Clone Sequence Records
BO18261.complete Sequence
1420 bp assembled on 2008-11-10
GenBank Submission: KX798610
> BO18261.complete
GAAGTTATCAGTCGACATGGCCATCATAACGAGTGCCTTCTTCTCGTCGA
TGAGCTTCGCCGGCCTGTTCTCCGGCTCCCTGTTCCAGCGCTTTGGAATG
CGGCAGGTGGGCGTCACTGGCGGCATCTTGTACTTCCTGGGCACTGGAAT
GCAGTTGTTCGCCACCTCCACGCTACACCTGATCATGGCCTTTAGCGTCG
TTCAGGGATTCGCCTTCGGGCTGATGGTGCCCACCTGCTATACGACATTC
AACCATTATTTTGTCAAGAACCGCGTGATGTGGATGAGCTTTGCCCAGAC
ACTGATTGGCTTGGGCTCCATGCTATATCCGATTGTCATGCAGAAGTTGA
TGTCATGGTACGGCTTCCGCGGTTGCCTGCTCATCCTCACGGGACTGAAT
GCTCATGCGGTGTTCGGGATGCTGGTCATGCACCCAGTGGAGTGGCACAT
GCGTCGCGTGCCCATCCAGCCCGAGGAGCAGGAGGAACTCAAGGAGTTGA
GCCCAACGGTGGTGATTAGAGTGCAGCCGGAAACACCGCTTAAGGCTACC
AGAGAGGAGCCCAACTTTCATACCGCTGATCCAGGAGCGCGAAAGCTCTC
CCACGCCGAGGAGCAAATGCTGAAGGTTCTGTCCAGTCGGGCCTCGAGCA
TCACCAGCCTGGGCAATTGGTCCGGACCCGTGGTGGTCAGTGACGCCTCG
CCCCAGATGATGCACAGCCTGCAGACCTCACGGCGTCCGAGCACGATTGC
CGGTGCATCAGGTGCAGTAGCTCCAGCCCACGCTACCAAAAAGAGCTGGG
TGCGCACCATCGTCGACTTCCTCGATCTCACGCTGCTGAAGAAGCCCATT
TTCGTTAACATCGTGCTGGGCATCACCTTTGCCCTCTACTCCGACATCAC
CTTCTTCACCATGCAGCCAGTCTACCTATTTGAGCTGGGATACAGCAGGC
CCGACACGGCCACCATTATCGCCATTGGAGCGGCCGCAGACTTGGCATCT
CGTATTTTCCTGGCCATCACCGCCGTGTGCATCCAGGTTCCTTCGAGATA
CATTTATTTGGCCGGAGCCGTTTTCACCGTCTTTGCGAGATTCGGTAGGC
GAACCCTTCCTTGGGCTCCAAGAACTCCCTTCCTCCCACTAATCTCACTC
ATTTTCCCACAGCCTTCAACGGAATCACACAGTTTGTGGGCATGGCCTGC
ATCACGGCGGTCATTGGATTTCTGCGCACCTGGCTCCACGTTCCACTGCC
TCTGGTCTTTGCCGACTACTTGCCCAAGGAAAGGTTCGCCACTGGCTATG
GCCTTTTCATGTTCATCCAAGGCAATGCCATGTTCCTCATCGGTCCCATT
GTTGGGTTTATTCGGGACAAGACCAGGGATTACATTTTCGTCTTTCACAT
CCGCAAGCTTTCTAGACCAT
BO18261.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RC | 1692 | CG8028-PC | 231..1309 | 16..1094 | 5395 | 100 | Plus |
| CG8028-RD | 1461 | CG8028-PD | 1..1078 | 17..1094 | 5390 | 100 | Plus |
| CG8028-RC | 1692 | CG8028-PC | 1309..1549 | 1162..1402 | 1205 | 100 | Plus |
| CG8028-RD | 1461 | CG8028-PD | 1078..1318 | 1162..1402 | 1205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RD | 1947 | CG8028-RD | 443..1521 | 16..1094 | 5395 | 100 | Plus |
| CG8028-RC | 1846 | CG8028-RC | 258..1336 | 16..1094 | 5395 | 100 | Plus |
| CG8028-RD | 1947 | CG8028-RD | 1521..1761 | 1162..1402 | 1205 | 100 | Plus |
| CG8028-RC | 1846 | CG8028-RC | 1336..1576 | 1162..1402 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19278974..19279907 | 949..16 | 4670 | 100 | Minus |
| X | 23542271 | X | 19277642..19277978 | 1285..949 | 1685 | 100 | Minus |
| X | 23542271 | X | 19277446..19277567 | 1402..1281 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:55:03 has no hits.
