Clone Sequence Records
BO18245.3prime Sequence
820 bp (710 high quality bases) assembled on 2006-10-13
> BO18245.3prime
ATGGTCTAGAAAGCTTGCGTCCTGCTCCTCCTCCTCCTCCTCGTCGAGAT
CTTCCAGCAGCGGCTGGTCGCCCGATGGACTGCCTGGCGATATCGCTGCT
CTCCCCGATGCAACTCCAGTTGCTGCTGCTCCTGCCGCTGGCAATCCTTC
GCCCTCGGCAGCTGTCTCATCGGTGGCCTTGCCGCGCCGGAAAAGCTGAT
TGAAGATCTTCTTAACAAAATTCTTCGGCGCCGATGTCTGACGACCGACA
ATGATCATCTTGGTGGCCACACTGTGTATGGGTCCAAAGGCCAGGGCAAC
CACTGTGCATGCGAGACAGATCACATTGTACGGCATGCTAAAGTCCGGCG
TGGGCAGTGAGACAATCAGCGCTTCCGTGTGCAAACTGAGAACATAACTC
GGACGTGTGGCATTGAACGAATGCTCAAAGAGATGCCCCTCCGGCGGCAG
AGCGGTATAGTTTCTGCCCATCGGCAGTTGGCTGGACACAATGGCCGAGC
CGATGTAATGGCCGTGATTCGCATCCGGCGGATACTCCAACCATTTGAGC
AGCAAATAATCCACATCGATGCTTATCAGCGCCGATGTCTGGCCGGGCAG
CATGAAGCCAATTTCCAAATGGGACGGCAGTTCCCTCTGCTTGCCGGGCG
TATAGTGGAGCAGCTTGAAGGTCAATCGCTGGCCTCCGTATTCGTTGACC
CGCTGCGGCTTGCGACGTATGGAAAGGGTGTGGAAATAGGCGTGCACATA
CCACGGTATCACCTCCTTGCGCATTATGGGCAGGGCGTCGTATTGCGAGT
TCGTCACCTCCGTAACGATC
BO18245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11190-PA | 1902 | CG11190-RA | 1151..1899 | 767..19 | 3720 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11190-RA | 2521 | CG11190-RA | 1392..2193 | 820..19 | 3935 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8404863..8405664 | 19..820 | 3935 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-12 11:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 8585..8720 | 191..57 | 118 | 60 | Minus |
BO18245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:23 Download gff for
BO18245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-PA | 1098..1902 | 18..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:06 Download gff for
BO18245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-RA | 1392..2193 | 19..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:53 Download gff for
BO18245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-RA | 1392..2193 | 19..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:53 Download gff for
BO18245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8404863..8405664 | 19..820 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:06 Download gff for
BO18245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8298896..8299697 | 19..820 | 99 | | Plus |
BO18245.5prime Sequence
814 bp (706 high quality bases) assembled on 2006-10-13
> BO18245.5prime
GAAGTTATCAGTCGACATGTATCCGGTGGCGTTTGTCTTGCTGCTGCTGG
TTGCACCTAATGCCGACGCGAATTTGGGACGCGATGACGAACGATTCCAC
GAGGAGCTAGTGGTTCGTCCATTGTCCGGCGACCATGTCAACACCTACTT
TCAGTTCACCACGCGCTGGCACTACGGCGAAAAGGATAATCTTTACCACA
CCCAATTGACGCCTCGAGTAATTGCGGAGCTGTTGCAGCAGTTTGCGGTA
AAGGAGCTGCACATTGGCCTAACCCAGGGACTGTGGCGCTACGAGACATG
GGGCTATCCCATTGTGGAGGCCACCAGCGGTGCCGAGATGTGGGCGTGGT
TCAGTGGCGCAAATTTGACCAACCGGGATGTGGATCGCCAGTGGAAGGAG
TTGGCCAACGTTTTCTCGGGCGTGTTGTGCGCCTCGTTGAATTTCGTCGA
CAATACGAATAGCATTGCACCGAGGCACTTGATTCGTCCACAATTTATGC
CAGCCAATGGCCAAAGATTCGTTCGCTATGCCACATTGCCGCGTGAGATC
GTGTGCACGGAGAATCTGACGCCGTGGAAGAAACTACTGCCATGCGGTAG
TGCCTCAGGCTTTGCCTCACTTCTCAACTCGGGACATGTACACAACACCA
AATACCATTCGCTGGGCCTGAAGGTGCGCGTGCTCTGCGAGGATCACGAT
GAGGACAATTGCATTGTGGAGCTGACGCAGACGGCCAACTTGGTCTACGA
TCTCCGTCTGTTCGAATTGAGCAACAATGATTTCTCGCTGCGCCGCCTGT
TCGGCATGGGACTG
BO18245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11190-PA | 1902 | CG11190-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11190-RA | 2521 | CG11190-RA | 294..1092 | 16..814 | 3995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8405964..8406586 | 814..192 | 3115 | 100 | Minus |
| X | 23542271 | X | 8406795..8406970 | 191..16 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:25:18 has no hits.
