Clone Sequence Records
BO18247.3prime Sequence
725 bp (648 high quality bases) assembled on 2006-10-13
> BO18247.3prime
ATGGTCTAGAAAGCTTGCATCCGTGAAGGCGGGCAGCCCGAACTGCTCCG
GCTTGAAGTCCGCCAACGAGGCCAGCACTTGTGTGGCGTGCGAGGTCTTT
TCCTGGGACAGTCGTGGGTCCGGCACCATCACCACCTGCATTCCGGCGCT
GTTGGCAGCCGTCACGCCGTTCGGCGAGTCCTCGAACACCAGGCAGTCGG
ACGGTTTGGGCGGCACACCGAATCTGCCGGCGGCCACTAGGAAAATGTCG
GGCGCAGGCTTGCCGTTGACCACCTCCTTGTCCGACGAACCGCACACCTT
GTGGTTAAACAGGGAGAACAGCTCCCGATGTTGGGCCGTCTTCAGCTCGA
CCATGTCGGCGCCGGAGCTGGTGGCCAAGCAAAAGGGTACCTTGTTGGCG
TGCAGGTGACGCAGCAGGCGCTCAGCACCTGGCATCAACTGGGCGTTCCG
CATCAGGATCTCGGTGTTGGCGCGCTGCTGGCGTGCGTACTCCTCCCACG
ACATCGGCAGCTCGTAGTGCTCGACCATGAACCGGGCCAGCGGTTCCGTC
TGCAGGCCCATGACCTGCTCCTTGATCTCAAAGGGATATGTCTTGCCGTA
GGGCTCGAGGATCATTTCGGTGGCCACAGTATAAAGGCGTTCGGTGTCCA
GCAGCAGACCGTCCATGTCGAAGACGCAGTGCGTCACCTTTCGCAGCACT
TTGTTGGCCATGTCGACTGATAACT
BO18247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15441-PA | 696 | Gs1l-RA | 1..693 | 711..19 | 3465 | 100 | Minus |
CG15441-PB | 696 | Gs1l-RB | 282..693 | 430..19 | 2060 | 100 | Minus |
CG15441-PB | 696 | Gs1l-RB | 1..68 | 711..644 | 340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-RA | 984 | CG15441-RA | 152..848 | 715..19 | 3470 | 99.9 | Minus |
Gs1l-RB | 1038 | CG15441-RB | 435..846 | 430..19 | 2060 | 100 | Minus |
Gs1l-RB | 1038 | CG15441-RB | 150..221 | 715..644 | 345 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4455329..4455740 | 19..430 | 2060 | 100 | Plus |
2L | 23513712 | 2L | 4456112..4456333 | 427..648 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 4456386..4456453 | 648..715 | 325 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:51:13 has no hits.
BO18247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:25 Download gff for
BO18247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15441-PA | 1..696 | 16..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:26 Download gff for
BO18247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 152..855 | 11..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:41 Download gff for
BO18247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 152..855 | 11..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:41 Download gff for
BO18247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4455322..4455738 | 11..428 | 99 | <- | Plus |
2L | 4456114..4456332 | 429..647 | 100 | <- | Plus |
2L | 4456386..4456453 | 648..715 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:26 Download gff for
BO18247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4455322..4455738 | 11..428 | 99 | <- | Plus |
arm_2L | 4456114..4456332 | 429..647 | 100 | <- | Plus |
arm_2L | 4456386..4456453 | 648..715 | 98 | | Plus |
BO18247.5prime Sequence
725 bp (718 high quality bases) assembled on 2006-10-13
> BO18247.5prime
GAAGTTATCAGTCGACATGGCCAACAAAGTGCTGCGAAAGGTGACGCACT
GCGTCTTCGACATGGACGGTCTGCTGCTGGACACCGAACGCCTTTATACT
GTGGCCACCGAAATGATCCTCGAGCCCTACGGCAAGACATATCCCTTTGA
GATCAAGGAGCAGGTCATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCA
TGGTCGAGCACTACGAGCTGCCGATGTCGTGGGAGGAGTACGCACGCCAG
CAGCGCGCCAACACCGAGATCCTGATGCGGAACGCCCAGTTGATGCCAGG
TGCTGAGCGCCTGCTGCGTCACCTGCACGCCAACAAGGTACCCTTTTGCT
TGGCCACCAGCTCCGGCGCCGACATGGTCGAGCTGAAGACGGCCCAACAT
CGGGAGCTGTTCTCCCTGTTTAACCACAAGGTGTGCGGTTCGTCGGACAA
GGAGGTGGTCAACGGCAAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCG
GCAGATTCGGTGTGCCGCCCAAACCGTCCGACTGCCTGGTGTTCGAGGAC
TCGCCGAACGGCGTGACGGCTGCCAACAGCGCCGGAATGCAGGTGGTGAT
GGTGCCGGACCCACGACTGTCCCAGGAAAAGACCTCGCACGCCACACAAG
TGCTGGCCTCGTTGGCGGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCC
TTCACGGATGCAAGCTTTCTAGACC
BO18247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15441-PA | 696 | Gs1l-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
CG15441-PB | 696 | Gs1l-RB | 282..693 | 298..709 | 2060 | 100 | Plus |
CG15441-PB | 696 | Gs1l-RB | 1..68 | 17..84 | 340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-RA | 984 | CG15441-RA | 152..848 | 13..709 | 3470 | 99.9 | Plus |
Gs1l-RB | 1038 | CG15441-RB | 435..846 | 298..709 | 2060 | 100 | Plus |
Gs1l-RB | 1038 | CG15441-RB | 150..221 | 13..84 | 345 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4455329..4455740 | 709..298 | 2060 | 100 | Minus |
2L | 23513712 | 2L | 4456112..4456333 | 301..80 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 4456386..4456453 | 80..13 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:02:36 has no hits.
