Clone Sequence Records
BO18244.3prime Sequence
792 bp (730 high quality bases) assembled on 2006-10-13
> BO18244.3prime
ATGGTCTAGAAAGCTTGCTTGCTCTTCTGTCCACTCGGTGGATTTCTTGG
CCAACAACATGGCAGCCTCCTCGGTTTTTGCCCCGCCAATAAATCCTGTG
TGATGGATGAATTCGAGATCTTTGATGCTCGCCTTATCGCATAGTTCATC
GTCCATCAGTCCGCGCCAAGGAGTGGGCAGAAATTTGCGGCCCAGATAGC
TGCCAGGCGTCACTGGAACTCCGGCCACTCGCCAACTATTGCCGCTGTTG
AAGACGACCAGCTTGGGCACACCCTCCACCTTGTACTCCTTTTCAAGATC
GAACAGATGAGACTTCCAGGGGCAGAAATTCTTCAACACAAGAATCTCGC
CGGTGGGATGGACGTTCTTGGCATTTTTAAGAGCCTCTCGTACGTGATCC
CGGGCTGGAATCCAGGAACATGATACCTCCACAACGTTGTCCACAAACTC
ACGACCTGCAGTATCCATCGCCTGTCTGAATCGGTCTTCGATGTCTACGC
CAGTTTCCTGCCAGGACGGATTCAGTTTGGCAATGCGGGCAGATAGATGA
GTGGAGATTTTGTATATAGGCTCAACGCCCTCGAACATGGGCACTCCATT
ATCAATTGCGTCCAGTTCGTTGATAAAAATTCCTATAGATCTGAATAAAG
GCCGTTTGCAGGTTTTCCGGTGAGAGTTTAATTCCCTTTTCGCGCTGCAG
GATGCTCTGTATAACACGCTCGCCATAGTGACAGTAGACCAGTCCAGCAC
TGCTTAGCCTGACAACGTTGTAATCCTCGCTTTACTCTGGGC
BO18244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PB | 1077 | CG11980-RB | 465..1074 | 628..19 | 3050 | 100 | Minus |
CG11980-PC | 1080 | CG11980-RC | 468..1077 | 628..19 | 3050 | 100 | Minus |
CG11980-PA | 1038 | CG11980-RA | 426..1035 | 628..19 | 3050 | 100 | Minus |
CG11980-PB | 1077 | CG11980-RB | 312..468 | 782..626 | 760 | 99.3 | Minus |
CG11980-PC | 1080 | CG11980-RC | 315..471 | 782..626 | 760 | 99.3 | Minus |
CG11980-PA | 1038 | CG11980-RA | 273..429 | 782..626 | 760 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RA | 1179 | CG11980-RA | 323..1095 | 792..19 | 3785 | 99.5 | Minus |
CG11980-RC | 1195 | CG11980-RC | 339..1111 | 792..19 | 3785 | 99.5 | Minus |
CG11980-RB | 1192 | CG11980-RB | 336..1108 | 792..19 | 3785 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005247 | 761..19 | 3665 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:44:14 has no hits.
BO18244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:22 Download gff for
BO18244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PA | 263..1038 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:20 Download gff for
BO18244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 336..1111 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:47 Download gff for
BO18244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 336..1111 | 15..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:47 Download gff for
BO18244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004418..9004451 | 759..792 | 91 | -> | Minus |
3R | 9004509..9005250 | 15..758 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:20 Download gff for
BO18244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4830140..4830173 | 759..792 | 91 | -> | Minus |
arm_3R | 4830231..4830972 | 15..758 | 99 | | Minus |
BO18244.5prime Sequence
757 bp (674 high quality bases) assembled on 2006-10-13
> BO18244.5prime
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCCAGGAAAAC
TATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATC
GGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTAT
GCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGG
ACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGC
GTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAA
GGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTG
TCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTT
ATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAA
CCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGG
ACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATAC
AAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTG
GCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATA
CTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGG
ATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGT
CCCTTCC
BO18244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PC | 1080 | CG11980-RC | 1..736 | 17..752 | 3680 | 100 | Plus |
CG11980-PB | 1077 | CG11980-RB | 26..733 | 45..752 | 3540 | 100 | Plus |
CG11980-PA | 1038 | CG11980-RA | 1..694 | 59..752 | 3470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RC | 1195 | CG11980-RC | 35..770 | 17..752 | 3680 | 100 | Plus |
CG11980-RB | 1192 | CG11980-RB | 35..767 | 17..752 | 3625 | 99.6 | Plus |
CG11980-RA | 1179 | CG11980-RA | 44..754 | 42..752 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9004906 | 352..752 | 2005 | 100 | Plus |
3R | 32079331 | 3R | 9004139..9004452 | 42..355 | 1570 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:09:45 has no hits.