BO18245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:23 Download gff for
BO18245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:28:12 Download gff for
BO18245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-RA | 294..1092 | 16..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:05 Download gff for
BO18245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-RA | 294..1092 | 16..814 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:05 Download gff for
BO18245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8405964..8406586 | 192..814 | 100 | <- | Minus |
| X | 8406795..8406970 | 16..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:28:12 Download gff for
BO18245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8299997..8300619 | 192..814 | 100 | <- | Minus |
| arm_X | 8300828..8301003 | 16..191 | 100 | | Minus |
BO18245.complete Sequence
1933 bp assembled on 2006-12-18
GenBank Submission: FJ634360
> BO18245.complete
GAAGTTATCAGTCGACATGTATCCGGTGGCGTTTGTCTTGCTGCTGCTGG
TTGCACCTAATGCCGACGCGAATTTGGGACGCGATGACGAACGATTCCAC
GAGGAGCTAGTGGTTCGTCCATTGTCCGGCGACCATGTCAACACCTACTT
TCAGTTCACCACGCGCTGGCACTACGGCGAAAAGGATAATCTTTACCACA
CCCAATTGACGCCTCGAGTAATTGCGGAGCTGTTGCAGCAGTTTGCGGTA
AAGGAGCTGCACATTGGCCTAACCCAGGGACTGTGGCGCTACGAGACATG
GGGCTATCCCATTGTGGAGGCCACCAGCGGTGCCGAGATGTGGGCGTGGT
TCAGTGGCGCAAATTTGACCAACCGGGATGTGGATCGCCAGTGGAAGGAG
TTGGCCAACGTTTTCTCGGGCGTGTTGTGCGCCTCGTTGAATTTCGTCGA
CAATACGAATAGCATTGCACCGAGGCACTTGATTCGTCCACAATTTATGC
CAGCCAATGGCCAAAGATTCGTTCGCTATGCCACATTGCCGCGTGAGATC
GTGTGCACGGAGAATCTGACGCCGTGGAAGAAACTACTGCCATGCGGTAG
TGCCTCAGGCTTTGCCTCACTTCTCAACTCGGGACATGTACACAACACCA
AATACCATTCGCTGGGCCTGAAGGTGCGCGTGCTCTGCGAGGATCACGAT
GAGGACAATTGCATTGTGGAGCTGACGCAGACGGCCAACTTGGTCTACGA
TCTCCGTCTGTTCGAATTGAGCAACAATGATTTCTCGCTGCGCCGCCTGT
TCGGCATGGGACTGAATGGCTATTGTGAGCTGGCCGAGAGCTCCAAGATC
TATGTGCAGCGCAACGAGCTGGGCGAGCGCTATCAGCTGGTTCCAGAACC
CGTGCACGAAGTGAAGACCACTCGTGGTGGGCATAGTGTCGTCTATTCCG
TCTACGATATGCACGAGCAGTTCAAAGAGGCCGGCGAACGGCTGTTTAAT
GTCGCCTGGCTGGCGCCGAAGAGCGCAAATCGTCGTCGCAATTTGGCGAA
GCCATCACTGCCACCGGTGACGGTTCATCGTTATCTATTGGGACACGGCC
AGGAGCGTGGCAGGATCGTTACGGAGGTGACGAACTCGCACTACGACGCC
CTGCCCATAATGCTGCAGGAGGTGATACCGTGGTATGTGCACGCCTATTT
GCACACCCTTTCCATACGTCGCAAGCCGCAGCGGGTCAACGAATACGGAG
GCCAGCGATTGACCTTCAAGCTGCTCCACTATACGCCCGGCAAGCAGAGG
GAACTGCCGTCCCATTTGGAAATTGGCTTCATGCTGCCCGGCCAGACATC
GGCGCTGATAAGCATCGATGTGGATTATTTGCTGCTCAAATGGTTGGAGT
ATCCGCCGGATGCGAATCACGGCCATTACATCGGCTCGGCCATTGTGTCC
AGCCAACTGCCGATGGGCAGAAACTATACCGCTCTGCCGCCGGAGGGGCA
TCTCTTTGAGCATTCGTTCAATGCCACACGTCCGAGTTATGTTCTCAGTT
TGCACACGGAAGCGCTGATTGTCTCACTGCCCACGCCGGACTTTAGCATG
CCGTACAATGTGATCTGTCTCGCATGCACAGTGGTTGCCCTGGCCTTTGG
ACCCATACACAGTGTGGCCACCAAGATGATCATTGTCGGTCGTCAGACAT
CGGCGCCGAAGAATTTTGTTAAGAAGATCTTCAATCAGCTTTTCCGGCGC
