Clone Sequence Records
BO18254.3prime Sequence
832 bp (754 high quality bases) assembled on 2006-10-13
> BO18254.3prime
ATGGTCTAGAAAGCTTGCGTTGCTCCCGCTGCTGCTCTTCAGCTGCACCC
CCAGAACCTCCCGAAGTTCGCCTAGCTCCTGCGGTCCCTGCATCAAGCGC
TTGACGCCTCGCGGCAGACCACGGCACGATGCCAAGTTGATGGAGCTCAT
ATTTTGGCAGTTCGTCAGTATTTCCTTTACCGCCTCATCGGAAACAGAGG
AGCCGCATAGATTCAAATGAGCCAACGGCGAATCTCTGCCCTTTTCCGCT
AGGGCGCGCAACGCATTATCAATGGGCTGCTGCATATTCGCCCAAGCCAA
ATCCAGTTCTATGAGACTGTGCGCCCACTTTGAGGCAATGAGTTCCAGAC
CCGACCCCATATCTCGTGTGACTGAGCAACCTGACAGGAATAAATGCTTG
ATATCCCAGGCAGGTAAGCGGATTAGGCTCTCGTGCGTCAGTCGTGTACA
GTTGCGTACGTCCAGTAGCTTTAGCTTGGAGCTGCTCTTAAGGATGCGCT
GCAGATGGTCGTCGCTTATGATGCGGGATTCATCTGTTAAGGCAGCCACG
GACAGTTCTTCAAGTTCCGGAAAACCAGGTGAGTCCATAATTTCCTGCAT
TGATGCCGTGCTTGGCGTTATATGAGAGTTTGTCACACGCAGGACCTTTA
GCTTCTGGCAGCCACGCTGCAACTTCTCAATGTGGAGTACACCGTGTGAT
GTGGCCTGCGTGGTCACGTTCGAGAGATCCAATAATGTTAGATTCGGACA
GTGCGTCGAAAGAATTCCGACTATTTGTGGTATTCCTGCCAGACGATTGT
GCGCCAAATAGAGATGTGTTAGACGGCTGCCC
BO18254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13213-PC | 2163 | CG13213-RC | 1347..2160 | 832..19 | 4070 | 100 | Minus |
| CG13213-PB | 2163 | CG13213-RB | 1347..2160 | 832..19 | 4070 | 100 | Minus |
| CG13213-PA | 2163 | CG13213-RA | 1347..2160 | 832..19 | 4070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-RA | 3700 | CG13213-RA | 2068..2881 | 832..19 | 4070 | 100 | Minus |
| Fbl6-RB | 3375 | CG13213-RB | 1743..2556 | 832..19 | 4070 | 100 | Minus |
| Fbl6-RC | 3098 | CG13213-RC | 1466..2279 | 832..19 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11286431..11286665 | 354..588 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 11285967..11286168 | 19..220 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 11286719..11286887 | 589..757 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 11286238..11286373 | 221..356 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 11286951..11287026 | 757..832 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:21:43 has no hits.
BO18254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:26 Download gff for
BO18254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13213-PA | 1347..2163 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:37 Download gff for
BO18254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl6-RC | 1466..2282 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:41:55 Download gff for
BO18254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbl6-RC | 1466..2282 | 15..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:41:55 Download gff for
BO18254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11286433..11286665 | 356..588 | 100 | <- | Plus |
| 2R | 11286719..11286886 | 589..756 | 100 | <- | Plus |
| 2R | 11286951..11287026 | 757..832 | 100 | | Plus |
| 2R | 11285964..11286168 | 15..220 | 99 | <- | Plus |
| 2R | 11286238..11286372 | 221..355 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:37 Download gff for
BO18254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7173469..7173673 | 15..220 | 99 | <- | Plus |
| arm_2R | 7173743..7173877 | 221..355 | 100 | <- | Plus |
