Clone Sequence Records
BO18237.3prime Sequence
650 bp (597 high quality bases) assembled on 2006-10-13
> BO18237.3prime
ATGGTCTAGAAAGCTTGCTCTTGTTGGTATGTTTTTAACAAACGGCACAA
CCTCCTTGATCCATTCGATGGATATTTCCGTGACTTGGCGTAGAAACGTT
TGCTCCGTCTGCACAATTTCGGTGAAGAGTATGTAGCTCGGCTTGTACTT
TCCGTGCAGAACGCTCGACGGATGGATTTTGGACCTGATGTTGCCGGAAG
CGGTTATGTAGAAGCCATCGCGTTGCAGAACGGCAATATTTTCAAAGAAT
CCATTTAAAATGCATTTCTTCAACATTTCAATGTCATCCGAGCTATTTAG
AGCCAAATGCAAGTGCTCGCTTATTTCCCTCAATTGTCGGCGAACATTTC
GTGCATAGGTTAAACTACGCAAATTTAAATAGTTGTCGTGACACCACATC
TTTGGCTTTTCGCTTTTCAAAAACCCATTGAACACATTCAGCAGCGTCAA
ATGATCACCATGCTTGGACTGAAACTTGGCGTGAGCTAGTGCAGCCATTT
CGTTTTTTTCGCTATTCGAGACGAAGACGTGATCGCTTGAGAGAACGGAA
ACAAGGCTCAGGATCTCCTCCATGCAGCCGAACGATGAAGCAGTAAGCAG
TAACTTTGAGTACTTGGGATCCAAGGGATACTGCACCATTTGCCGACCCA
BO18237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4901-PA | 2085 | CG4901-RA | 1451..2082 | 650..19 | 3135 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4901-RA | 2246 | CG4901-RA | 1588..2219 | 650..19 | 3145 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10213312..10213694 | 401..19 | 1915 | 100 | Minus |
2L | 23513712 | 2L | 10213000..10213250 | 650..400 | 1240 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:40:22 has no hits.
BO18237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:16 Download gff for
BO18237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-PA | 1452..2085 | 16..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:45 Download gff for
BO18237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-RA | 1589..2223 | 15..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:00 Download gff for
BO18237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-RA | 1589..2223 | 15..649 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:00 Download gff for
BO18237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10213001..10213250 | 400..649 | 99 | -> | Minus |
2L | 10213314..10213698 | 15..399 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:45 Download gff for
BO18237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10213001..10213250 | 400..649 | 99 | -> | Minus |
arm_2L | 10213314..10213698 | 15..399 | 99 | | Minus |
BO18237.5prime Sequence
715 bp (689 high quality bases) assembled on 2006-10-13
> BO18237.5prime
GAAGTTATCAGTCGACATGGACTCCAAATACTTTGCAACCAGCAGAAACG
ATGCTGTAGGTCCATCGCCTGTGAAGTTCTCCTTCAAGCGGAAGTACGAT
GCCATGGCGAACAGTCCCATACTGGAGAAGAAACCCCATGTGGCCCAAAT
CAAGCAGACAATAGCTCCCATTCTGCTGACCAGCAAAAGAACCTCCATTG
AACAGCAGCAAAAATCACTGCCTGTCTTTAATTGCCGCCATCGAATCCTC
AAGGAACTGGAAGCGAACGACACCGTGCTAATCATGAGCGAGACGGGCTC
GGGCAAGACCACACAGATACCACAGTTCCTGCTGCTGGCTGGTTACGCCA
AGAACGGAATGATCGGAATCACCCAGCCGCGCAGAGTGGCGGCCATAACA
GTGGCACGTCGCGTGGCCCAGGAGTTGAACGGAACCATTGGCGACACGGT
GGGCTATACGGTGCGTTTCGAGGATGTCACCTCAAGGGCCACAAAGATTC
GATTCCTTACCGACGGCGTTTTGCTGCGCGAGTCCATTAAGGATCGACTA
CTGCTCAAATATTCTGTGATTATTCTGGACGAGGCTCACGAGCGAACCGT
GAACGCAGACCTACTATTCGGGATAGTCAAAGATGCTCAAAAGGAGAGGC
GTAAGCAAAAGTTGGCCAACCTAAAGGTAGTGGTTACATCTGGCACGATG
GATATCGATTCACTT
BO18237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4901-PA | 2085 | CG4901-RA | 1..693 | 17..709 | 3440 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4901-RA | 2246 | CG4901-RA | 138..835 | 17..715 | 3455 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10211422..10212114 | 17..709 | 3450 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:13:13 has no hits.