BO18247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:25 Download gff for
BO18247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15441-PA | 1..696 | 17..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:51 Download gff for
BO18247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 152..855 | 13..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:40 Download gff for
BO18247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 152..855 | 13..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:40 Download gff for
BO18247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4455322..4455738 | 300..717 | 99 | <- | Minus |
2L | 4456114..4456332 | 81..299 | 100 | <- | Minus |
2L | 4456386..4456453 | 13..80 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:51 Download gff for
BO18247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4455322..4455738 | 300..717 | 99 | <- | Minus |
arm_2L | 4456114..4456332 | 81..299 | 100 | <- | Minus |
arm_2L | 4456386..4456453 | 13..80 | 98 | | Minus |
BO18247.complete Sequence
727 bp assembled on 2006-10-11
GenBank Submission: FJ634361
> BO18247.complete
GAAGTTATCAGTCGACATGGCCAACAAAGTGCTGCGAAAGGTGACGCACT
GCGTCTTCGACATGGACGGTCTGCTGCTGGACACCGAACGCCTTTATACT
GTGGCCACCGAAATGATCCTCGAGCCCTACGGCAAGACATATCCCTTTGA
GATCAAGGAGCAGGTCATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCA
TGGTCGAGCACTACGAGCTGCCGATGTCGTGGGAGGAGTACGCACGCCAG
CAGCGCGCCAACACCGAGATCCTGATGCGGAACGCCCAGTTGATGCCAGG
TGCTGAGCGCCTGCTGCGTCACCTGCACGCCAACAAGGTACCCTTTTGCT
TGGCCACCAGCTCCGGCGCCGACATGGTCGAGCTGAAGACGGCCCAACAT
CGGGAGCTGTTCTCCCTGTTTAACCACAAGGTGTGCGGTTCGTCGGACAA
GGAGGTGGTCAACGGCAAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCG
GCAGATTCGGTGTGCCGCCCAAACCGTCCGACTGCCTGGTGTTCGAGGAC
TCGCCGAACGGCGTGACGGCTGCCAACAGCGCCGGAATGCAGGTGGTGAT
GGTGCCGGACCCACGACTGTCCCAGGAAAAGACCTCGCACGCCACACAAG
TGCTGGCCTCGTTGGCGGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCC
TTCACGGATGCAAGCTTTCTAGACCAT
BO18247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-RA | 696 | CG15441-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Gs1l-RB | 696 | CG15441-PB | 282..693 | 298..709 | 2060 | 100 | Plus |
Gs1l-RB | 696 | CG15441-PB | 1..68 | 17..84 | 340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-RA | 984 | CG15441-RA | 152..848 | 13..709 | 3470 | 99.9 | Plus |
Gs1l-RB | 1038 | CG15441-RB | 435..846 | 298..709 | 2060 | 100 | Plus |
Gs1l-RB | 1038 | CG15441-RB | 150..221 | 13..84 | 345 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4455329..4455740 | 709..298 | 2060 | 100 | Minus |
2L | 23513712 | 2L | 4456112..4456333 | 301..80 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 4456386..4456453 | 80..13 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:07:59 has no hits.
BO18247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:19 Download gff for
BO18247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 1..696 | 17..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:28 Download gff for
BO18247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 167..870 | 13..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:55 Download gff for
BO18247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 156..848 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:19 Download gff for
BO18247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 167..870 | 13..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:54 Download gff for
BO18247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1l-RA | 156..848 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:54 Download gff for
BO18247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4455326..4455738 | 300..711 | 99 | <- | Minus |
2L | 4456114..4456332 | 81..299 | 100 | <- | Minus |
2L | 4456386..4456449 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:55 Download gff for
BO18247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4456386..4456449 | 17..80 | 100 | | Minus |
arm_2L | 4455326..4455738 | 300..711 | 99 | <- | Minus |
arm_2L | 4456114..4456332 | 81..299 | 100 | <- | Minus |
BO18247.pep Sequence
Translation from 16 to 727
> BO18247.pep
MANKVLRKVTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQV
MGLQTEPLARFMVEHYELPMSWEEYARQQRANTEILMRNAQLMPGAERLL
RHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNG
KPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPR
LSQEKTSHATQVLASLADFKPEQFGLPAFTDASFLDH
BO18247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1l-PA | 231 | CG15441-PA | 1..231 | 1..231 | 1203 | 100 | Plus |
Gs1l-PB | 231 | CG15441-PB | 1..231 | 1..231 | 917 | 77.1 | Plus |
CG31924-PB | 236 | CG31924-PB | 16..234 | 9..227 | 532 | 48.9 | Plus |
CG5565-PA | 240 | CG5565-PA | 10..235 | 9..233 | 463 | 40.3 | Plus |
CG5556-PB | 299 | CG5556-PB | 27..246 | 9..230 | 292 | 31.1 | Plus |