Clone Sequence Records
BO18258.3prime Sequence
812 bp (715 high quality bases) assembled on 2006-10-13
> BO18258.3prime
ATGGTCTAGAAAGCTTGCTGTGGGTCGTGACGGAGCCGGCGGTTTTCGCT
CCAGGGACAAGGATTGCAGCACGGCGGGAGGTGGCGGTGGCGGGGCACTC
CGCATCCTGGGCACCGGCTTCTGGTCCTTGCTGGCCGTGGCCAGTGAGTC
CCTCAGCACCTTTGGCTGCGTCGTTATGACCTTTGGTATGGTTCCCAGAT
GCTTCGACGTGCCATCAGCACCGCCCTCCAATCGCACCGACTCGATGGAC
GAGGACACCCGGCTGTTGCCCTCCTCGTCCAGCTCGTTTCCCACCTCCAC
CTCCACCTCGTCGTCCTCATCCTCGTTCTCCTGATCTTCGATCAGGGCGC
GGAACTCTTGGATCGATTCGTTAAGCACCCACAGTTGTGACAGCAACGAG
AGATCTAGTTGACGCAGTCCGTTCATTTCCTTCCGCAGCGTCGCAATCTG
GGCATCCAGAGTGCTGCCCGCCTCGACCGCCTGGGGGTTTCCTTTGGCGG
ATAAGCTGGGGGACTTGGCCTCGGATTTGGCCACCAGCATTGGTGGTATG
GATGTGTTTCCGTTCGGCGAGGAGGGCAGTGACTTATCGGTGGCATGCTC
CTTGGTATCCTGTGTCTCCACAGCAAGATTGTCGTTTGGTTTTCGGCTGC
CATCGCTGCTGTTATTGTTTCCTTCCACATCACTCAGGAGTCCCGAATCG
GAGCACAGTAACTTGTTGAAGCCGATGAGAGATTTCGGCAGCGGGGGCAG
CTCGCAAGCCGAGTTTCCAAGTTTAGTTCCAGCCCAACTATACCTTTGCT
TGGCACCCCAAT
BO18258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-PC | 1326 | CG31038-RC | 534..1323 | 808..19 | 3925 | 99.8 | Minus |
CG31038-PF | 2193 | CG31038-RF | 1440..2190 | 769..19 | 3755 | 100 | Minus |
CG31038-PA | 2193 | CG31038-RA | 1440..2190 | 769..19 | 3755 | 100 | Minus |
CG31038-PE | 2193 | CG31038-RE | 1440..2190 | 769..19 | 3755 | 100 | Minus |
CG31038-PB | 1818 | CG31038-RB | 1440..1785 | 769..424 | 1730 | 100 | Minus |
CG31038-PD | 1818 | CG31038-RD | 1440..1785 | 769..424 | 1730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-RG | 2369 | CG31038-RG | 933..1726 | 812..19 | 3940 | 99.7 | Minus |
CG31038-RC | 2039 | CG31038-RC | 603..1396 | 812..19 | 3940 | 99.7 | Minus |
CG31038-RH | 2015 | CG31038-RH | 622..1372 | 769..19 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29902183..29902588 | 424..19 | 2030 | 100 | Minus |
3R | 32079331 | 3R | 29897300..29897645 | 769..424 | 1730 | 100 | Minus |
3R | 32079331 | 3R | 29897187..29897229 | 812..770 | 185 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:58:23 has no hits.
BO18258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:32 Download gff for
BO18258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-PC | 530..1326 | 16..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:42 Download gff for
BO18258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 603..1403 | 11..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:41 Download gff for
BO18258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 603..1403 | 11..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:41 Download gff for
BO18258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29897187..29897229 | 770..812 | 95 | -> | Minus |
3R | 29897300..29897645 | 424..769 | 100 | -> | Minus |
3R | 29902184..29902595 | 11..423 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:42 Download gff for
BO18258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25722909..25722951 | 770..812 | 95 | -> | Minus |
arm_3R | 25723022..25723367 | 424..769 | 100 | -> | Minus |
arm_3R | 25727906..25728317 | 11..423 | 99 | | Minus |
BO18258.5prime Sequence
806 bp (743 high quality bases) assembled on 2006-10-13
> BO18258.5prime
GAAGTTATCAGTCGACATGTTCATTTTTCCCATACTGTTTGTTCAAATCG
TGATTTCTAATGTCATAAGGAGTCTCAAGCGCCGTCTCGCAAAGCCGCTG
AAAATGTCCGAGGACCTGGACGAGCTCTTCCTGACGCCCATTCCGGCGCC
CTCGGCCGTGGAGCTGCAGCAGTGCATACTGTTCGGCTTCCGGCGCCGCC
TTCATCCCGCCCAGATATTCGAGGAGTGCCGCAACGCCTTTGGGCCCTTC
TGCCCCAGTGCGCAGTACGTGGCGAAGTGGTACCAGCGGTTCCAGGACGG
CTTCTTCAATCTGGACGAGAAGGACGACGAGGAGCTGAGGATCGGGCATG
GCGGCACGCCCACCACCTGCAGTGATTACGATGATGACAGTGATTGCGGG
GAGGCGACCGTTCTGCCCCTGATCCTAAGTGAAATGATCCAACGCAGTGA
