Clone BO18258 Report

Search the DGRC for BO18258

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG31038-RC
Protein status:BO18258.pep: validated full length
Sequenced Size:1357

Clone Sequence Records

BO18258.3prime Sequence

812 bp (715 high quality bases) assembled on 2006-10-13

> BO18258.3prime
ATGGTCTAGAAAGCTTGCTGTGGGTCGTGACGGAGCCGGCGGTTTTCGCT
CCAGGGACAAGGATTGCAGCACGGCGGGAGGTGGCGGTGGCGGGGCACTC
CGCATCCTGGGCACCGGCTTCTGGTCCTTGCTGGCCGTGGCCAGTGAGTC
CCTCAGCACCTTTGGCTGCGTCGTTATGACCTTTGGTATGGTTCCCAGAT
GCTTCGACGTGCCATCAGCACCGCCCTCCAATCGCACCGACTCGATGGAC
GAGGACACCCGGCTGTTGCCCTCCTCGTCCAGCTCGTTTCCCACCTCCAC
CTCCACCTCGTCGTCCTCATCCTCGTTCTCCTGATCTTCGATCAGGGCGC
GGAACTCTTGGATCGATTCGTTAAGCACCCACAGTTGTGACAGCAACGAG
AGATCTAGTTGACGCAGTCCGTTCATTTCCTTCCGCAGCGTCGCAATCTG
GGCATCCAGAGTGCTGCCCGCCTCGACCGCCTGGGGGTTTCCTTTGGCGG
ATAAGCTGGGGGACTTGGCCTCGGATTTGGCCACCAGCATTGGTGGTATG
GATGTGTTTCCGTTCGGCGAGGAGGGCAGTGACTTATCGGTGGCATGCTC
CTTGGTATCCTGTGTCTCCACAGCAAGATTGTCGTTTGGTTTTCGGCTGC
CATCGCTGCTGTTATTGTTTCCTTCCACATCACTCAGGAGTCCCGAATCG
GAGCACAGTAACTTGTTGAAGCCGATGAGAGATTTCGGCAGCGGGGGCAG
CTCGCAAGCCGAGTTTCCAAGTTTAGTTCCAGCCCAACTATACCTTTGCT
TGGCACCCCAAT

BO18258.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-PC 1326 CG31038-RC 534..1323 808..19 3925 99.8 Minus
CG31038-PF 2193 CG31038-RF 1440..2190 769..19 3755 100 Minus
CG31038-PA 2193 CG31038-RA 1440..2190 769..19 3755 100 Minus
CG31038-PE 2193 CG31038-RE 1440..2190 769..19 3755 100 Minus
CG31038-PB 1818 CG31038-RB 1440..1785 769..424 1730 100 Minus
CG31038-PD 1818 CG31038-RD 1440..1785 769..424 1730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-RG 2369 CG31038-RG 933..1726 812..19 3940 99.7 Minus
CG31038-RC 2039 CG31038-RC 603..1396 812..19 3940 99.7 Minus
CG31038-RH 2015 CG31038-RH 622..1372 769..19 3755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29902183..29902588 424..19 2030 100 Minus
3R 32079331 3R 29897300..29897645 769..424 1730 100 Minus
3R 32079331 3R 29897187..29897229 812..770 185 95.3 Minus
Blast to na_te.dros performed on 2015-02-02 17:58:23 has no hits.

BO18258.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:32 Download gff for BO18258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31038-PC 530..1326 16..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:42 Download gff for BO18258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 603..1403 11..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:41 Download gff for BO18258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 603..1403 11..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:41 Download gff for BO18258.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29897187..29897229 770..812 95 -> Minus
3R 29897300..29897645 424..769 100 -> Minus
3R 29902184..29902595 11..423 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:42 Download gff for BO18258.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25722909..25722951 770..812 95 -> Minus
arm_3R 25723022..25723367 424..769 100 -> Minus
arm_3R 25727906..25728317 11..423 99   Minus

