Clone Sequence Records
BO18243.3prime Sequence
647 bp (647 high quality bases) assembled on 2006-10-13
> BO18243.3prime
ATGGTCTAGAAAGCTTGCGTCGGTGGCATCGGCCTTGGCCACGGAGAAGG
CCTCCGAAACGGGCAGGGTGCCGCTGTTGGCGATGACCACATCCTTGACG
GGACGGTCGCGGGCATCAGTGGCCGAGTTCTCGATCTGGCGCACCACATT
CATGCCCGACAGGATCTTGCCGAAGACGACGTGGCGTCCATCCAGCCAGC
TGGTCTGCTTGGTGGTGATGAAGAACTGCGATCCGTTGGTGTCCTTGCCA
GCGTTGGCCATGCTCAGCCAGCCGGCGCCATAGTGCTTCAGCTTGAAGTT
CTCATCCTCGAAGCGCTCGCCGTAGATGGAGCGACCGCCGGTGCCGTCGC
CCTTGGTGAAGTCACCGCCCTGGATCATGAAGTCCTTGATGATGCGGTGG
AACTTGCTGCCCTTGTAGCCCTCGCCCTGCGGCTTCAGCGCCAGCTCCTT
GAAGTTCTCCACCGTCTTGGGCACCGTCTTGCCGAACAGACCGATCTCGA
TGCGACCAGCGGGCTCGCCGCCAATGGTGATGTCAAAGAAAACCTTCTCG
GTCACTTTGGGACCCTTGCTATCGTCGGCAACAACGACGCCGGCCACCAG
GGCTACCACGAAAACGGATAAGAACAGCTTCATGTCGACTGATAACT
BO18243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2852-PA | 618 | CG2852-RA | 1..615 | 633..19 | 3075 | 100 | Minus |
| CG2852-PB | 363 | CG2852-RB | 1..360 | 378..19 | 1800 | 100 | Minus |
| CG13892-PA | 531 | Cypl-RA | 183..221 | 403..365 | 145 | 94.8 | Minus |
| CG17266-PA | 552 | CG17266-RA | 223..254 | 390..359 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2852-RD | 1177 | CG2852-RD | 74..688 | 633..19 | 3075 | 100 | Minus |
| CG2852-RA | 882 | CG2852-RA | 74..688 | 633..19 | 3075 | 100 | Minus |
| Cyp1-RA | 1227 | CG9916-RA | 365..561 | 417..221 | 280 | 76.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22645135..22645535 | 19..419 | 2005 | 100 | Plus |
| 2R | 25286936 | 2R | 22645921..22646047 | 419..545 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 22646180..22646271 | 542..633 | 460 | 100 | Plus |
| X | 23542271 | X | 16318339..16318535 | 221..417 | 280 | 76.1 | Plus |
| 2R | 25286936 | 2R | 6675226..6675432 | 214..420 | 225 | 73.9 | Plus |
| 3R | 32079331 | 3R | 28340642..28340743 | 402..301 | 180 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:08:37 has no hits.