BO18244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:22 Download gff for
BO18244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PC | 1..740 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:10 Download gff for
BO18244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 29..774 | 8..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:42 Download gff for
BO18244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 29..774 | 8..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:42 Download gff for
BO18244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004139..9004451 | 42..354 | 100 | -> | Plus |
3R | 9004509..9004910 | 355..757 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:10 Download gff for
BO18244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4829861..4830173 | 42..354 | 100 | -> | Plus |
arm_3R | 4830231..4830632 | 355..757 | 99 | | Plus |
BO18244.complete Sequence
1111 bp assembled on 2006-10-11
GenBank Submission: FJ634359
> BO18244.complete
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCCAGGAAAAC
TATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATC
GGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTAT
GCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGG
ACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGC
GTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAA
GGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTG
TCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTT
ATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAA
CCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGG
ACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATAC
AAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTG
GCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATA
CTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGG
ATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGT
CCATCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGT
CTCATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAG
CTGGTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGT
GACGCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGCGCG
GACTGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTCGAA
TTCATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGCTGC
CATGTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAAGCAAGCT
TTCTAGACCAT
BO18244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RC | 1080 | CG11980-PC | 1..1077 | 17..1093 | 5385 | 100 | Plus |
CG11980-RB | 1077 | CG11980-PB | 1..1074 | 17..1093 | 5305 | 99.7 | Plus |
CG11980-RA | 1038 | CG11980-PA | 1..1035 | 59..1093 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RC | 1195 | CG11980-RC | 35..1111 | 17..1093 | 5385 | 100 | Plus |
CG11980-RB | 1192 | CG11980-RB | 35..1108 | 17..1093 | 5305 | 99.7 | Plus |
CG11980-RA | 1179 | CG11980-RA | 44..1095 | 42..1093 | 5260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005247 | 352..1093 | 3710 | 100 | Plus |
3R | 32079331 | 3R | 9004139..9004452 | 42..355 | 1570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:03:14 has no hits.
BO18244.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:18 Download gff for
BO18244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 1..1080 | 17..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:26 Download gff for
BO18244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 16..1101 | 8..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:43 Download gff for
BO18244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 40..1111 | 22..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:18 Download gff for
BO18244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 16..1101 | 8..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:43 Download gff for
BO18244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 40..1111 | 22..1095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:43 Download gff for
BO18244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004056..9004075 | 22..41 | 100 | -> | Plus |
3R | 9004139..9004451 | 42..354 | 100 | -> | Plus |
3R | 9004509..9005247 | 355..1095 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:43 Download gff for
BO18244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4829778..4829797 | 22..41 | 100 | -> | Plus |
arm_3R | 4829861..4830173 | 42..354 | 100 | -> | Plus |
arm_3R | 4830231..4830969 | 355..1095 | 99 | | Plus |
BO18244.pep Sequence
Translation from 16 to 1111
> BO18244.pep
MFRLLPRFPGKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLD
EYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSS
VRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAF
IQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGV
DIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGE
ILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSY
LGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAK
KSTEWTEEQASFLDH
BO18244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PC | 359 | CG11980-PC | 1..359 | 1..359 | 1911 | 100 | Plus |
CG11980-PB | 358 | CG11980-PB | 1..358 | 1..359 | 1884 | 99.4 | Plus |
CG11980-PA | 345 | CG11980-PA | 1..345 | 15..359 | 1839 | 100 | Plus |