BO18261.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:38 Download gff for
BO18261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RB | 226..1620 | 10..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:28 Download gff for
BO18261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 259..1336 | 17..1094 | 100 | == | Plus |
| CG8028-RC | 1337..1576 | 1163..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:26:32 Download gff for
BO18261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RB | 232..1617 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:30 Download gff for
BO18261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 259..1336 | 17..1094 | 100 | == | Plus |
| CG8028-RC | 1337..1576 | 1163..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:30 Download gff for
BO18261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19277444..19277564 | 1284..1404 | 98 | <- | Minus |
| X | 19277644..19277977 | 950..1283 | 100 | <- | Minus |
| X | 19278974..19279906 | 17..949 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:28 Download gff for
BO18261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19171477..19171597 | 1284..1404 | 98 | <- | Minus |
| arm_X | 19171677..19172010 | 950..1283 | 100 | <- | Minus |
| arm_X | 19173007..19173939 | 17..949 | 100 | | Minus |
BO18261.3prime Sequence
634 bp (582 high quality bases) assembled on 2006-10-13
> BO18261.3prime
ATGGTCTAGAAAGCTTGCGGATGTGAAAGACGAAAATGTAATCCCTGGTC
TTGTCCCGAATAAACCCAACAATGGGACCGATGAGGAACATGGCATTGCC
TTGGATGAACATGAAAAGGCCATAGCCAGTGGCGAACCTTTCCTTGGGCA
AGTAGTCGGCAAAGACCAGAGGCAGTGGAACGTGGAGCCAGGTGCGCAGA
AATCCAATGACCGCCGTGATGCAGGCCATGCCCACAAACTGTGTGATTCC
GTTGAAGGCTGTGGGAAAATGAGTGAGATTAGTGGGAGGAAGGGAGTTCT
TGGAGCCCAAGGAAGGGTTCGCCTACCGAATCTCGCAAAGACGGTGAAAA
CGGCTCCGGCCAAATAAATGTATCTCGAAGGAACCTGGATGCACACGGCG
GTGATGGCCAGGAAAATACGAGATGCCAAGTCTGCGGCCGCTCCAATGGC
GATAATGGTGGCCGTGTCGGGCCTGCTGTATCCCAGCTCAAATAGGTAGA
CTGGCTGCATGGTGAAGAAGGTGATGTCGGAGTAGAGGGCAAAGGTGATG
CCCAGCACGATGTTAACGAAAATGGGCTTCTTCAGCAGCGTGAGATCGAG
GAAGTCGACGATGGTGCGCACCCCAGCTCTTTTT
BO18261.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-PA | 1389 | CG8028-RA | 772..1386 | 634..19 | 3040 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RD | 1947 | CG8028-RD | 1215..1521 | 634..327 | 1515 | 99.7 | Minus |
| CG8028-RC | 1846 | CG8028-RC | 1030..1336 | 634..327 | 1515 | 99.7 | Minus |
| CG8028-RD | 1947 | CG8028-RD | 1521..1761 | 259..19 | 1205 | 100 | Minus |
| CG8028-RC | 1846 | CG8028-RC | 1336..1576 | 259..19 | 1205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19277642..19277978 | 136..472 | 1685 | 100 | Plus |
| X | 23542271 | X | 19278974..19279135 | 472..634 | 765 | 99.4 | Plus |
| X | 23542271 | X | 19277446..19277567 | 19..140 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:56:37 has no hits.