BO18243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:21 Download gff for
BO18243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-PA | 1..618 | 15..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:18 Download gff for
BO18243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..693 | 14..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:39 Download gff for
BO18243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..693 | 14..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:39 Download gff for
BO18243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22645130..22645534 | 14..418 | 99 | <- | Plus |
| 2R | 22645921..22646045 | 419..543 | 100 | <- | Plus |
| 2R | 22646182..22646271 | 544..633 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:18 Download gff for
BO18243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18532635..18533039 | 14..418 | 99 | <- | Plus |
| arm_2R | 18533426..18533550 | 419..543 | 100 | <- | Plus |
| arm_2R | 18533687..18533776 | 544..633 | 100 | | Plus |
BO18243.5prime Sequence
647 bp (647 high quality bases) assembled on 2006-10-13
> BO18243.5prime
GAAGTTATCAGTCGACATGAAGCTGTTCTTATCCGTTTTCGTGGTAGCCC
TGGTGGCCGGCGTCGTTGTTGCCGACGATAGCAAGGGTCCCAAAGTGACC
GAGAAGGTTTTCTTTGACATCACCATTGGCGGCGAGCCCGCTGGTCGCAT
CGAGATCGGTCTGTTCGGCAAGACGGTGCCCAAGACGGTGGAGAACTTCA
AGGAGCTGGCGCTGAAGCCGCAGGGCGAGGGCTACAAGGGCAGCAAGTTC
CACCGCATCATCAAGGACTTCATGATCCAGGGCGGTGACTTCACCAAGGG
CGACGGCACCGGCGGTCGCTCCATCTACGGCGAGCGCTTCGAGGATGAGA
ACTTCAAGCTGAAGCACTATGGCGCCGGCTGGCTGAGCATGGCCAACGCT
GGCAAGGACACCAACGGATCGCAGTTCTTCATCACCACCAAGCAGACCAG
CTGGCTGGATGGACGCCACGTCGTCTTCGGCAAGATCCTGTCGGGCATGA
ATGTGGTGCGCCAGATCGAGAACTCGGCCACTGATGCCCGCGACCGTCCC
GTCAAGGATGTGGTCATCGCCAACAGCGGCACCCTGCCCGTTTCGGAGGC
CTTCTCCGTGGCCAAGGCCGATGCCACCGACGCAAGCTTTCTAGACC
BO18243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2852-PA | 618 | CG2852-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
| CG2852-PB | 363 | CG2852-RB | 1..360 | 272..631 | 1800 | 100 | Plus |
| CG13892-PA | 531 | Cypl-RA | 183..221 | 247..285 | 145 | 94.8 | Plus |
| CG17266-PA | 552 | CG17266-RA | 223..254 | 260..291 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2852-RD | 1177 | CG2852-RD | 74..688 | 17..631 | 3075 | 100 | Plus |
| CG2852-RA | 882 | CG2852-RA | 74..688 | 17..631 | 3075 | 100 | Plus |
| Cyp1-RA | 1227 | CG9916-RA | 365..561 | 233..429 | 280 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22645135..22645535 | 631..231 | 2005 | 100 | Minus |
| 2R | 25286936 | 2R | 22645921..22646047 | 231..105 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 22646180..22646271 | 108..17 | 460 | 100 | Minus |
| X | 23542271 | X | 16318339..16318535 | 429..233 | 280 | 76.1 | Minus |
| 2R | 25286936 | 2R | 6675226..6675432 | 436..230 | 225 | 73.9 | Minus |
| 3R | 32079331 | 3R | 28340642..28340743 | 248..349 | 180 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:47:32 has no hits.
BO18243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:22 Download gff for
BO18243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-PA | 1..618 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:19 Download gff for
BO18243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..693 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:11 Download gff for
BO18243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..693 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:11 Download gff for
BO18243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22645130..22645534 | 232..636 | 99 | <- | Minus |
| 2R | 22645921..22646045 | 107..231 | 100 | <- | Minus |
| 2R | 22646182..22646271 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:19 Download gff for
BO18243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18532635..18533039 | 232..636 | 99 | <- | Minus |
| arm_2R | 18533426..18533550 | 107..231 | 100 | <- | Minus |
