Clone BO18247 Report

Search the DGRC for BO18247

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptGs1l-RA
Protein status:BO18247.pep: validated full length
Sequenced Size:727

Clone Sequence Records

BO18247.3prime Sequence

725 bp (648 high quality bases) assembled on 2006-10-13

> BO18247.3prime
ATGGTCTAGAAAGCTTGCATCCGTGAAGGCGGGCAGCCCGAACTGCTCCG
GCTTGAAGTCCGCCAACGAGGCCAGCACTTGTGTGGCGTGCGAGGTCTTT
TCCTGGGACAGTCGTGGGTCCGGCACCATCACCACCTGCATTCCGGCGCT
GTTGGCAGCCGTCACGCCGTTCGGCGAGTCCTCGAACACCAGGCAGTCGG
ACGGTTTGGGCGGCACACCGAATCTGCCGGCGGCCACTAGGAAAATGTCG
GGCGCAGGCTTGCCGTTGACCACCTCCTTGTCCGACGAACCGCACACCTT
GTGGTTAAACAGGGAGAACAGCTCCCGATGTTGGGCCGTCTTCAGCTCGA
CCATGTCGGCGCCGGAGCTGGTGGCCAAGCAAAAGGGTACCTTGTTGGCG
TGCAGGTGACGCAGCAGGCGCTCAGCACCTGGCATCAACTGGGCGTTCCG
CATCAGGATCTCGGTGTTGGCGCGCTGCTGGCGTGCGTACTCCTCCCACG
ACATCGGCAGCTCGTAGTGCTCGACCATGAACCGGGCCAGCGGTTCCGTC
TGCAGGCCCATGACCTGCTCCTTGATCTCAAAGGGATATGTCTTGCCGTA
GGGCTCGAGGATCATTTCGGTGGCCACAGTATAAAGGCGTTCGGTGTCCA
GCAGCAGACCGTCCATGTCGAAGACGCAGTGCGTCACCTTTCGCAGCACT
TTGTTGGCCATGTCGACTGATAACT

BO18247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15441-PA 696 Gs1l-RA 1..693 711..19 3465 100 Minus
CG15441-PB 696 Gs1l-RB 282..693 430..19 2060 100 Minus
CG15441-PB 696 Gs1l-RB 1..68 711..644 340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-RA 984 CG15441-RA 152..848 715..19 3470 99.9 Minus
Gs1l-RB 1038 CG15441-RB 435..846 430..19 2060 100 Minus
Gs1l-RB 1038 CG15441-RB 150..221 715..644 345 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4455329..4455740 19..430 2060 100 Plus
2L 23513712 2L 4456112..4456333 427..648 1110 100 Plus
2L 23513712 2L 4456386..4456453 648..715 325 98.5 Plus
Blast to na_te.dros performed on 2015-02-08 11:51:13 has no hits.

BO18247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:25 Download gff for BO18247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15441-PA 1..696 16..711 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:26 Download gff for BO18247.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 152..855 11..715 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:41 Download gff for BO18247.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 152..855 11..715 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:41 Download gff for BO18247.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4455322..4455738 11..428 99 <- Plus
2L 4456114..4456332 429..647 100 <- Plus
2L 4456386..4456453 648..715 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:26 Download gff for BO18247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4455322..4455738 11..428 99 <- Plus
arm_2L 4456114..4456332 429..647 100 <- Plus
arm_2L 4456386..4456453 648..715 98   Plus

BO18247.5prime Sequence

725 bp (718 high quality bases) assembled on 2006-10-13

> BO18247.5prime
GAAGTTATCAGTCGACATGGCCAACAAAGTGCTGCGAAAGGTGACGCACT
GCGTCTTCGACATGGACGGTCTGCTGCTGGACACCGAACGCCTTTATACT
GTGGCCACCGAAATGATCCTCGAGCCCTACGGCAAGACATATCCCTTTGA
GATCAAGGAGCAGGTCATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCA
TGGTCGAGCACTACGAGCTGCCGATGTCGTGGGAGGAGTACGCACGCCAG
CAGCGCGCCAACACCGAGATCCTGATGCGGAACGCCCAGTTGATGCCAGG
TGCTGAGCGCCTGCTGCGTCACCTGCACGCCAACAAGGTACCCTTTTGCT
TGGCCACCAGCTCCGGCGCCGACATGGTCGAGCTGAAGACGGCCCAACAT
CGGGAGCTGTTCTCCCTGTTTAACCACAAGGTGTGCGGTTCGTCGGACAA
GGAGGTGGTCAACGGCAAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCG
GCAGATTCGGTGTGCCGCCCAAACCGTCCGACTGCCTGGTGTTCGAGGAC
TCGCCGAACGGCGTGACGGCTGCCAACAGCGCCGGAATGCAGGTGGTGAT
GGTGCCGGACCCACGACTGTCCCAGGAAAAGACCTCGCACGCCACACAAG
TGCTGGCCTCGTTGGCGGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCC
TTCACGGATGCAAGCTTTCTAGACC

BO18247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15441-PA 696 Gs1l-RA 1..693 17..709 3465 100 Plus
CG15441-PB 696 Gs1l-RB 282..693 298..709 2060 100 Plus
CG15441-PB 696 Gs1l-RB 1..68 17..84 340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-RA 984 CG15441-RA 152..848 13..709 3470 99.9 Plus
Gs1l-RB 1038 CG15441-RB 435..846 298..709 2060 100 Plus
Gs1l-RB 1038 CG15441-RB 150..221 13..84 345 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4455329..4455740 709..298 2060 100 Minus
2L 23513712 2L 4456112..4456333 301..80 1110 100 Minus
2L 23513712 2L 4456386..4456453 80..13 325 98.5 Minus
Blast to na_te.dros performed on 2015-02-10 16:02:36 has no hits.

