Clone Sequence Records
BO18241.5prime Sequence
745 bp (692 high quality bases) assembled on 2006-10-13
> BO18241.5prime
GAAGTTATCAGTCGACATGCAGGAACTCGATATATCGATACCATCTACGG
ATTTTGCATCGCAGTTATTATTATTATTTTTTTACAACAAAATGCAGAGC
CAGCGGTTTCTATTCGTGGCCATTTTGGCCTGTTTTCTGGTGACTATCAA
ATCCACGCCCCTCAGCGACATATCGTATTCGGATGAATCGACTTCGGTGA
ATGAGAAGACACAGAAACGTCCAGACGATGACAGTGAATTCGATGGTTTC
CCCTTTCGGGAAGATGATGATTCTCTGCAAGACTCGTCGAGGGAGATGTC
TGTGCAGGATCACAACTGGGATGTGCTGATTTTCACGCAACAATGGCCGG
TGACCACTTGCTATCATTGGCGCGAGGAGAATCCCGACCAGGAGTGCAGT
CTGCCCCAGAAGAAGGAGTTCTGGACCATTCACGGCATCTGGCCAACGAA
ACTGCACCAAATGGGACCGAATTTCTGCAATAACTCGGCCAACTTTGATC
CAAGCAAACTGAATCCCATTGAGGATCGACTGGAGACCTTTTGGCCGGAT
CTCAAAGGCATGGACTCCACGGAGTGGCTTTGGAAACACGAGTGGCAGAA
GCACGGAACATGCGCCATGCTGGTGGAGGAACTGGACAACGAACTCAAGT
ACTTCGAGCAGGGGCTCACTTGGCGTGAGGAGTACATCATGTCGCGCATT
CTAAACGCCTCGGACATCCATCCCCGATTCCACAATACGGGGGCG
BO18241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8194-PA | 978 | RNaseX25-RA | 1..649 | 92..740 | 3145 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RNaseX25-RA | 1663 | CG8194-RA | 2..735 | 12..745 | 3565 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7970939..7971521 | 163..745 | 2810 | 98.8 | Plus |
3L | 28110227 | 3L | 7970589..7970742 | 12..165 | 740 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:18:26 has no hits.
BO18241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:19 Download gff for
BO18241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8194-PA | 1..654 | 92..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:49 Download gff for
BO18241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RNaseX25-RA | 2..735 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:53 Download gff for
BO18241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RNaseX25-RA | 2..735 | 12..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:53 Download gff for
BO18241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7970580..7970742 | 1..165 | 95 | -> | Plus |
3L | 7970942..7971521 | 166..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:49 Download gff for
BO18241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7963680..7963842 | 1..165 | 95 | -> | Plus |
arm_3L | 7964042..7964621 | 166..745 | 99 | | Plus |
BO18241.complete Sequence
1083 bp assembled on 2008-08-14
> BO18241.complete
GAAGTTATCAGTCGACATGCAGGAACTCGATATATCGATACCATCTACGG
ATTTTGCATCGCAGTTATTATTATTATTTTTTTACAACAAAATGCAGAGC
CAGCGGTTTCTATTCGTGGCCATTTTGGCCTGTTTTCTGGTGACTATCAA
ATCCACGCCCCTCAGCGACATATCGTATTCGGATGAATCGACTTCGGTGA
ATGAGAAGACACAGAAACGTCCAGACGATGACAGTGAATTCGATGGTTTC
CCCTTTCGGGAAGATGATGATTCTCTGCAAGACTCGTCGAGGGAGATGTC
TGTGCAGGATCACAACTGGGATGTGCTGATTTTCACGCAACAATGGCCGG
TGACCACTTGCTATCATTGGCGCGAGGAGAATCCCGACCAGGAGTGCAGT
CTGCCCCAGAAGAAGGAGTTCTGGACCATTCACGGCATCTGGCCAACGAA
ACTGCACCAAATGGGACCGAATTTCTGCAATAACTCGGCCAACTTTGATC
CAAGCAAACTGAATCCCATTGAGGATCGACTGGAGACCTTTTGGCCGGAT
CTCAAAGGCATGGACTCCACGGAGTGGCTTTGGAAACACGAGTGGCAGAA
GCACGGAACATGCGCCATGCTGGTGGAGGAACTGGACAACGAACTCAAGT
ACTTCGAGCAGGGGCTCACTTGGCGTGAGGAGTACATCATGTCGCGCATT
CTAGACGCCTCGGACATCCATCCCGATTCCAACAATACGGTGGCGGCCAT
CAATAATGCGATAGTCAAGGCACTAGGGAAGAATCCGTCCATCCACTGCC
TGTACGATGGCAAACACGGCATCAGCTATCTATCGGAGATTCGCATTTGC
TTTAGCAAATCCCTGGAGCTCATCGACTGCGATGGTATCAAGCAGGGCGA
TGCTGTGCCCGTTGGTGTTCCTGGTGGCACTATCATTACTAATTGCCACA
TCGGTAGCCTCGTGCACTATCCCAGCCTGGTGCCACCGCTACAAAGGAAA
AGCCATTGGAAGTTACCGCTCGTAAACGTCTACAAGTTGCTGCAATTCCT
CATGTGGTTCACCTTGCAAGCTTTCTAGACCAT
BO18241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RNaseX25-RA | 978 | CG8194-PA | 1..975 | 92..1066 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RNaseX25-RA | 1663 | CG8194-RA | 2..1056 | 12..1066 | 5245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7970939..7971842 | 163..1066 | 4520 | 100 | Plus |
3L | 28110227 | 3L | 7970589..7970742 | 12..165 | 740 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:56:17 has no hits.
BO18241.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:05 Download gff for
BO18241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RNaseX25-RA | 1..1054 | 16..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:54 Download gff for
BO18241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RNaseX25-RA | 7..1056 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:04 Download gff for
BO18241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RNaseX25-RA | 2..1051 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:15 Download gff for
BO18241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RNaseX25-RA | 7..1056 | 17..1067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:15 Download gff for
BO18241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7970594..7970742 | 17..165 | 98 | -> | Plus |
3L | 7970942..7971842 | 166..1067 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:54 Download gff for
BO18241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7963694..7963842 | 17..165 | 98 | -> | Plus |
arm_3L | 7964042..7964942 | 166..1067 | 99 | | Plus |
BO18241.pep Sequence
Translation from 16 to 1077
> BO18241.pep
MQELDISIPSTDFASQLLLLFFYNKMQSQRFLFVAILACFLVTIKSTPLS
DISYSDESTSVNEKTQKRPDDDSEFDGFPFREDDDSLQDSSREMSVQDHN
WDVLIFTQQWPVTTCYHWREENPDQECSLPQKKEFWTIHGIWPTKLHQMG
PNFCNNSANFDPSKLNPIEDRLETFWPDLKGMDSTEWLWKHEWQKHGTCA
MLVEELDNELKYFEQGLTWREEYIMSRILDASDIHPDSNNTVAAINNAIV
KALGKNPSIHCLYDGKHGISYLSEIRICFSKSLELIDCDGIKQGDAVPVG
VPGGTIITNCHIGSLVHYPSLVPPLQRKSHWKLPLVNVYKLLQFLMWFTL
QAF*
BO18241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RNaseX25-PA | 325 | CG8194-PA | 1..325 | 26..350 | 1789 | 100 | Plus |