GGCAAGGCCACCGATGAGACAGCTGCCGAGGGCGAAGGATTGCCAGCGGC
AGGAGCAGCAGCAACTGGAGTTGCATCGGGGAGAGCAGCGATATCGCCAG
GCAGTCCATCGGGCGACCAGCCGCTGCTGGAAGATCTCGACGAGGAGGAG
GAGGAGGAGCAGGACGCAAGCTTTCTAGACCAT
BO18245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11190-RA | 1902 | CG11190-PA | 1..1899 | 17..1915 | 9495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11190-RA | 2521 | CG11190-RA | 294..2193 | 16..1915 | 9500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8404863..8406586 | 1915..192 | 8620 | 100 | Minus |
| X | 23542271 | X | 8406795..8406970 | 191..16 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:57 has no hits.
BO18245.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:33 Download gff for
BO18245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-RA | 1..1902 | 17..1916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:00 Download gff for
BO18245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-RA | 317..2216 | 16..1915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:50 Download gff for
BO18245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-RA | 295..2193 | 17..1917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:33 Download gff for
BO18245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-RA | 317..2216 | 16..1915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:19 Download gff for
BO18245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11190-RA | 295..2193 | 17..1917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:19 Download gff for
BO18245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8404861..8406586 | 192..1917 | 99 | <- | Minus |
| X | 8406795..8406969 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:50 Download gff for
BO18245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8298894..8300619 | 192..1917 | 99 | <- | Minus |
| arm_X | 8300828..8301002 | 17..191 | 100 | | Minus |
BO18245.pep Sequence
Translation from 16 to 1933
> BO18245.pep
MYPVAFVLLLLVAPNADANLGRDDERFHEELVVRPLSGDHVNTYFQFTTR
WHYGEKDNLYHTQLTPRVIAELLQQFAVKELHIGLTQGLWRYETWGYPIV
EATSGAEMWAWFSGANLTNRDVDRQWKELANVFSGVLCASLNFVDNTNSI
APRHLIRPQFMPANGQRFVRYATLPREIVCTENLTPWKKLLPCGSASGFA
SLLNSGHVHNTKYHSLGLKVRVLCEDHDEDNCIVELTQTANLVYDLRLFE
LSNNDFSLRRLFGMGLNGYCELAESSKIYVQRNELGERYQLVPEPVHEVK
TTRGGHSVVYSVYDMHEQFKEAGERLFNVAWLAPKSANRRRNLAKPSLPP
VTVHRYLLGHGQERGRIVTEVTNSHYDALPIMLQEVIPWYVHAYLHTLSI
RRKPQRVNEYGGQRLTFKLLHYTPGKQRELPSHLEIGFMLPGQTSALISI
DVDYLLLKWLEYPPDANHGHYIGSAIVSSQLPMGRNYTALPPEGHLFEHS
FNATRPSYVLSLHTEALIVSLPTPDFSMPYNVICLACTVVALAFGPIHSV
ATKMIIVGRQTSAPKNFVKKIFNQLFRRGKATDETAAEGEGLPAAGAAAT
GVASGRAAISPGSPSGDQPLLEDLDEEEEEEQDASFLDH
BO18245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11190-PA | 633 | CG11190-PA | 1..633 | 1..633 | 3356 | 100 | Plus |