BO18247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:25 Download gff for BO18247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15441-PA 1..696 17..712 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:51 Download gff for BO18247.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 152..855 13..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:40 Download gff for BO18247.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 152..855 13..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:40 Download gff for BO18247.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4455322..4455738 300..717 99 <- Minus
2L 4456114..4456332 81..299 100 <- Minus
2L 4456386..4456453 13..80 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:51 Download gff for BO18247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4455322..4455738 300..717 99 <- Minus
arm_2L 4456114..4456332 81..299 100 <- Minus
arm_2L 4456386..4456453 13..80 98   Minus

BO18247.complete Sequence

727 bp assembled on 2006-10-11

GenBank Submission: FJ634361

> BO18247.complete
GAAGTTATCAGTCGACATGGCCAACAAAGTGCTGCGAAAGGTGACGCACT
GCGTCTTCGACATGGACGGTCTGCTGCTGGACACCGAACGCCTTTATACT
GTGGCCACCGAAATGATCCTCGAGCCCTACGGCAAGACATATCCCTTTGA
GATCAAGGAGCAGGTCATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCA
TGGTCGAGCACTACGAGCTGCCGATGTCGTGGGAGGAGTACGCACGCCAG
CAGCGCGCCAACACCGAGATCCTGATGCGGAACGCCCAGTTGATGCCAGG
TGCTGAGCGCCTGCTGCGTCACCTGCACGCCAACAAGGTACCCTTTTGCT
TGGCCACCAGCTCCGGCGCCGACATGGTCGAGCTGAAGACGGCCCAACAT
CGGGAGCTGTTCTCCCTGTTTAACCACAAGGTGTGCGGTTCGTCGGACAA
GGAGGTGGTCAACGGCAAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCG
GCAGATTCGGTGTGCCGCCCAAACCGTCCGACTGCCTGGTGTTCGAGGAC
TCGCCGAACGGCGTGACGGCTGCCAACAGCGCCGGAATGCAGGTGGTGAT
GGTGCCGGACCCACGACTGTCCCAGGAAAAGACCTCGCACGCCACACAAG
TGCTGGCCTCGTTGGCGGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCC
TTCACGGATGCAAGCTTTCTAGACCAT

BO18247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-RA 696 CG15441-PA 1..693 17..709 3465 100 Plus
Gs1l-RB 696 CG15441-PB 282..693 298..709 2060 100 Plus
Gs1l-RB 696 CG15441-PB 1..68 17..84 340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-RA 984 CG15441-RA 152..848 13..709 3470 99.9 Plus
Gs1l-RB 1038 CG15441-RB 435..846 298..709 2060 100 Plus
Gs1l-RB 1038 CG15441-RB 150..221 13..84 345 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4455329..4455740 709..298 2060 100 Minus
2L 23513712 2L 4456112..4456333 301..80 1110 100 Minus
2L 23513712 2L 4456386..4456453 80..13 325 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 10:07:59 has no hits.

BO18247.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:19 Download gff for BO18247.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 1..696 17..712 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:28 Download gff for BO18247.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 167..870 13..717 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:55 Download gff for BO18247.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 156..848 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:19 Download gff for BO18247.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 167..870 13..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:54 Download gff for BO18247.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 156..848 17..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:54 Download gff for BO18247.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4455326..4455738 300..711 99 <- Minus
2L 4456114..4456332 81..299 100 <- Minus
2L 4456386..4456449 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:55 Download gff for BO18247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4456386..4456449 17..80 100   Minus
arm_2L 4455326..4455738 300..711 99 <- Minus
arm_2L 4456114..4456332 81..299 100 <- Minus

BO18247.pep Sequence

Translation from 16 to 727

> BO18247.pep
MANKVLRKVTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQV
MGLQTEPLARFMVEHYELPMSWEEYARQQRANTEILMRNAQLMPGAERLL
RHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNG
KPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPR
LSQEKTSHATQVLASLADFKPEQFGLPAFTDASFLDH

BO18247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-PA 231 CG15441-PA 1..231 1..231 1203 100 Plus
Gs1l-PB 231 CG15441-PB 1..231 1..231 917 77.1 Plus
CG31924-PB 236 CG31924-PB 16..234 9..227 532 48.9 Plus
CG5565-PA 240 CG5565-PA 10..235 9..233 463 40.3 Plus
CG5556-PB 299 CG5556-PB 27..246 9..230 292 31.1 Plus