Clone BO18237 Report

Search the DGRC for BO18237

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG4901-RA
Protein status:BO18237.pep: validated full length
Sequenced Size:2116

Clone Sequence Records

BO18237.3prime Sequence

650 bp (597 high quality bases) assembled on 2006-10-13

> BO18237.3prime
ATGGTCTAGAAAGCTTGCTCTTGTTGGTATGTTTTTAACAAACGGCACAA
CCTCCTTGATCCATTCGATGGATATTTCCGTGACTTGGCGTAGAAACGTT
TGCTCCGTCTGCACAATTTCGGTGAAGAGTATGTAGCTCGGCTTGTACTT
TCCGTGCAGAACGCTCGACGGATGGATTTTGGACCTGATGTTGCCGGAAG
CGGTTATGTAGAAGCCATCGCGTTGCAGAACGGCAATATTTTCAAAGAAT
CCATTTAAAATGCATTTCTTCAACATTTCAATGTCATCCGAGCTATTTAG
AGCCAAATGCAAGTGCTCGCTTATTTCCCTCAATTGTCGGCGAACATTTC
GTGCATAGGTTAAACTACGCAAATTTAAATAGTTGTCGTGACACCACATC
TTTGGCTTTTCGCTTTTCAAAAACCCATTGAACACATTCAGCAGCGTCAA
ATGATCACCATGCTTGGACTGAAACTTGGCGTGAGCTAGTGCAGCCATTT
CGTTTTTTTCGCTATTCGAGACGAAGACGTGATCGCTTGAGAGAACGGAA
ACAAGGCTCAGGATCTCCTCCATGCAGCCGAACGATGAAGCAGTAAGCAG
TAACTTTGAGTACTTGGGATCCAAGGGATACTGCACCATTTGCCGACCCA

BO18237.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-PA 2085 CG4901-RA 1451..2082 650..19 3135 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-RA 2246 CG4901-RA 1588..2219 650..19 3145 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10213312..10213694 401..19 1915 100 Minus
2L 23513712 2L 10213000..10213250 650..400 1240 99.6 Minus
Blast to na_te.dros performed on 2015-02-13 13:40:22 has no hits.

BO18237.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:16 Download gff for BO18237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-PA 1452..2085 16..649 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:45 Download gff for BO18237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 1589..2223 15..649 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:00 Download gff for BO18237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 1589..2223 15..649 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:00 Download gff for BO18237.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10213001..10213250 400..649 99 -> Minus
2L 10213314..10213698 15..399 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:45 Download gff for BO18237.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10213001..10213250 400..649 99 -> Minus
arm_2L 10213314..10213698 15..399 99   Minus

BO18237.5prime Sequence

715 bp (689 high quality bases) assembled on 2006-10-13

> BO18237.5prime
GAAGTTATCAGTCGACATGGACTCCAAATACTTTGCAACCAGCAGAAACG
ATGCTGTAGGTCCATCGCCTGTGAAGTTCTCCTTCAAGCGGAAGTACGAT
GCCATGGCGAACAGTCCCATACTGGAGAAGAAACCCCATGTGGCCCAAAT
CAAGCAGACAATAGCTCCCATTCTGCTGACCAGCAAAAGAACCTCCATTG
AACAGCAGCAAAAATCACTGCCTGTCTTTAATTGCCGCCATCGAATCCTC
AAGGAACTGGAAGCGAACGACACCGTGCTAATCATGAGCGAGACGGGCTC
GGGCAAGACCACACAGATACCACAGTTCCTGCTGCTGGCTGGTTACGCCA
AGAACGGAATGATCGGAATCACCCAGCCGCGCAGAGTGGCGGCCATAACA
GTGGCACGTCGCGTGGCCCAGGAGTTGAACGGAACCATTGGCGACACGGT
GGGCTATACGGTGCGTTTCGAGGATGTCACCTCAAGGGCCACAAAGATTC
GATTCCTTACCGACGGCGTTTTGCTGCGCGAGTCCATTAAGGATCGACTA
CTGCTCAAATATTCTGTGATTATTCTGGACGAGGCTCACGAGCGAACCGT
GAACGCAGACCTACTATTCGGGATAGTCAAAGATGCTCAAAAGGAGAGGC
GTAAGCAAAAGTTGGCCAACCTAAAGGTAGTGGTTACATCTGGCACGATG
GATATCGATTCACTT

BO18237.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-PA 2085 CG4901-RA 1..693 17..709 3440 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-RA 2246 CG4901-RA 138..835 17..715 3455 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10211422..10212114 17..709 3450 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 18:13:13 has no hits.