| arm_2R | 18533687..18533776 | 17..106 | 100 | | Minus |
BO18243.complete Sequence
649 bp assembled on 2006-10-11
GenBank Submission: FJ634358
> BO18243.complete
GAAGTTATCAGTCGACATGAAGCTGTTCTTATCCGTTTTCGTGGTAGCCC
TGGTGGCCGGCGTCGTTGTTGCCGACGATAGCAAGGGTCCCAAAGTGACC
GAGAAGGTTTTCTTTGACATCACCATTGGCGGCGAGCCCGCTGGTCGCAT
CGAGATCGGTCTGTTCGGCAAGACGGTGCCCAAGACGGTGGAGAACTTCA
AGGAGCTGGCGCTGAAGCCGCAGGGCGAGGGCTACAAGGGCAGCAAGTTC
CACCGCATCATCAAGGACTTCATGATCCAGGGCGGTGACTTCACCAAGGG
CGACGGCACCGGCGGTCGCTCCATCTACGGCGAGCGCTTCGAGGATGAGA
ACTTCAAGCTGAAGCACTATGGCGCCGGCTGGCTGAGCATGGCCAACGCT
GGCAAGGACACCAACGGATCGCAGTTCTTCATCACCACCAAGCAGACCAG
CTGGCTGGATGGACGCCACGTCGTCTTCGGCAAGATCCTGTCGGGCATGA
ATGTGGTGCGCCAGATCGAGAACTCGGCCACTGATGCCCGCGACCGTCCC
GTCAAGGATGTGGTCATCGCCAACAGCGGCACCCTGCCCGTTTCGGAGGC
CTTCTCCGTGGCCAAGGCCGATGCCACCGACGCAAGCTTTCTAGACCAT
BO18243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2852-RD | 618 | CG2852-PD | 1..615 | 17..631 | 3075 | 100 | Plus |
| CG2852-RA | 618 | CG2852-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
| Cyp1-RA | 684 | CG9916-PA | 331..527 | 233..429 | 280 | 76.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2852-RD | 1177 | CG2852-RD | 74..688 | 17..631 | 3075 | 100 | Plus |
| CG2852-RA | 882 | CG2852-RA | 74..688 | 17..631 | 3075 | 100 | Plus |
| Cyp1-RA | 1227 | CG9916-RA | 365..561 | 233..429 | 280 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22645135..22645535 | 631..231 | 2005 | 100 | Minus |
| 2R | 25286936 | 2R | 22645921..22646047 | 231..105 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 22646180..22646271 | 108..17 | 460 | 100 | Minus |
| X | 23542271 | X | 16318339..16318535 | 429..233 | 280 | 76.1 | Minus |
| 2R | 25286936 | 2R | 6675226..6675432 | 436..230 | 225 | 73.9 | Minus |
| 3R | 32079331 | 3R | 28340642..28340743 | 248..349 | 180 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:33:58 has no hits.
BO18243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:17 Download gff for
BO18243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 1..618 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:24 Download gff for
BO18243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 76..695 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:07 Download gff for
BO18243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..688 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:17 Download gff for
BO18243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 76..695 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:13 Download gff for
BO18243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..688 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:13 Download gff for
BO18243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22645133..22645534 | 232..633 | 99 | <- | Minus |
| 2R | 22645921..22646045 | 107..231 | 100 | <- | Minus |
| 2R | 22646182..22646271 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:07 Download gff for
BO18243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18532638..18533039 | 232..633 | 99 | <- | Minus |
| arm_2R | 18533426..18533550 | 107..231 | 100 | <- | Minus |
| arm_2R | 18533687..18533776 | 17..106 | 100 | | Minus |
BO18243.pep Sequence
Translation from 16 to 649
> BO18243.pep
MKLFLSVFVVALVAGVVVADDSKGPKVTEKVFFDITIGGEPAGRIEIGLF
GKTVPKTVENFKELALKPQGEGYKGSKFHRIIKDFMIQGGDFTKGDGTGG
RSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTKQTSWLDGR
HVVFGKILSGMNVVRQIENSATDARDRPVKDVVIANSGTLPVSEAFSVAK
ADATDASFLDH
BO18243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2852-PD | 205 | CG2852-PD | 1..205 | 1..205 | 1055 | 100 | Plus |
| CG2852-PA | 205 | CG2852-PA | 1..205 | 1..205 | 1055 | 100 | Plus |
| Cyp1-PA | 227 | CG9916-PA | 53..227 | 17..190 | 490 | 54 | Plus |
| CG7768-PB | 164 | CG7768-PB | 5..164 | 30..190 | 480 | 57.1 | Plus |
| CG7768-PA | 164 | CG7768-PA | 5..164 | 30..190 | 480 | 57.1 | Plus |