GGAGGATGACGATGATGATGGTACTGATGGTTTTGAGAAGGAGAGTGATG
ATGGTCTAGATGGTCATGTGATTGGTTATTGGCAGGGTTATGGCTATTTG
GGTGGCAAGCAAAGGTATAGTTGGGCTGGAACTAAACTTGGAAACTCGGC
TTGCGAGCTGCCCCCGCTGCCGAAATCTCTCATCGGCTTCAACAAGTTAC
TGTGCTCCGATTCGGGACTCCTGAGTGATGTGGAAGGAAACAATAACAGC
AGCGATGGCAGCCGAAAACCAAACGACAATCTTGCTGTGGAGACACAGGA
TACCAAGGAGCATGCCACCGATAAGTCACTGCCCTCCTCGCCGAACGGAA
ACACAT
BO18258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-PC | 1326 | CG31038-RC | 1..790 | 17..806 | 3950 | 100 | Plus |
CG31038-PF | 2193 | CG31038-RF | 1440..1657 | 589..806 | 1090 | 100 | Plus |
CG31038-PA | 2193 | CG31038-RA | 1440..1657 | 589..806 | 1090 | 100 | Plus |
CG31038-PB | 1818 | CG31038-RB | 1440..1657 | 589..806 | 1090 | 100 | Plus |
CG31038-PD | 1818 | CG31038-RD | 1440..1657 | 589..806 | 1090 | 100 | Plus |
CG31038-PE | 2193 | CG31038-RE | 1440..1657 | 589..806 | 1090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-RC | 2039 | CG31038-RC | 74..863 | 17..806 | 3950 | 100 | Plus |
CG31038-RG | 2369 | CG31038-RG | 443..1193 | 56..806 | 3755 | 100 | Plus |
CG31038-RH | 2015 | CG31038-RH | 74..839 | 17..806 | 3580 | 97 | Plus |
CG31038-RG | 2369 | CG31038-RG | 74..113 | 17..56 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29896698..29897229 | 57..588 | 2660 | 100 | Plus |
3R | 32079331 | 3R | 29897300..29897517 | 589..806 | 1090 | 100 | Plus |
3R | 32079331 | 3R | 29895054..29895093 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:10:06 has no hits.
BO18258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:32 Download gff for
BO18258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-PC | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:16 Download gff for
BO18258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 66..863 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:48 Download gff for
BO18258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 66..863 | 9..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:48 Download gff for
BO18258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29895046..29895093 | 9..56 | 91 | -> | Plus |
3R | 29896698..29897229 | 57..588 | 100 | -> | Plus |
3R | 29897300..29897517 | 589..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:16 Download gff for
BO18258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25720768..25720815 | 9..56 | 91 | -> | Plus |
arm_3R | 25722420..25722951 | 57..588 | 100 | -> | Plus |
arm_3R | 25723022..25723239 | 589..806 | 100 | | Plus |
BO18258.complete Sequence
1357 bp assembled on 2006-10-11
GenBank Submission: FJ634363
> BO18258.complete
GAAGTTATCAGTCGACATGTTCATTTTTCCCATACTGTTTGTTCAAATCG
TGATTTCTAATGTCATAAGGAGTCTCAAGCGCCGTCTCGCAAAGCCGCTG
AAAATGTCCGAGGACCTGGACGAGCTCTTCCTGACGCCCATTCCGGCGCC
CTCGGCCGTGGAGCTGCAGCAGTGCATACTGTTCGGCTTCCGGCGCCGCC
TTCATCCCGCCCAGATATTCGAGGAGTGCCGCAACGCCTTTGGGCCCTTC
TGCCCCAGTGCGCAGTACGTGGCGAAGTGGTACCAGCGGTTCCAGGACGG
CTTCTTCAATCTGGACGAGAAGGACGACGAGGAGCTGAGGATCGGGCATG
GCGGCACGCCCACCACCTGCAGTGATTACGATGATGACAGTGATTGCGGG
GAGGCGACCGTTCTGCCCCTGATCCTAAGTGAAATGATCCAACGCAGTGA
GGAGGATGACGATGATGATGGTACTGATGGTTTTGAGAAGGAGAGTGATG
ATGGTCTAGATGGTCATGTGATTGGTTATTGGCAGGGTTATGGCTATTTG
GGTGGCAAGCAAAGGTATAGTTGGGCTGGAACTAAACTTGGAAACTCGGC
TTGCGAGCTGCCCCCGCTGCCGAAATCTCTCATCGGCTTCAACAAGTTAC
TGTGCTCCGATTCGGGACTCCTGAGTGATGTGGAAGGAAACAATAACAGC
AGCGATGGCAGCCGAAAACCAAACGACAATCTTGCTGTGGAGACACAGGA
TACCAAGGAGCATGCCACCGATAAGTCACTGCCCTCCTCGCCGAACGGAA
ACACATCCATACCACCAATGCTGGTGGCCAAATCCGAGGCCAAGTCCCCC
AGCTTATCCGCCAAAGGAAACCCCCAGGCGGTCGAGGCGGGCAGCACTCT
GGATGCCCAGATTGCGACGCTGCGGAAGGAAATGAACGGACTGCGTCAAC
TAGATCTCTCGTTGCTGTCACAACTGTGGGTGCTTAACGAATCGATCCAA
GAGTTCCGCGCCCTGATCGAAGATCAGGAGAACGAGGATGAGGACGACGA
