Clone BO18244 Report

Search the DGRC for BO18244

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG11980-RC
Protein status:BO18244.pep: validated full length
Sequenced Size:1111

Clone Sequence Records

BO18244.3prime Sequence

792 bp (730 high quality bases) assembled on 2006-10-13

> BO18244.3prime
ATGGTCTAGAAAGCTTGCTTGCTCTTCTGTCCACTCGGTGGATTTCTTGG
CCAACAACATGGCAGCCTCCTCGGTTTTTGCCCCGCCAATAAATCCTGTG
TGATGGATGAATTCGAGATCTTTGATGCTCGCCTTATCGCATAGTTCATC
GTCCATCAGTCCGCGCCAAGGAGTGGGCAGAAATTTGCGGCCCAGATAGC
TGCCAGGCGTCACTGGAACTCCGGCCACTCGCCAACTATTGCCGCTGTTG
AAGACGACCAGCTTGGGCACACCCTCCACCTTGTACTCCTTTTCAAGATC
GAACAGATGAGACTTCCAGGGGCAGAAATTCTTCAACACAAGAATCTCGC
CGGTGGGATGGACGTTCTTGGCATTTTTAAGAGCCTCTCGTACGTGATCC
CGGGCTGGAATCCAGGAACATGATACCTCCACAACGTTGTCCACAAACTC
ACGACCTGCAGTATCCATCGCCTGTCTGAATCGGTCTTCGATGTCTACGC
CAGTTTCCTGCCAGGACGGATTCAGTTTGGCAATGCGGGCAGATAGATGA
GTGGAGATTTTGTATATAGGCTCAACGCCCTCGAACATGGGCACTCCATT
ATCAATTGCGTCCAGTTCGTTGATAAAAATTCCTATAGATCTGAATAAAG
GCCGTTTGCAGGTTTTCCGGTGAGAGTTTAATTCCCTTTTCGCGCTGCAG
GATGCTCTGTATAACACGCTCGCCATAGTGACAGTAGACCAGTCCAGCAC
TGCTTAGCCTGACAACGTTGTAATCCTCGCTTTACTCTGGGC

BO18244.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 1077 CG11980-RB 465..1074 628..19 3050 100 Minus
CG11980-PC 1080 CG11980-RC 468..1077 628..19 3050 100 Minus
CG11980-PA 1038 CG11980-RA 426..1035 628..19 3050 100 Minus
CG11980-PB 1077 CG11980-RB 312..468 782..626 760 99.3 Minus
CG11980-PC 1080 CG11980-RC 315..471 782..626 760 99.3 Minus
CG11980-PA 1038 CG11980-RA 273..429 782..626 760 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RA 1179 CG11980-RA 323..1095 792..19 3785 99.5 Minus
CG11980-RC 1195 CG11980-RC 339..1111 792..19 3785 99.5 Minus
CG11980-RB 1192 CG11980-RB 336..1108 792..19 3785 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005247 761..19 3665 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 17:44:14 has no hits.

BO18244.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:22 Download gff for BO18244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PA 263..1038 15..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:20 Download gff for BO18244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 336..1111 15..792 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:47 Download gff for BO18244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 336..1111 15..792 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:47 Download gff for BO18244.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9004418..9004451 759..792 91 -> Minus
3R 9004509..9005250 15..758 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:20 Download gff for BO18244.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4830140..4830173 759..792 91 -> Minus
arm_3R 4830231..4830972 15..758 99   Minus

BO18244.5prime Sequence

757 bp (674 high quality bases) assembled on 2006-10-13

> BO18244.5prime
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCCAGGAAAAC
TATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATC
GGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTAT
GCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGG
ACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGC
GTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAA
GGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTG
TCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTT
ATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAA
CCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGG
ACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATAC
AAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTG
GCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATA
CTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGG
ATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGT
CCCTTCC

BO18244.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PC 1080 CG11980-RC 1..736 17..752 3680 100 Plus
CG11980-PB 1077 CG11980-RB 26..733 45..752 3540 100 Plus
CG11980-PA 1038 CG11980-RA 1..694 59..752 3470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RC 1195 CG11980-RC 35..770 17..752 3680 100 Plus
CG11980-RB 1192 CG11980-RB 35..767 17..752 3625 99.6 Plus
CG11980-RA 1179 CG11980-RA 44..754 42..752 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9004906 352..752 2005 100 Plus
3R 32079331 3R 9004139..9004452 42..355 1570 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:09:45 has no hits.

BO18244.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:22 Download gff for BO18244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PC 1..740 17..757 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:10 Download gff for BO18244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 29..774 8..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:42 Download gff for BO18244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 29..774 8..757 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:42 Download gff for BO18244.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9004139..9004451 42..354 100 -> Plus
3R 9004509..9004910 355..757 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:10 Download gff for BO18244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829861..4830173 42..354 100 -> Plus
arm_3R 4830231..4830632 355..757 99   Plus

BO18244.complete Sequence

1111 bp assembled on 2006-10-11

GenBank Submission: FJ634359

> BO18244.complete
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCCAGGAAAAC
TATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATC
GGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTAT
GCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGG
ACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGC
GTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAA
GGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTG
TCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTT
ATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAA
CCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGG
ACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATAC
AAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTG
GCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATA
CTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGG
ATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGT
CCATCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGT
CTCATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAG
CTGGTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGT
GACGCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGCGCG
GACTGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTCGAA
TTCATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGCTGC
CATGTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAAGCAAGCT
TTCTAGACCAT

BO18244.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RC 1080 CG11980-PC 1..1077 17..1093 5385 100 Plus
CG11980-RB 1077 CG11980-PB 1..1074 17..1093 5305 99.7 Plus
CG11980-RA 1038 CG11980-PA 1..1035 59..1093 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RC 1195 CG11980-RC 35..1111 17..1093 5385 100 Plus
CG11980-RB 1192 CG11980-RB 35..1108 17..1093 5305 99.7 Plus
CG11980-RA 1179 CG11980-RA 44..1095 42..1093 5260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005247 352..1093 3710 100 Plus
3R 32079331 3R 9004139..9004452 42..355 1570 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:03:14 has no hits.

BO18244.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:18 Download gff for BO18244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 1..1080 17..1097 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:26 Download gff for BO18244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 16..1101 8..1097 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:43 Download gff for BO18244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 40..1111 22..1095 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:18 Download gff for BO18244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 16..1101 8..1097 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:43 Download gff for BO18244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 40..1111 22..1095 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:43 Download gff for BO18244.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004056..9004075 22..41 100 -> Plus
3R 9004139..9004451 42..354 100 -> Plus
3R 9004509..9005247 355..1095 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:43 Download gff for BO18244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829778..4829797 22..41 100 -> Plus
arm_3R 4829861..4830173 42..354 100 -> Plus
arm_3R 4830231..4830969 355..1095 99   Plus

BO18244.pep Sequence

Translation from 16 to 1111

> BO18244.pep
MFRLLPRFPGKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLD
EYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSS
VRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAF
IQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGV
DIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGE
ILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSY
LGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAK
KSTEWTEEQASFLDH

BO18244.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PC 359 CG11980-PC 1..359 1..359 1911 100 Plus
CG11980-PB 358 CG11980-PB 1..358 1..359 1884 99.4 Plus
CG11980-PA 345 CG11980-PA 1..345 15..359 1839 100 Plus