Clone BO18241 Report

Search the DGRC for BO18241

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptRNaseX25-RA
Protein status:BO18241.pep: Imported from assembly
Sequenced Size:1083

Clone Sequence Records

BO18241.5prime Sequence

745 bp (692 high quality bases) assembled on 2006-10-13

> BO18241.5prime
GAAGTTATCAGTCGACATGCAGGAACTCGATATATCGATACCATCTACGG
ATTTTGCATCGCAGTTATTATTATTATTTTTTTACAACAAAATGCAGAGC
CAGCGGTTTCTATTCGTGGCCATTTTGGCCTGTTTTCTGGTGACTATCAA
ATCCACGCCCCTCAGCGACATATCGTATTCGGATGAATCGACTTCGGTGA
ATGAGAAGACACAGAAACGTCCAGACGATGACAGTGAATTCGATGGTTTC
CCCTTTCGGGAAGATGATGATTCTCTGCAAGACTCGTCGAGGGAGATGTC
TGTGCAGGATCACAACTGGGATGTGCTGATTTTCACGCAACAATGGCCGG
TGACCACTTGCTATCATTGGCGCGAGGAGAATCCCGACCAGGAGTGCAGT
CTGCCCCAGAAGAAGGAGTTCTGGACCATTCACGGCATCTGGCCAACGAA
ACTGCACCAAATGGGACCGAATTTCTGCAATAACTCGGCCAACTTTGATC
CAAGCAAACTGAATCCCATTGAGGATCGACTGGAGACCTTTTGGCCGGAT
CTCAAAGGCATGGACTCCACGGAGTGGCTTTGGAAACACGAGTGGCAGAA
GCACGGAACATGCGCCATGCTGGTGGAGGAACTGGACAACGAACTCAAGT
ACTTCGAGCAGGGGCTCACTTGGCGTGAGGAGTACATCATGTCGCGCATT
CTAAACGCCTCGGACATCCATCCCCGATTCCACAATACGGGGGCG

BO18241.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8194-PA 978 RNaseX25-RA 1..649 92..740 3145 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
RNaseX25-RA 1663 CG8194-RA 2..735 12..745 3565 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7970939..7971521 163..745 2810 98.8 Plus
3L 28110227 3L 7970589..7970742 12..165 740 98.7 Plus
Blast to na_te.dros performed on 2015-02-10 22:18:26 has no hits.

BO18241.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:19 Download gff for BO18241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8194-PA 1..654 92..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:49 Download gff for BO18241.5prime
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 2..735 12..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:53 Download gff for BO18241.5prime
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 2..735 12..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:53 Download gff for BO18241.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7970580..7970742 1..165 95 -> Plus
3L 7970942..7971521 166..745 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:49 Download gff for BO18241.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7963680..7963842 1..165 95 -> Plus
arm_3L 7964042..7964621 166..745 99   Plus

BO18241.complete Sequence

1083 bp assembled on 2008-08-14

> BO18241.complete
GAAGTTATCAGTCGACATGCAGGAACTCGATATATCGATACCATCTACGG
ATTTTGCATCGCAGTTATTATTATTATTTTTTTACAACAAAATGCAGAGC
CAGCGGTTTCTATTCGTGGCCATTTTGGCCTGTTTTCTGGTGACTATCAA
ATCCACGCCCCTCAGCGACATATCGTATTCGGATGAATCGACTTCGGTGA
ATGAGAAGACACAGAAACGTCCAGACGATGACAGTGAATTCGATGGTTTC
CCCTTTCGGGAAGATGATGATTCTCTGCAAGACTCGTCGAGGGAGATGTC
TGTGCAGGATCACAACTGGGATGTGCTGATTTTCACGCAACAATGGCCGG
TGACCACTTGCTATCATTGGCGCGAGGAGAATCCCGACCAGGAGTGCAGT
CTGCCCCAGAAGAAGGAGTTCTGGACCATTCACGGCATCTGGCCAACGAA
ACTGCACCAAATGGGACCGAATTTCTGCAATAACTCGGCCAACTTTGATC
CAAGCAAACTGAATCCCATTGAGGATCGACTGGAGACCTTTTGGCCGGAT
CTCAAAGGCATGGACTCCACGGAGTGGCTTTGGAAACACGAGTGGCAGAA
GCACGGAACATGCGCCATGCTGGTGGAGGAACTGGACAACGAACTCAAGT
ACTTCGAGCAGGGGCTCACTTGGCGTGAGGAGTACATCATGTCGCGCATT
CTAGACGCCTCGGACATCCATCCCGATTCCAACAATACGGTGGCGGCCAT
CAATAATGCGATAGTCAAGGCACTAGGGAAGAATCCGTCCATCCACTGCC
TGTACGATGGCAAACACGGCATCAGCTATCTATCGGAGATTCGCATTTGC
TTTAGCAAATCCCTGGAGCTCATCGACTGCGATGGTATCAAGCAGGGCGA
TGCTGTGCCCGTTGGTGTTCCTGGTGGCACTATCATTACTAATTGCCACA
TCGGTAGCCTCGTGCACTATCCCAGCCTGGTGCCACCGCTACAAAGGAAA
AGCCATTGGAAGTTACCGCTCGTAAACGTCTACAAGTTGCTGCAATTCCT
CATGTGGTTCACCTTGCAAGCTTTCTAGACCAT

BO18241.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
RNaseX25-RA 978 CG8194-PA 1..975 92..1066 4875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
RNaseX25-RA 1663 CG8194-RA 2..1056 12..1066 5245 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7970939..7971842 163..1066 4520 100 Plus
3L 28110227 3L 7970589..7970742 12..165 740 98.7 Plus
Blast to na_te.dros performed on 2014-11-27 23:56:17 has no hits.

BO18241.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:05 Download gff for BO18241.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 1..1054 16..1069 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:54 Download gff for BO18241.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 7..1056 17..1067 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:04 Download gff for BO18241.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 2..1051 17..1067 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:15 Download gff for BO18241.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 7..1056 17..1067 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:15 Download gff for BO18241.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7970594..7970742 17..165 98 -> Plus
3L 7970942..7971842 166..1067 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:54 Download gff for BO18241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7963694..7963842 17..165 98 -> Plus
arm_3L 7964042..7964942 166..1067 99   Plus

BO18241.pep Sequence

Translation from 16 to 1077

> BO18241.pep
MQELDISIPSTDFASQLLLLFFYNKMQSQRFLFVAILACFLVTIKSTPLS
DISYSDESTSVNEKTQKRPDDDSEFDGFPFREDDDSLQDSSREMSVQDHN
WDVLIFTQQWPVTTCYHWREENPDQECSLPQKKEFWTIHGIWPTKLHQMG
PNFCNNSANFDPSKLNPIEDRLETFWPDLKGMDSTEWLWKHEWQKHGTCA
MLVEELDNELKYFEQGLTWREEYIMSRILDASDIHPDSNNTVAAINNAIV
KALGKNPSIHCLYDGKHGISYLSEIRICFSKSLELIDCDGIKQGDAVPVG
VPGGTIITNCHIGSLVHYPSLVPPLQRKSHWKLPLVNVYKLLQFLMWFTL
QAF*

BO18241.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
RNaseX25-PA 325 CG8194-PA 1..325 26..350 1789 100 Plus