BO18258.5prime Sequence

806 bp (743 high quality bases) assembled on 2006-10-13

> BO18258.5prime
GAAGTTATCAGTCGACATGTTCATTTTTCCCATACTGTTTGTTCAAATCG
TGATTTCTAATGTCATAAGGAGTCTCAAGCGCCGTCTCGCAAAGCCGCTG
AAAATGTCCGAGGACCTGGACGAGCTCTTCCTGACGCCCATTCCGGCGCC
CTCGGCCGTGGAGCTGCAGCAGTGCATACTGTTCGGCTTCCGGCGCCGCC
TTCATCCCGCCCAGATATTCGAGGAGTGCCGCAACGCCTTTGGGCCCTTC
TGCCCCAGTGCGCAGTACGTGGCGAAGTGGTACCAGCGGTTCCAGGACGG
CTTCTTCAATCTGGACGAGAAGGACGACGAGGAGCTGAGGATCGGGCATG
GCGGCACGCCCACCACCTGCAGTGATTACGATGATGACAGTGATTGCGGG
GAGGCGACCGTTCTGCCCCTGATCCTAAGTGAAATGATCCAACGCAGTGA
GGAGGATGACGATGATGATGGTACTGATGGTTTTGAGAAGGAGAGTGATG
ATGGTCTAGATGGTCATGTGATTGGTTATTGGCAGGGTTATGGCTATTTG
GGTGGCAAGCAAAGGTATAGTTGGGCTGGAACTAAACTTGGAAACTCGGC
TTGCGAGCTGCCCCCGCTGCCGAAATCTCTCATCGGCTTCAACAAGTTAC
TGTGCTCCGATTCGGGACTCCTGAGTGATGTGGAAGGAAACAATAACAGC
AGCGATGGCAGCCGAAAACCAAACGACAATCTTGCTGTGGAGACACAGGA
TACCAAGGAGCATGCCACCGATAAGTCACTGCCCTCCTCGCCGAACGGAA
ACACAT

BO18258.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-PC 1326 CG31038-RC 1..790 17..806 3950 100 Plus
CG31038-PF 2193 CG31038-RF 1440..1657 589..806 1090 100 Plus
CG31038-PA 2193 CG31038-RA 1440..1657 589..806 1090 100 Plus
CG31038-PB 1818 CG31038-RB 1440..1657 589..806 1090 100 Plus
CG31038-PD 1818 CG31038-RD 1440..1657 589..806 1090 100 Plus
CG31038-PE 2193 CG31038-RE 1440..1657 589..806 1090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-RC 2039 CG31038-RC 74..863 17..806 3950 100 Plus
CG31038-RG 2369 CG31038-RG 443..1193 56..806 3755 100 Plus
CG31038-RH 2015 CG31038-RH 74..839 17..806 3580 97 Plus
CG31038-RG 2369 CG31038-RG 74..113 17..56 200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29896698..29897229 57..588 2660 100 Plus
3R 32079331 3R 29897300..29897517 589..806 1090 100 Plus
3R 32079331 3R 29895054..29895093 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:10:06 has no hits.

BO18258.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:32 Download gff for BO18258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31038-PC 1..790 17..806 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:16 Download gff for BO18258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 66..863 9..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:48 Download gff for BO18258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 66..863 9..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:48 Download gff for BO18258.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29895046..29895093 9..56 91 -> Plus
3R 29896698..29897229 57..588 100 -> Plus
3R 29897300..29897517 589..806 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:16 Download gff for BO18258.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25720768..25720815 9..56 91 -> Plus
arm_3R 25722420..25722951 57..588 100 -> Plus
arm_3R 25723022..25723239 589..806 100   Plus

BO18258.complete Sequence

1357 bp assembled on 2006-10-11

GenBank Submission: FJ634363

> BO18258.complete
GAAGTTATCAGTCGACATGTTCATTTTTCCCATACTGTTTGTTCAAATCG
TGATTTCTAATGTCATAAGGAGTCTCAAGCGCCGTCTCGCAAAGCCGCTG
AAAATGTCCGAGGACCTGGACGAGCTCTTCCTGACGCCCATTCCGGCGCC
CTCGGCCGTGGAGCTGCAGCAGTGCATACTGTTCGGCTTCCGGCGCCGCC
TTCATCCCGCCCAGATATTCGAGGAGTGCCGCAACGCCTTTGGGCCCTTC
TGCCCCAGTGCGCAGTACGTGGCGAAGTGGTACCAGCGGTTCCAGGACGG
CTTCTTCAATCTGGACGAGAAGGACGACGAGGAGCTGAGGATCGGGCATG
GCGGCACGCCCACCACCTGCAGTGATTACGATGATGACAGTGATTGCGGG
GAGGCGACCGTTCTGCCCCTGATCCTAAGTGAAATGATCCAACGCAGTGA
GGAGGATGACGATGATGATGGTACTGATGGTTTTGAGAAGGAGAGTGATG
ATGGTCTAGATGGTCATGTGATTGGTTATTGGCAGGGTTATGGCTATTTG
GGTGGCAAGCAAAGGTATAGTTGGGCTGGAACTAAACTTGGAAACTCGGC
TTGCGAGCTGCCCCCGCTGCCGAAATCTCTCATCGGCTTCAACAAGTTAC
TGTGCTCCGATTCGGGACTCCTGAGTGATGTGGAAGGAAACAATAACAGC
AGCGATGGCAGCCGAAAACCAAACGACAATCTTGCTGTGGAGACACAGGA
TACCAAGGAGCATGCCACCGATAAGTCACTGCCCTCCTCGCCGAACGGAA
ACACATCCATACCACCAATGCTGGTGGCCAAATCCGAGGCCAAGTCCCCC
AGCTTATCCGCCAAAGGAAACCCCCAGGCGGTCGAGGCGGGCAGCACTCT
GGATGCCCAGATTGCGACGCTGCGGAAGGAAATGAACGGACTGCGTCAAC
TAGATCTCTCGTTGCTGTCACAACTGTGGGTGCTTAACGAATCGATCCAA
GAGTTCCGCGCCCTGATCGAAGATCAGGAGAACGAGGATGAGGACGACGA
GGTGGAGGTGGAGGTGGGAAACGAGCTGGACGAGGAGGGCAACAGCCGGG
TGTCCTCGTCCATCGAGTCGGTGCGATTGGAGGGCGGTGCTGATGGCACG
TCGAAGCATCTGGGAACCATACCAAAGGTCATAACGACGCAGCCAAAGGT
GCTGAGGGACTCACTGGCCACGGCCAGCAAGGACCAGAAGCCGGTGCCCA
GGATGCGGAGTGCCCCGCCACCGCCACCTCCCGCCGTGCTGCAATCCTTG
TCCCTGGAGCGAAAACCGCCGGCTCCGTCACGACCCACAGCAAGCTTTCT
AGACCAT