BO18261.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:36 Download gff for
BO18261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-PA | 772..1389 | 15..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:04:20 Download gff for
BO18261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 1030..1336 | 327..634 | 99 | == | Minus |
| CG8028-RC | 1337..1579 | 15..258 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:23 Download gff for
BO18261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 1030..1336 | 327..634 | 99 | == | Minus |
| CG8028-RC | 1337..1579 | 15..258 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:23 Download gff for
BO18261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19277442..19277564 | 15..137 | 98 | <- | Plus |
| X | 19277644..19277977 | 138..471 | 100 | <- | Plus |
| X | 19278974..19279135 | 472..634 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:04:20 Download gff for
BO18261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19171475..19171597 | 15..137 | 98 | <- | Plus |
| arm_X | 19171677..19172010 | 138..471 | 100 | <- | Plus |
| arm_X | 19173007..19173168 | 472..634 | 99 | | Plus |
BO18261.5prime Sequence
792 bp (715 high quality bases) assembled on 2006-10-13
> BO18261.5prime
GAAGTTATCAGTCGACATGGCCATCATAACGAGTGCCTTCTTCTCGTCGA
TGAGCTTCGCCGGCCTGTTCTCCGGCTCCCTGTTCCAGCGCTTTGGAATG
CGGCAGGTGGGCGTCACTGGCGGCATCTTGTACTTCCTGGGCACTGGAAT
GCAGTTGTTCGCCACCTCCACGCTACACCTGATCATGGCCTTTAGCGTCG
TTCAGGGATTCGCCTTCGGGCTGATGGTGCCCACCTGCTATACGACATTC
AACCATTATTTTGTCAAGAACCGCGTGATGTGGATGAGCTTTGCCCAGAC
ACTGATTGGCTTGGGCTCCATGCTATATCCGATTGTCATGCAGAAGTTGA
TGTCATGGTACGGCTTCCGCGGTTGCCTGCTCATCCTCACGGGACTGAAT
GCTCATGCGGTGTTCGGGATGCTGGTCATGCACCCAGTGGAGTGGCACAT
GCGTCGCGTGCCCATCCAGCCCGAGGAGCAGGAGGAACTCAAGGAGTTGA
GCCCAACGGTGGTGATTAGAGTGCAGCCGGAAACACCGCTTAAGGCTACC
AGAGAGGAGCCCAACTTTCATACCGCTGATCCAGGAGCGCGAAAGCTCTC
CCACGCCGAGGAGCAAATGCTGAAGGTTCTGTCCAGTCGGGCCTCGAGCA
TCACCAGCCTGGGCAATTGGTCCGGACCCGTGGTGGTCAGTGACGCCTCG
CCCCAGATGATGCACAGCCTGCAGACCTCACGGCGTCCGAGCACGATTGC
CGGTGCATCAGGTGCAGTAGCTCCAGCCCACGCTACCAAAAA
BO18261.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-PA | 1389 | CG8028-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RD | 1947 | CG8028-RD | 443..1219 | 16..792 | 3885 | 100 | Plus |
| CG8028-RC | 1846 | CG8028-RC | 258..1034 | 16..792 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19279131..19279907 | 792..16 | 3885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:13:31 has no hits.
BO18261.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:36 Download gff for
BO18261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:48:50 Download gff for
BO18261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 253..1029 | 10..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:08 Download gff for
BO18261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 253..1029 | 10..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:08 Download gff for
BO18261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19279136..19279912 | 10..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:48:50 Download gff for
BO18261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19173169..19173945 | 10..787 | 99 | | Minus |
BO18261.pep Sequence
Translation from 16 to 1420
> BO18261.pep
MAIITSAFFSSMSFAGLFSGSLFQRFGMRQVGVTGGILYFLGTGMQLFAT
STLHLIMAFSVVQGFAFGLMVPTCYTTFNHYFVKNRVMWMSFAQTLIGLG
SMLYPIVMQKLMSWYGFRGCLLILTGLNAHAVFGMLVMHPVEWHMRRVPI
QPEEQEELKELSPTVVIRVQPETPLKATREEPNFHTADPGARKLSHAEEQ
MLKVLSSRASSITSLGNWSGPVVVSDASPQMMHSLQTSRRPSTIAGASGA
VAPAHATKKSWVRTIVDFLDLTLLKKPIFVNIVLGITFALYSDITFFTMQ
PVYLFELGYSRPDTATIIAIGAAADLASRIFLAITAVCIQVPSRYIYLAG
AVFTVFARFGRRTLPWAPRTPFLPLISLIFPQPSTESHSLWAWPASRRSL
DFCAPGSTFHCLWSLPTTCPRKGSPLAMAFSCSSKAMPCSSSVPLLGLFG
TRPGITFSSFTSASFLDH
BO18261.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-PD | 486 | CG8028-PD | 1..359 | 1..359 | 1834 | 100 | Plus |
| CG8028-PC | 563 | CG8028-PC | 78..436 | 1..359 | 1834 | 100 | Plus |
| CG8051-PB | 616 | CG8051-PB | 136..496 | 13..350 | 278 | 24.9 | Plus |
| CG8051-PA | 616 | CG8051-PA | 136..496 | 13..350 | 278 | 24.9 | Plus |
| CG8034-PA | 647 | CG8034-PA | 56..200 | 2..146 | 256 | 33.8 | Plus |