| arm_2R | 7173938..7174170 | 356..588 | 100 | <- | Plus |
| arm_2R | 7174224..7174391 | 589..756 | 100 | <- | Plus |
| arm_2R | 7174456..7174531 | 757..832 | 100 | | Plus |
BO18254.5prime Sequence
819 bp (746 high quality bases) assembled on 2006-10-13
> BO18254.5prime
GAAGTTATCAGTCGACATGAGCGAATCTCTATCTTCTCAAGTGGAGGAGA
CCAAAGTGTCCGATGATGATGGTGTAAAAGAGAAAGCTGAAGTGTCCACC
GCCAAAGATTCGGCGGAAACGGCTATGGAAGTGGAGGCAGATGACACTGG
TGGTCAGCAGCCGGAGCAGAGTGAATTGTTGGATAAGGAGAAATCTGCCA
CGGTGGATATAAACACACTCACTCCCTCGACGCCCTCACAAACCCCGCCA
CAACTGCTGGCCGTCGAAACTGCCACATCGGGAAGCACGGCCGTCATTCC
GGAGAACATCCTGTCCCCGCCCAAGTCAGAAACTCAAACCGATGAGACTA
ACACGGCAACATCGACGTCCTGCTCCCCAGCCTCTGACGGTCAGCGGTCG
CCGGCGGCGGATCAACAGTCATCGGCACCACCGCCACAGGTACAGGCACA
GGCCACGCCGGCGCCGGTCAATGGCTCCGTACCAAAGTCGGGGAAACCAC
TCTCCACAGCGCTCAGCGGCAAGAAGACCAGCAAAGCGGCCACTACGTCA
CCACGTGCATCCAGATGCCGCAAAACCAAGGCGCTGCCCATGTACGAAAG
CGAAATCAGCGACAACAAGATGGGTATCCGACTGTGCATCAAGAAATCTG
ATGCCGGAGAAGGCGCACCTGCTGGTGTCACATCTCCGCCAGTTGCAGTT
CCCGCAGCAACAAAAACTGTGCGCAAGCGCGTCCGTAAACCAAAGCAACA
GGACAGCGATGAGGCCGAGTATGAGCCGCGCAAGAAAAAAGGCGGAGGAG
GTGGTAGTGGCGGCGAAAA
BO18254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13213-PC | 2163 | CG13213-RC | 1..803 | 17..819 | 4015 | 100 | Plus |
| CG13213-PB | 2163 | CG13213-RB | 1..803 | 17..819 | 4015 | 100 | Plus |
| CG13213-PA | 2163 | CG13213-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-RA | 3700 | CG13213-RA | 722..1524 | 17..819 | 4015 | 100 | Plus |
| Fbl6-RB | 3375 | CG13213-RB | 397..1199 | 17..819 | 4015 | 100 | Plus |
| Fbl6-RC | 3098 | CG13213-RC | 120..922 | 17..819 | 4015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11287742..11288544 | 819..17 | 4015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:40:45 has no hits.
BO18254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:27 Download gff for
BO18254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13213-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:51 Download gff for
BO18254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl6-RC | 113..918 | 6..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:41 Download gff for
BO18254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbl6-RC | 113..918 | 6..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:41 Download gff for
BO18254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11287746..11288551 | 6..815 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:51 Download gff for
BO18254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7175251..7176056 | 6..815 | 99 | | Minus |
BO18254.complete Sequence
2194 bp assembled on 2007-03-23
GenBank Submission: FJ634362
> BO18254.complete
GAAGTTATCAGTCGACATGAGCGAATCTCTATCTTCTCAAGTGGAGGAGA
CCAAAGTGTCCGATGATGATGGTGTAAAAGAGAAAGCTGAAGTGTCCACC
GCCAAAGATTCGGCGGAAACGGCTATGGAAGTGGAGGCAGATGACACTGG
TGGTCAGCAGCCGGAGCAGAGTGAATTGTTGGATAAGGAGAAATCTGCCA
CGGTGGATATAAACACACTCACTCCCTCGACGCCCTCACAAACCCCGCCA
CAACTGCTGGCCGTCGAAACTGCCACATCGGGAAGCACGGCCGTCATTCC
GGAGAACATCCTGTCCCCGCCCAAGTCAGAAACTCAAACCGATGAGACTA
ACACGGCAACATCGACGTCCTGCTCCCCAGCCTCTGACGGTCAGCGGTCG
