Clone Sequence Records
BO18262.3prime Sequence
308 bp (308 high quality bases) assembled on 2006-10-13
> BO18262.3prime
ATGGTCTAGAAAGCTTGCGTCGTCCGAGGGCTTCAGGGTCTTCTTGTTCT
CTATAACCAGTTTGTCAGCGGAATACAGGTGGCCGATGATTACCTGGCGA
CGTATCAGCTCCAGATTCTGTTGGCCCTCGGCCATTTGGCGATCGATCTC
CGCGAAGTCCCTGGTGCTCCTGTTGGCGCGGAATGTGTCGCGTATTTTTC
GGGCAGCGTACATTCTGAAGTTGTACGAGGGCAGCTTCTCCGATTCGCGC
AGGAGATTCCTGTATAACGTGATCGCCTGGCGACGGGTCGACATGTCGAC
TGATAACT
BO18262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3717-PA | 279 | bcn92-RA | 1..276 | 294..19 | 1380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-RA | 748 | CG3717-RA | 167..442 | 294..19 | 1380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2149219..2149346 | 92..219 | 640 | 100 | Plus |
X | 23542271 | X | 2149402..2149481 | 215..294 | 400 | 100 | Plus |
X | 23542271 | X | 2148769..2148846 | 19..96 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:07:30 has no hits.
BO18262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:37 Download gff for
BO18262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3717-PA | 1..279 | 15..294 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:34 Download gff for
BO18262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 163..446 | 14..302 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:09 Download gff for
BO18262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 163..446 | 14..302 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:09 Download gff for
BO18262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2148765..2148843 | 14..93 | 97 | <- | Plus |
X | 2149221..2149341 | 94..214 | 100 | <- | Plus |
X | 2149402..2149485 | 215..302 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:34 Download gff for
BO18262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2042798..2042876 | 14..93 | 97 | <- | Plus |
arm_X | 2043254..2043374 | 94..214 | 100 | <- | Plus |
arm_X | 2043435..2043518 | 215..302 | 95 | | Plus |
BO18262.5prime Sequence
308 bp (308 high quality bases) assembled on 2006-10-13
> BO18262.5prime
GAAGTTATCAGTCGACATGTCGACCCGTCGCCAGGCGATCACGTTATACA
GGAATCTCCTGCGCGAATCGGAGAAGCTGCCCTCGTACAACTTCAGAATG
TACGCTGCCCGAAAAATACGCGACACATTCCGCGCCAACAGGAGCACCAG
GGACTTCGCGGAGATCGATCGCCAAATGGCCGAGGGCCAACAGAATCTGG
AGCTGATACGTCGCCAGGTAATCATCGGCCACCTGTATTCCGCTGACAAA
CTGGTTATAGAGAACAAGAAGACCCTGAAGCCCTCGGACGACGCAAGCTT
TCTAGACC
BO18262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3717-PA | 279 | bcn92-RA | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-RA | 748 | CG3717-RA | 167..442 | 17..292 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2149219..2149346 | 219..92 | 640 | 100 | Minus |
X | 23542271 | X | 2149402..2149481 | 96..17 | 400 | 100 | Minus |
X | 23542271 | X | 2148769..2148846 | 292..215 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:07:36 has no hits.
BO18262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:38 Download gff for
BO18262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3717-PA | 1..279 | 17..296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:36 Download gff for
BO18262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 163..446 | 9..297 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:22 Download gff for
BO18262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 163..446 | 9..297 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:22 Download gff for
BO18262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2149221..2149341 | 97..217 | 100 | <- | Minus |
X | 2149402..2149485 | 9..96 | 95 | | Minus |
X | 2148765..2148843 | 218..297 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:36 Download gff for
BO18262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2042798..2042876 | 218..297 | 97 | <- | Minus |
arm_X | 2043254..2043374 | 97..217 | 100 | <- | Minus |
arm_X | 2043435..2043518 | 9..96 | 95 | | Minus |
BO18262.complete Sequence
310 bp assembled on 2006-10-11
GenBank Submission: FJ634364
> BO18262.complete
GAAGTTATCAGTCGACATGTCGACCCGTCGCCAGGCGATCACGTTATACA
GGAATCTCCTGCGCGAATCGGAGAAGCTGCCCTCGTACAACTTCAGAATG
TACGCTGCCCGAAAAATACGCGACACATTCCGCGCCAACAGGAGCACCAG
GGACTTCGCGGAGATCGATCGCCAAATGGCCGAGGGCCAACAGAATCTGG
AGCTGATACGTCGCCAGGTAATCATCGGCCACCTGTATTCCGCTGACAAA
CTGGTTATAGAGAACAAGAAGACCCTGAAGCCCTCGGACGACGCAAGCTT
TCTAGACCAT
BO18262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-RA | 279 | CG3717-PA | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-RA | 748 | CG3717-RA | 167..442 | 17..292 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2149219..2149346 | 219..92 | 640 | 100 | Minus |
X | 23542271 | X | 2149402..2149481 | 96..17 | 400 | 100 | Minus |
X | 23542271 | X | 2148769..2148846 | 292..215 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:43:23 has no hits.
BO18262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:05 Download gff for
BO18262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 1..279 | 17..296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:18 Download gff for
BO18262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 116..399 | 9..297 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:52 Download gff for
BO18262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 167..442 | 17..294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:05 Download gff for
BO18262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 116..399 | 9..297 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:14 Download gff for
BO18262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bcn92-RA | 167..442 | 17..294 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:14 Download gff for
BO18262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2149221..2149341 | 97..217 | 100 | <- | Minus |
X | 2149402..2149481 | 17..96 | 100 | | Minus |
X | 2148767..2148843 | 218..294 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:52 Download gff for
BO18262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2043435..2043514 | 17..96 | 100 | | Minus |
arm_X | 2043254..2043374 | 97..217 | 100 | <- | Minus |
arm_X | 2042800..2042876 | 218..294 | 97 | <- | Minus |
BO18262.pep Sequence
Translation from 16 to 310
> BO18262.pep
MSTRRQAITLYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEI
DRQMAEGQQNLELIRRQVIIGHLYSADKLVIENKKTLKPSDDASFLDH
BO18262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bcn92-PA | 92 | CG3717-PA | 1..92 | 1..92 | 460 | 100 | Plus |