BO18237.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:17 Download gff for BO18237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-PA 1..698 17..715 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:48:46 Download gff for BO18237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 138..835 17..715 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:07 Download gff for BO18237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 138..835 17..715 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:07 Download gff for BO18237.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10211422..10212119 17..715 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:48:46 Download gff for BO18237.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10211422..10212119 17..715 99   Plus

BO18237.complete Sequence

2116 bp assembled on 2006-12-18

GenBank Submission: FJ634357

> BO18237.complete
GAAGTTATCAGTCGACATGGACTCCAAATACTTTGCAACCAGCAGAAACG
ATGCTGTAGGTCCATCGCCTGTGAAGTTCTCCTTCAAGCGGAAGTACGAT
GCCATGGCGAACAGTCCCATACTGGAGAAGAAACCCCATGTGGCCCAAAT
CAAGCAGACAATAGCTCCCATTCTGCTGACCAGCAAAAGAACCTCCATTG
AACAGCAGCAAAAATCACTGCCTGTCTTTAATTGCCGCCATCGAATCCTC
AAGGAACTGGAAGCGAACGACACCGTGCTAATCATGAGCGAGACGGGCTC
GGGCAAGACCACACAGATACCACAGTTCCTGCTGCTGGCTGGTTACGCCA
AGAACGGAATGATCGGAATCACCCAGCCGCGCAGAGTGGCGGCCATAACA
GTGGCACGTCGCGTGGCCCAGGAGTTGAACGGAACCATTGGCGACACGGT
GGGCTATACGGTGCGTTTCGAGGATGTCACCTCAAGGGCCACAAAGATTC
GATTCCTTACCGACGGCGTTTTGCTGCGCGAGTCCATTAAGGATCGACTA
CTGCTCAAATATTCTGTGATTATTCTGGACGAGGCTCACGAGCGAACCGT
GAACGCAGACCTACTATTCGGGATAGTCAAAGATGCTCAAAAGGAGAGGC
GTAAGCAAAAGTTGGCCAACCTAAAGGTAGTGGTTACATCTGCCACGATG
GATATCGATCACTTCGGAAATTACTTTAATTGCAAGGGCATGTACCTGGA
GGGACGGACGTATCCGGTCCGTGTGATGCACACCAAGGAGGAGCACGAAG
ATTACATCCACACCGTGCTGGTTACCCTCTTTCACATACACCGCACCACT
CCGAAAAACCACGACGTGTTGATATTCCTAACCGGGCAAGAGGAAATCGA
GTCATTGGCCCAACAAATACGCCAGCTTGCCAAGATTGACACGACTGGAA
CAACAGATCTCCGCGTATTCACGTTGTATGCTCAGCTATCGCAGGGCAAG
CAATTGGAGTGTTTTGTGCCGACACCGGCCAACGTACGCAAAGTAATCTT
GGCCACAAATATAGCAGAAACGTCGATCACCATACCGGGCATCCGTTGTG
TGATTGACTGTGGCTTTGTGAAGGAGAAATCGTTCAATACCGTCGACGGA
CTGGATGTCTTAAAGTCAGTTCGAATATCTAAGGCGCAAGCCTGGCAGAG
AGCTGGACGAGCAGGTCGCGATGCGGATGGAACCTGCTACAGGGCGTACA
CAAAAGCTGAAATGGACTCCTTTGCAGATGCAACTCAGCCAGAAATCCTG
AGAACAAATCCAACGTCAATGGTGCTGCAGCTCCTCGCCCTGGACATTGA
TTGCAACAATTTCGACTTCCTAGACCCGCCACTTGAAGATGGACTGCGCA
GTGCGTATAAGAGCCTCGATGCCCTGGGGGCTATTAAGACTGGAGATGAC
TCATACATTACACCGCTGGGTCGGCAAATGGTGCAGTATCCCTTGGATCC
CAAGTACTCAAAGCTACTGCTTACTGCTTCATCGTTCGGCTGCATGGAGG
AGATCCTGAGCCTTGTTTCCGTTCTCTCAAGCGATCACGTCTTCGTCTCG
AATAGCGAAAAAAACGAAATGGCTGCACTAGCTCACGCCAAGTTTCAGTC
CAAGCATGGTGATCATTTGACGCTGCTGAATGTGTTCAATGGGTTTTTGA
AAAGCGAAAAGCCAAAGATGTGGTGTCACGACAACTATTTAAATTTGCGT
AGTTTAACCTATGCACGAAATGTTCGCCGACAATTGAGGGAAATAAGCGA
GCACTTGCATTTGGCTCTAAATAGCTCGGATGACATTGAAATGTTGAAGA
AATGCATTTTAAATGGATTCTTTGAAAATATTGCCGTTCTGCAACGCGAT
GGCTTCTACATAACCGCTTCCGGCAACATCAGGTCCAAAATCCATCCGTC
GAGCGTTCTGCACGGAAAGTACAAGCCGAGCTACATACTCTTCACCGAAA
TTGTGCAGACGGAGCAAACGTTTCTACGCCAAGTCACGGAAATATCCATC
GAATGGATCAAGGAGGTTGTGCCGTTTGTTAAAAACATACCAACAAGAGC
AAGCTTTCTAGACCAT