BO18237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:17 Download gff for
BO18237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-PA | 1..698 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:48:46 Download gff for
BO18237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-RA | 138..835 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:07 Download gff for
BO18237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-RA | 138..835 | 17..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:07 Download gff for
BO18237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10211422..10212119 | 17..715 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:48:46 Download gff for
BO18237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10211422..10212119 | 17..715 | 99 | | Plus |
BO18237.complete Sequence
2116 bp assembled on 2006-12-18
GenBank Submission: FJ634357
> BO18237.complete
GAAGTTATCAGTCGACATGGACTCCAAATACTTTGCAACCAGCAGAAACG
ATGCTGTAGGTCCATCGCCTGTGAAGTTCTCCTTCAAGCGGAAGTACGAT
GCCATGGCGAACAGTCCCATACTGGAGAAGAAACCCCATGTGGCCCAAAT
CAAGCAGACAATAGCTCCCATTCTGCTGACCAGCAAAAGAACCTCCATTG
AACAGCAGCAAAAATCACTGCCTGTCTTTAATTGCCGCCATCGAATCCTC
AAGGAACTGGAAGCGAACGACACCGTGCTAATCATGAGCGAGACGGGCTC
GGGCAAGACCACACAGATACCACAGTTCCTGCTGCTGGCTGGTTACGCCA
AGAACGGAATGATCGGAATCACCCAGCCGCGCAGAGTGGCGGCCATAACA
GTGGCACGTCGCGTGGCCCAGGAGTTGAACGGAACCATTGGCGACACGGT
GGGCTATACGGTGCGTTTCGAGGATGTCACCTCAAGGGCCACAAAGATTC
GATTCCTTACCGACGGCGTTTTGCTGCGCGAGTCCATTAAGGATCGACTA
CTGCTCAAATATTCTGTGATTATTCTGGACGAGGCTCACGAGCGAACCGT
GAACGCAGACCTACTATTCGGGATAGTCAAAGATGCTCAAAAGGAGAGGC
GTAAGCAAAAGTTGGCCAACCTAAAGGTAGTGGTTACATCTGCCACGATG
GATATCGATCACTTCGGAAATTACTTTAATTGCAAGGGCATGTACCTGGA
GGGACGGACGTATCCGGTCCGTGTGATGCACACCAAGGAGGAGCACGAAG
ATTACATCCACACCGTGCTGGTTACCCTCTTTCACATACACCGCACCACT
CCGAAAAACCACGACGTGTTGATATTCCTAACCGGGCAAGAGGAAATCGA
GTCATTGGCCCAACAAATACGCCAGCTTGCCAAGATTGACACGACTGGAA
CAACAGATCTCCGCGTATTCACGTTGTATGCTCAGCTATCGCAGGGCAAG
CAATTGGAGTGTTTTGTGCCGACACCGGCCAACGTACGCAAAGTAATCTT
GGCCACAAATATAGCAGAAACGTCGATCACCATACCGGGCATCCGTTGTG
TGATTGACTGTGGCTTTGTGAAGGAGAAATCGTTCAATACCGTCGACGGA
CTGGATGTCTTAAAGTCAGTTCGAATATCTAAGGCGCAAGCCTGGCAGAG
AGCTGGACGAGCAGGTCGCGATGCGGATGGAACCTGCTACAGGGCGTACA
CAAAAGCTGAAATGGACTCCTTTGCAGATGCAACTCAGCCAGAAATCCTG
AGAACAAATCCAACGTCAATGGTGCTGCAGCTCCTCGCCCTGGACATTGA
TTGCAACAATTTCGACTTCCTAGACCCGCCACTTGAAGATGGACTGCGCA
GTGCGTATAAGAGCCTCGATGCCCTGGGGGCTATTAAGACTGGAGATGAC
TCATACATTACACCGCTGGGTCGGCAAATGGTGCAGTATCCCTTGGATCC
CAAGTACTCAAAGCTACTGCTTACTGCTTCATCGTTCGGCTGCATGGAGG
AGATCCTGAGCCTTGTTTCCGTTCTCTCAAGCGATCACGTCTTCGTCTCG
AATAGCGAAAAAAACGAAATGGCTGCACTAGCTCACGCCAAGTTTCAGTC
CAAGCATGGTGATCATTTGACGCTGCTGAATGTGTTCAATGGGTTTTTGA
AAAGCGAAAAGCCAAAGATGTGGTGTCACGACAACTATTTAAATTTGCGT
AGTTTAACCTATGCACGAAATGTTCGCCGACAATTGAGGGAAATAAGCGA
GCACTTGCATTTGGCTCTAAATAGCTCGGATGACATTGAAATGTTGAAGA
AATGCATTTTAAATGGATTCTTTGAAAATATTGCCGTTCTGCAACGCGAT
GGCTTCTACATAACCGCTTCCGGCAACATCAGGTCCAAAATCCATCCGTC
GAGCGTTCTGCACGGAAAGTACAAGCCGAGCTACATACTCTTCACCGAAA
TTGTGCAGACGGAGCAAACGTTTCTACGCCAAGTCACGGAAATATCCATC
GAATGGATCAAGGAGGTTGTGCCGTTTGTTAAAAACATACCAACAAGAGC
AAGCTTTCTAGACCAT
BO18237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4901-RA | 2085 | CG4901-PA | 1..2082 | 17..2098 | 10410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4901-RA | 2246 | CG4901-RA | 138..2219 | 17..2098 | 10410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10211422..10212263 | 17..858 | 4210 | 100 | Plus |
2L | 23513712 | 2L | 10212466..10213250 | 933..1717 | 3925 | 100 | Plus |
2L | 23513712 | 2L | 10213312..10213694 | 1716..2098 | 1915 | 100 | Plus |
2L | 23513712 | 2L | 10212327..10212402 | 859..934 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:54:01 has no hits.