CCGGCGGCGGATCAACAGTCATCGGCACCACCGCCACAGGTACAGGCACA
GGCCACGCCGGCGCCGGTCAATGGCTCCGTACCAAAGTCGGGGAAACCAC
TCTCCACAGCGCTCAGCGGCAAGAAGACCAGCAAAGCGGCCACTACGTCA
CCACGTGCATCCAGATGCCGCAAAACCAAGGCGCTGCCCATGTACGAAAG
CGAAATCAGCGACAACAAGATGGGTATCCGACTGTGCATCAAGAAATCTG
ATGCCGGAGAAGGCGCACCTGCTGGTGTCACATCTCCGCCAGTTGCAGTT
CCCGCAGCAACAAAAACTGTGCGCAAGCGCGTCCGTAAACCAAAGCAACA
GGACAGCGATGAGGCCGAGTATGAGCCGCGCAAGAAAAAAGGCGGAGGAG
GTGGTAGTGGCGGCGAAAAGAAGGTTTCAACGAGTCCGGATGCTGCGGAG
GCGGCTGGCGATCCAGTCGAGCAGAGTGTCTGGGCTCAAAAGCTGCCCGA
GGAAGTCCTATTCAGAATCTTTGAGCATGCTGTGGATACACAGGGCTGTC
TGCCCACCCTGTTTCGCCTTGGCAGAGTTTGCTCGCTCTGGCGGCAGGTG
TCTCTTAGGCCTACTCTGTGGCGCACTATGGATCTTACCACATGGGTCAA
AGAGAAATATCGCACCGAACTCAAGCTCAAGTGGTTTGTCGACAACCGCT
GCAGTGCCTGTACAGACTTGAATGTTTCCAATTGGAAAATATCAGACATA
AATTGCTTCCTTGCCAAATTGTCAAGCGGGTGCCCGAACCTTGCAGGCAT
TACGCTCTCCGGCTGGAAAGGTTTCACTTCGGATCATCTTACGTATTTGG
TGGATAACATGCACAAGTTGCAGCGCTTGGACTTAAGTTCCATCAATGTT
GAGATGAATGCCAGCAAGAGCGCCGTGGGTGTCAACTCCCTATGCAATGC
ACTCCAGACCATGGGCAGCCGTCTAACACATCTCTATTTGGCGCACAATC
GTCTGGCAGGAATACCACAAATAGTCGGAATTCTTTCGACGCACTGTCCG
AATCTAACATTATTGGATCTCTCGAACGTGACCACGCAGGCCACATCACA
CGGTGTACTCCACATTGAGAAGTTGCAGCGTGGCTGCCAGAAGCTAAAGG
TCCTGCGTGTGACAAACTCTCATATAACGCCAAGCACGGCATCAATGCAG
GAAATTATGGACTCACCTGGTTTTCCGGAACTTGAAGAACTGTCCGTGGC
TGCCTTAACAGATGAATCCCGCATCATAAGCGACGACCATCTGCAGCGCA
TCCTTAAGAGCAGCTCCAAGCTAAAGCTACTGGACGTACGCAACTGTACA
CGACTGACGCACGAGAGCCTAATCCGCTTACCTGCCTGGGATATCAAGCA
TTTATTCCTGTCAGGTTGCTCAGTCACACGAGATATGGGGTCGGGTCTGG
AACTCATTGCCTCAAAGTGGGCGCACAGTCTCATAGAACTGGATTTGGCT
TGGGCGAATATGCAGCAGCCCATTGATAATGCGTTGCGCGCCCTAGCGGA
AAAGGGCAGAGATTCGCCGTTGGCTCATTTGAATCTATGCGGCTCCTCTG
TTTCCGATGAGGCGGTAAAGGAAATACTGACGAACTGCCAAAATATGAGC
TCCATCAACTTGGCATCGTGCCGTGGTCTGCCGCGAGGCGTCAAGCGCTT
GATGCAGGGACCGCAGGAGCTAGGCGAACTTCGGGAGGTTCTGGGGGTGC
AGCTGAAGAGCAGCAGCGGGAGCAACGCAAGCTTTCTAGACCAT
BO18254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-RA | 2163 | CG13213-PA | 1..2160 | 17..2176 | 10800 | 100 | Plus |
| Fbl6-RB | 2163 | CG13213-PB | 1..2160 | 17..2176 | 10800 | 100 | Plus |
| Fbl6-RC | 2163 | CG13213-PC | 1..2160 | 17..2176 | 10800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-RA | 3700 | CG13213-RA | 722..2881 | 17..2176 | 10800 | 100 | Plus |
| Fbl6-RB | 3375 | CG13213-RB | 397..2556 | 17..2176 | 10800 | 100 | Plus |
| Fbl6-RC | 3098 | CG13213-RC | 120..2279 | 17..2176 | 10800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11287645..11288544 | 916..17 | 4500 | 100 | Minus |
| 2R | 25286936 | 2R | 11286431..11286665 | 1841..1607 | 1175 | 100 | Minus |
| 2R | 25286936 | 2R | 11287376..11287586 | 1127..917 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 11285967..11286168 | 2176..1975 | 1010 | 100 | Minus |
| 2R | 25286936 | 2R | 11287146..11287317 | 1299..1128 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 11286719..11286887 | 1606..1438 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 11286951..11287091 | 1438..1298 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 11286238..11286373 | 1974..1839 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:26:46 has no hits.
