 | Plus |
| Eno-RE | 2664 | CG17654-RE | 113..362 | 712..463 | 1250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1728829..1729524 | 17..712 | 3480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:23:01 has no hits.
BO18232.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:13 Download gff for
BO18232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:43 Download gff for
BO18232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 9..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:13 Download gff for
BO18232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 9..720 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:13 Download gff for
BO18232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1728822..1729531 | 9..720 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:43 Download gff for
BO18232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1728822..1729531 | 9..720 | 98 | | Plus |
BO18232.complete Sequence
730 bp assembled on 2006-10-11
GenBank Submission: FJ634356
> BO18232.complete
GAAGTTATCAGTCGACATGAGCGCGACCAGCACAATAGTTATGCCCGGTG
AGCGAATTGCGGCCATTGAGGAGCTGGCCAAGAGCAAGCGGGTGATACTC
GGACCGGGACTGCGGCGTCTGGATGACACGGTGGTGGCTAGCAAGGCGGG
CCCACTTCGACACAAGGAACCCGGCACCTTCTGGGTGGACAACTACCAGA
GAAGGTACATCCCGGCACGCGGGGATCTCATTCTGGGCATTGTGCGAGCC
AAGGCGGGCGATCTGTACCGCGTGGACATCGGAGCAACGGACACAGCCTC
CATATCGTATCTCGCCTTTGAGGCGGCCAGCAAGAAGAATCGCCCGGATC
TGATCCCCGGTGATCTGATTTACGCGAGAGTCCTGAATGCAAGCGCGGAC
ATTGAACCGGAGCTGGTCTGCGTCAACTCGGTGGGCAAAAGTGGCAAACT
GGGCGTCCTCACCGATGGATTCTTCTTCAAGTGCAGCCTGAATCTGGGAA
GGATGCTGCTGCGGGAAAACTGCCCTGTTCTCGCCGCTCTTACCCGGGAA
CTGCCCTACGAGATCGCTGTGGGAGTCAACGGCAGGATATGGTTGAAGGC
CCATTCCCTGAAAGAAACCGTGGCCCTCGCCAATGCCATTTCAGCGCTGG
AGCAATCGGGATGTGCGGAAATCGACAAAATATGTGGCAATCTCGGAGAC
TTCCTGCAGGCCGCAAGCTTTCTAGACCAT
BO18232.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-RB | 699 | CG31938-PB | 1..696 | 17..712 | 3480 | 100 | Plus |
| Rrp40-RA | 699 | CG31938-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-RB | 1031 | CG31938-RB | 98..793 | 17..712 | 3480 | 100 | Plus |
| Rrp40-RA | 844 | CG31938-RA | 98..793 | 17..712 | 3480 | 100 | Plus |
| Eno-RE | 2664 | CG17654-RE | 113..362 | 712..463 | 1250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1728829..1729524 | 17..712 | 3480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:05:24 has no hits.
BO18232.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:16 Download gff for
BO18232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-RA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:23 Download gff for
BO18232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-RA | 88..793 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:55 Download gff for
BO18232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 98..793 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:16 Download gff for
BO18232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-RA | 88..793 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:42 Download gff for
BO18232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 98..793 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:42 Download gff for
BO18232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1728829..1729524 | 17..714 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:55 Download gff for
BO18232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1728829..1729524 | 17..714 | 99 | | Plus |
BO18232.pep Sequence
Translation from 16 to 730
> BO18232.pep
MSATSTIVMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHK
EPGTFWVDNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLA
FEAASKKNRPDLIPGDLIYARVLNASADIEPELVCVNSVGKSGKLGVLTD
GFFFKCSLNLGRMLLRENCPVLAALTRELPYEIAVGVNGRIWLKAHSLKE
TVALANAISALEQSGCAEIDKICGNLGDFLQAASFLDH
BO18232.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-PB | 232 | CG31938-PB | 1..232 | 1..232 | 1176 | 100 | Plus |
| Rrp40-PA | 232 | CG31938-PA | 1..232 | 1..232 | 1176 | 100 | Plus |