BO18237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-RA 2085 CG4901-PA 1..2082 17..2098 10410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-RA 2246 CG4901-RA 138..2219 17..2098 10410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10211422..10212263 17..858 4210 100 Plus
2L 23513712 2L 10212466..10213250 933..1717 3925 100 Plus
2L 23513712 2L 10213312..10213694 1716..2098 1915 100 Plus
2L 23513712 2L 10212327..10212402 859..934 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:54:01 has no hits.

BO18237.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:46 Download gff for BO18237.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 1..2085 17..2101 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:15 Download gff for BO18237.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 125..2210 17..2102 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:25 Download gff for BO18237.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 138..2219 17..2100 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:46 Download gff for BO18237.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 125..2210 17..2102 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:23 Download gff for BO18237.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 138..2219 17..2100 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:23 Download gff for BO18237.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10211422..10212263 17..858 100 -> Plus
2L 10212327..10212402 859..934 100 -> Plus
2L 10212468..10213250 935..1717 100 -> Plus
2L 10213314..10213694 1718..2100 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:25 Download gff for BO18237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10211422..10212263 17..858 100 -> Plus
arm_2L 10212327..10212402 859..934 100 -> Plus
arm_2L 10212468..10213250 935..1717 100 -> Plus
arm_2L 10213314..10213694 1718..2100 99   Plus

BO18237.pep Sequence

Translation from 16 to 2116

> BO18237.pep
MDSKYFATSRNDAVGPSPVKFSFKRKYDAMANSPILEKKPHVAQIKQTIA
PILLTSKRTSIEQQQKSLPVFNCRHRILKELEANDTVLIMSETGSGKTTQ
IPQFLLLAGYAKNGMIGITQPRRVAAITVARRVAQELNGTIGDTVGYTVR
FEDVTSRATKIRFLTDGVLLRESIKDRLLLKYSVIILDEAHERTVNADLL
FGIVKDAQKERRKQKLANLKVVVTSATMDIDHFGNYFNCKGMYLEGRTYP
VRVMHTKEEHEDYIHTVLVTLFHIHRTTPKNHDVLIFLTGQEEIESLAQQ
IRQLAKIDTTGTTDLRVFTLYAQLSQGKQLECFVPTPANVRKVILATNIA
ETSITIPGIRCVIDCGFVKEKSFNTVDGLDVLKSVRISKAQAWQRAGRAG
RDADGTCYRAYTKAEMDSFADATQPEILRTNPTSMVLQLLALDIDCNNFD
FLDPPLEDGLRSAYKSLDALGAIKTGDDSYITPLGRQMVQYPLDPKYSKL
LLTASSFGCMEEILSLVSVLSSDHVFVSNSEKNEMAALAHAKFQSKHGDH
LTLLNVFNGFLKSEKPKMWCHDNYLNLRSLTYARNVRRQLREISEHLHLA
LNSSDDIEMLKKCILNGFFENIAVLQRDGFYITASGNIRSKIHPSSVLHG
KYKPSYILFTEIVQTEQTFLRQVTEISIEWIKEVVPFVKNIPTRASFLDH

BO18237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-PA 694 CG4901-PA 1..694 1..694 3548 100 Plus
pea-PA 1242 CG8241-PA 578..1211 60..696 1219 41.8 Plus
l(2)37Cb-PA 894 CG10689-PA 241..867 57..686 1201 41.8 Plus
CG11107-PB 729 CG11107-PB 64..696 60..686 1176 40.4 Plus
CG11107-PA 729 CG11107-PA 64..696 60..686 1176 40.4 Plus