BO18237.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:46 Download gff for
BO18237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-RA | 1..2085 | 17..2101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:15 Download gff for
BO18237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-RA | 125..2210 | 17..2102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:25 Download gff for
BO18237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-RA | 138..2219 | 17..2100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:46 Download gff for
BO18237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-RA | 125..2210 | 17..2102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:23 Download gff for
BO18237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4901-RA | 138..2219 | 17..2100 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:23 Download gff for
BO18237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10211422..10212263 | 17..858 | 100 | -> | Plus |
2L | 10212327..10212402 | 859..934 | 100 | -> | Plus |
2L | 10212468..10213250 | 935..1717 | 100 | -> | Plus |
2L | 10213314..10213694 | 1718..2100 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:25 Download gff for
BO18237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10211422..10212263 | 17..858 | 100 | -> | Plus |
arm_2L | 10212327..10212402 | 859..934 | 100 | -> | Plus |
arm_2L | 10212468..10213250 | 935..1717 | 100 | -> | Plus |
arm_2L | 10213314..10213694 | 1718..2100 | 99 | | Plus |
BO18237.pep Sequence
Translation from 16 to 2116
> BO18237.pep
MDSKYFATSRNDAVGPSPVKFSFKRKYDAMANSPILEKKPHVAQIKQTIA
PILLTSKRTSIEQQQKSLPVFNCRHRILKELEANDTVLIMSETGSGKTTQ
IPQFLLLAGYAKNGMIGITQPRRVAAITVARRVAQELNGTIGDTVGYTVR
FEDVTSRATKIRFLTDGVLLRESIKDRLLLKYSVIILDEAHERTVNADLL
FGIVKDAQKERRKQKLANLKVVVTSATMDIDHFGNYFNCKGMYLEGRTYP
VRVMHTKEEHEDYIHTVLVTLFHIHRTTPKNHDVLIFLTGQEEIESLAQQ
IRQLAKIDTTGTTDLRVFTLYAQLSQGKQLECFVPTPANVRKVILATNIA
ETSITIPGIRCVIDCGFVKEKSFNTVDGLDVLKSVRISKAQAWQRAGRAG
RDADGTCYRAYTKAEMDSFADATQPEILRTNPTSMVLQLLALDIDCNNFD
FLDPPLEDGLRSAYKSLDALGAIKTGDDSYITPLGRQMVQYPLDPKYSKL
LLTASSFGCMEEILSLVSVLSSDHVFVSNSEKNEMAALAHAKFQSKHGDH
LTLLNVFNGFLKSEKPKMWCHDNYLNLRSLTYARNVRRQLREISEHLHLA
LNSSDDIEMLKKCILNGFFENIAVLQRDGFYITASGNIRSKIHPSSVLHG
KYKPSYILFTEIVQTEQTFLRQVTEISIEWIKEVVPFVKNIPTRASFLDH
BO18237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4901-PA | 694 | CG4901-PA | 1..694 | 1..694 | 3548 | 100 | Plus |
pea-PA | 1242 | CG8241-PA | 578..1211 | 60..696 | 1219 | 41.8 | Plus |
l(2)37Cb-PA | 894 | CG10689-PA | 241..867 | 57..686 | 1201 | 41.8 | Plus |
CG11107-PB | 729 | CG11107-PB | 64..696 | 60..686 | 1176 | 40.4 | Plus |
CG11107-PA | 729 | CG11107-PA | 64..696 | 60..686 | 1176 | 40.4 | Plus |