GGTGGAGGTGGAGGTGGGAAACGAGCTGGACGAGGAGGGCAACAGCCGGG
TGTCCTCGTCCATCGAGTCGGTGCGATTGGAGGGCGGTGCTGATGGCACG
TCGAAGCATCTGGGAACCATACCAAAGGTCATAACGACGCAGCCAAAGGT
GCTGAGGGACTCACTGGCCACGGCCAGCAAGGACCAGAAGCCGGTGCCCA
GGATGCGGAGTGCCCCGCCACCGCCACCTCCCGCCGTGCTGCAATCCTTG
TCCCTGGAGCGAAAACCGCCGGCTCCGTCACGACCCACAGCAAGCTTTCT
AGACCAT
BO18258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-RC | 1326 | CG31038-PC | 1..1323 | 17..1339 | 6615 | 100 | Plus |
CG31038-RG | 1239 | CG31038-PG | 1..1236 | 104..1339 | 6180 | 100 | Plus |
CG31038-RH | 1302 | CG31038-PH | 549..1299 | 589..1339 | 3755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-RC | 2039 | CG31038-RC | 74..1396 | 17..1339 | 6615 | 100 | Plus |
CG31038-RG | 2369 | CG31038-RG | 443..1726 | 56..1339 | 6420 | 100 | Plus |
CG31038-RH | 2015 | CG31038-RH | 622..1372 | 589..1339 | 3755 | 100 | Plus |
CG31038-RG | 2369 | CG31038-RG | 74..113 | 17..56 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29896698..29897229 | 57..588 | 2660 | 100 | Plus |
3R | 32079331 | 3R | 29902183..29902588 | 934..1339 | 2030 | 100 | Plus |
3R | 32079331 | 3R | 29897300..29897645 | 589..934 | 1730 | 100 | Plus |
3R | 32079331 | 3R | 29895054..29895093 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:12 has no hits.
BO18258.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:21 Download gff for
BO18258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 1..1326 | 17..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:31 Download gff for
BO18258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 64..1401 | 9..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:26 Download gff for
BO18258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 79..1396 | 22..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:21 Download gff for
BO18258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 64..1401 | 9..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:42 Download gff for
BO18258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 79..1396 | 22..1341 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:42 Download gff for
BO18258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29902184..29902588 | 935..1341 | 99 | | Plus |
3R | 29895059..29895093 | 22..56 | 100 | -> | Plus |
3R | 29896698..29897229 | 57..588 | 100 | -> | Plus |
3R | 29897300..29897645 | 589..934 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:26 Download gff for
BO18258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25727906..25728310 | 935..1341 | 99 | | Plus |
arm_3R | 25720781..25720815 | 22..56 | 100 | -> | Plus |
arm_3R | 25722420..25722951 | 57..588 | 100 | -> | Plus |
arm_3R | 25723022..25723367 | 589..934 | 100 | -> | Plus |
BO18258.pep Sequence
Translation from 16 to 1357
> BO18258.pep
MFIFPILFVQIVISNVIRSLKRRLAKPLKMSEDLDELFLTPIPAPSAVEL
QQCILFGFRRRLHPAQIFEECRNAFGPFCPSAQYVAKWYQRFQDGFFNLD
EKDDEELRIGHGGTPTTCSDYDDDSDCGEATVLPLILSEMIQRSEEDDDD
DGTDGFEKESDDGLDGHVIGYWQGYGYLGGKQRYSWAGTKLGNSACELPP
LPKSLIGFNKLLCSDSGLLSDVEGNNNSSDGSRKPNDNLAVETQDTKEHA
TDKSLPSSPNGNTSIPPMLVAKSEAKSPSLSAKGNPQAVEAGSTLDAQIA
TLRKEMNGLRQLDLSLLSQLWVLNESIQEFRALIEDQENEDEDDEVEVEV
GNELDEEGNSRVSSSIESVRLEGGADGTSKHLGTIPKVITTQPKVLRDSL
ATASKDQKPVPRMRSAPPPPPPAVLQSLSLERKPPAPSRPTASFLDH
BO18258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-PC | 441 | CG31038-PC | 1..441 | 1..441 | 2298 | 100 | Plus |
CG31038-PH | 433 | CG31038-PH | 1..433 | 1..441 | 2227 | 98 | Plus |
CG31038-PG | 412 | CG31038-PG | 1..412 | 30..441 | 2160 | 100 | Plus |
CG31038-PE | 730 | CG31038-PE | 479..730 | 190..441 | 1269 | 99.6 | Plus |
CG31038-PA | 730 | CG31038-PA | 479..730 | 190..441 | 1269 | 99.6 | Plus |