BO18254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:23 Download gff for
BO18254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13213-RA | 1..2163 | 17..2180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:29 Download gff for
BO18254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13213-RA | 691..2860 | 6..2180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:20 Download gff for
BO18254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl6-RC | 120..2279 | 17..2178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:23 Download gff for
BO18254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13213-RA | 691..2860 | 6..2180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:40 Download gff for
BO18254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbl6-RC | 120..2279 | 17..2178 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:40 Download gff for
BO18254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11285965..11286168 | 1975..2178 | 99 | <- | Minus |
| 2R | 11286238..11286372 | 1840..1974 | 100 | <- | Minus |
| 2R | 11286433..11286665 | 1607..1839 | 100 | <- | Minus |
| 2R | 11286719..11286886 | 1439..1606 | 100 | <- | Minus |
| 2R | 11286951..11287091 | 1298..1438 | 100 | <- | Minus |
| 2R | 11287148..11287317 | 1128..1297 | 100 | <- | Minus |
| 2R | 11287376..11287586 | 917..1127 | 100 | <- | Minus |
| 2R | 11287645..11288544 | 17..916 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:20 Download gff for
BO18254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7173470..7173673 | 1975..2178 | 99 | <- | Minus |
| arm_2R | 7173743..7173877 | 1840..1974 | 100 | <- | Minus |
| arm_2R | 7173938..7174170 | 1607..1839 | 100 | <- | Minus |
| arm_2R | 7174224..7174391 | 1439..1606 | 100 | <- | Minus |
| arm_2R | 7174456..7174596 | 1298..1438 | 100 | <- | Minus |
| arm_2R | 7174653..7174822 | 1128..1297 | 100 | <- | Minus |
| arm_2R | 7174881..7175091 | 917..1127 | 100 | <- | Minus |
| arm_2R | 7175150..7176049 | 17..916 | 100 | | Minus |
BO18254.pep Sequence
Translation from 16 to 2194
> BO18254.pep
MSESLSSQVEETKVSDDDGVKEKAEVSTAKDSAETAMEVEADDTGGQQPE
QSELLDKEKSATVDINTLTPSTPSQTPPQLLAVETATSGSTAVIPENILS
PPKSETQTDETNTATSTSCSPASDGQRSPAADQQSSAPPPQVQAQATPAP
VNGSVPKSGKPLSTALSGKKTSKAATTSPRASRCRKTKALPMYESEISDN
KMGIRLCIKKSDAGEGAPAGVTSPPVAVPAATKTVRKRVRKPKQQDSDEA
EYEPRKKKGGGGGSGGEKKVSTSPDAAEAAGDPVEQSVWAQKLPEEVLFR
IFEHAVDTQGCLPTLFRLGRVCSLWRQVSLRPTLWRTMDLTTWVKEKYRT
ELKLKWFVDNRCSACTDLNVSNWKISDINCFLAKLSSGCPNLAGITLSGW
KGFTSDHLTYLVDNMHKLQRLDLSSINVEMNASKSAVGVNSLCNALQTMG
SRLTHLYLAHNRLAGIPQIVGILSTHCPNLTLLDLSNVTTQATSHGVLHI
EKLQRGCQKLKVLRVTNSHITPSTASMQEIMDSPGFPELEELSVAALTDE
SRIISDDHLQRILKSSSKLKLLDVRNCTRLTHESLIRLPAWDIKHLFLSG
CSVTRDMGSGLELIASKWAHSLIELDLAWANMQQPIDNALRALAEKGRDS
PLAHLNLCGSSVSDEAVKEILTNCQNMSSINLASCRGLPRGVKRLMQGPQ
ELGELREVLGVQLKSSSGSNASFLDH
BO18254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-PA | 720 | CG13213-PA | 1..720 | 1..720 | 3689 | 100 | Plus |
| Fbl6-PB | 720 | CG13213-PB | 1..720 | 1..720 | 3689 | 100 | Plus |
| Fbl6-PC | 720 | CG13213-PC | 1..720 | 1..720 | 3689 | 100 | Plus |