BO18258.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-RC 1326 CG31038-PC 1..1323 17..1339 6615 100 Plus
CG31038-RG 1239 CG31038-PG 1..1236 104..1339 6180 100 Plus
CG31038-RH 1302 CG31038-PH 549..1299 589..1339 3755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-RC 2039 CG31038-RC 74..1396 17..1339 6615 100 Plus
CG31038-RG 2369 CG31038-RG 443..1726 56..1339 6420 100 Plus
CG31038-RH 2015 CG31038-RH 622..1372 589..1339 3755 100 Plus
CG31038-RG 2369 CG31038-RG 74..113 17..56 200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29896698..29897229 57..588 2660 100 Plus
3R 32079331 3R 29902183..29902588 934..1339 2030 100 Plus
3R 32079331 3R 29897300..29897645 589..934 1730 100 Plus
3R 32079331 3R 29895054..29895093 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:27:12 has no hits.

BO18258.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:21 Download gff for BO18258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 1..1326 17..1342 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:31 Download gff for BO18258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 64..1401 9..1347 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:26 Download gff for BO18258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 79..1396 22..1341 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:21 Download gff for BO18258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 64..1401 9..1347 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:42 Download gff for BO18258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 79..1396 22..1341 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:42 Download gff for BO18258.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29902184..29902588 935..1341 99   Plus
3R 29895059..29895093 22..56 100 -> Plus
3R 29896698..29897229 57..588 100 -> Plus
3R 29897300..29897645 589..934 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:26 Download gff for BO18258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25727906..25728310 935..1341 99   Plus
arm_3R 25720781..25720815 22..56 100 -> Plus
arm_3R 25722420..25722951 57..588 100 -> Plus
arm_3R 25723022..25723367 589..934 100 -> Plus

BO18258.pep Sequence

Translation from 16 to 1357

> BO18258.pep
MFIFPILFVQIVISNVIRSLKRRLAKPLKMSEDLDELFLTPIPAPSAVEL
QQCILFGFRRRLHPAQIFEECRNAFGPFCPSAQYVAKWYQRFQDGFFNLD
EKDDEELRIGHGGTPTTCSDYDDDSDCGEATVLPLILSEMIQRSEEDDDD
DGTDGFEKESDDGLDGHVIGYWQGYGYLGGKQRYSWAGTKLGNSACELPP
LPKSLIGFNKLLCSDSGLLSDVEGNNNSSDGSRKPNDNLAVETQDTKEHA
TDKSLPSSPNGNTSIPPMLVAKSEAKSPSLSAKGNPQAVEAGSTLDAQIA
TLRKEMNGLRQLDLSLLSQLWVLNESIQEFRALIEDQENEDEDDEVEVEV
GNELDEEGNSRVSSSIESVRLEGGADGTSKHLGTIPKVITTQPKVLRDSL
ATASKDQKPVPRMRSAPPPPPPAVLQSLSLERKPPAPSRPTASFLDH

BO18258.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-PC 441 CG31038-PC 1..441 1..441 2298 100 Plus
CG31038-PH 433 CG31038-PH 1..433 1..441 2227 98 Plus
CG31038-PG 412 CG31038-PG 1..412 30..441 2160 100 Plus
CG31038-PE 730 CG31038-PE 479..730 190..441 1269 99.6 Plus
CG31038-PA 730 CG31038-PA 479..730 190..441 1269 99.6 Plus