Clone Sequence Records
BO18263.3prime Sequence
749 bp (749 high quality bases) assembled on 2006-10-13
> BO18263.3prime
ATGGTCTAGAAAGCTTGCATTGCGAGACAATCCGATAATGGTCAGTATGT
ACATGAAGATGTTAATAATGTCCAGGTAGAGGTTTAGAGCGGCGAAGATG
TATTCCTCAGGACTGATGGAGTACTTATGATTACCACCCAGCATCAACTG
GGTATCGTACACCAAGTAAACGGAGAAGAGCAATGCTCCCAAGGAGGCAT
AGACCAGTCCGATCACCTTGCCCGGTATGAAGATAGCGATTATACCAAAA
ATGATGAAGACCACCAGACAGGCCACCAACACTCCTCCGCACATCGTAAA
ATCGTATTTGGTCTGCAGGGCAAACAGGGTGAGTCCCAGGGCCACCGCGG
CCGTAATTCCCACTGCCATCAGGACCTCATCAGCCTCAAACTGTCCGGCG
ACCATACCCAGAAGGAACGACTCCGCCACGGTGAACAGGAAAAGAAAGAT
GAAGTTAAGAGGCGTCTTACGGCGTACACTTTCGCAGCAGGCCATACAGA
TCATGGTCACGATAAGAACGGCCAAGGCTATCCAAAACAGTGCCGGATTT
TTTTGCACCCATTCCTGCGAAGCTTTCGAGAACGTAAATACGCTAACAAA
ACCGAAAGTGATCAGCAATTGGCACATCAATATCAAGTAGACCTTTCGAA
TAAATCCCTTCCGGATGCTCTGGTCATCGAAGGCGAAGCTCTTGTCCGCT
TCCGCATCGTACTGAAAATGATTGTCGCTGCTCATGTCGACTGATAACT
BO18263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-PA | 720 | CG3814-RA | 1..717 | 735..19 | 3585 | 100 | Minus |
CG3814-PB | 735 | CG3814-RB | 43..732 | 708..19 | 3450 | 100 | Minus |
CG3798-PB | 942 | Nmda1-RB | 835..917 | 123..41 | 165 | 87.9 | Minus |
CG3798-PA | 942 | Nmda1-RA | 835..917 | 123..41 | 165 | 87.9 | Minus |
CG3798-PF | 951 | Nmda1-RF | 844..926 | 123..41 | 165 | 87.9 | Minus |
CG3798-PD | 975 | Nmda1-RD | 868..950 | 123..41 | 165 | 87.9 | Minus |
CG3798-PC | 975 | Nmda1-RC | 868..950 | 123..41 | 165 | 87.9 | Minus |
CG3798-PE | 975 | Nmda1-RE | 868..950 | 123..41 | 165 | 87.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-RD | 933 | CG3814-RD | 104..821 | 736..19 | 3590 | 100 | Minus |
CG3814-RA | 1073 | CG3814-RA | 244..961 | 736..19 | 3590 | 100 | Minus |
CG3814-RC | 1011 | CG3814-RC | 210..899 | 708..19 | 3450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12875276..12875780 | 19..523 | 2525 | 100 | Plus |
2R | 25286936 | 2R | 12875841..12875944 | 522..625 | 520 | 100 | Plus |
2R | 25286936 | 2R | 12876101..12876184 | 625..708 | 420 | 100 | Plus |
2R | 25286936 | 2R | 12877671..12878016 | 32..377 | 410 | 74.6 | Plus |
3R | 32079331 | 3R | 14152993..14153147 | 47..201 | 295 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:30:30 has no hits.
BO18263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:38 Download gff for
BO18263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-PA | 1..720 | 18..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:19 Download gff for
BO18263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 244..961 | 19..736 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:02 Download gff for
BO18263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 244..961 | 19..736 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:02 Download gff for
BO18263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12875276..12875779 | 19..522 | 100 | <- | Plus |
2R | 12875842..12875943 | 523..624 | 100 | <- | Plus |
2R | 12876101..12876183 | 625..707 | 100 | <- | Plus |
2R | 12876262..12876290 | 708..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:19 Download gff for
BO18263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8762781..8763284 | 19..522 | 100 | <- | Plus |
arm_2R | 8763347..8763448 | 523..624 | 100 | <- | Plus |
arm_2R | 8763606..8763688 | 625..707 | 100 | <- | Plus |
arm_2R | 8763767..8763795 | 708..736 | 100 | | Plus |
BO18263.5prime Sequence
749 bp (749 high quality bases) assembled on 2006-10-13
> BO18263.5prime
GAAGTTATCAGTCGACATGAGCAGCGACAATCATTTTCAGTACGATGCGG
AAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGCATCCGGAAGGGATTT
ATTCGAAAGGTCTACTTGATATTGATGTGCCAATTGCTGATCACTTTCGG
TTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGCAGGAATGGGTGCAAA
AAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGTGACCATG
ATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAAGACGCCTCTTAACTT
CATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTGGGTATGG
TCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGGAATTACG
GCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCTGCAGACCAAATACGA
TTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTCTTCATCA
TTTTTGGTATAATCGCTATCTTCATACCGGGCAAGGTGATCGGACTGGTC
TATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTACTTGGTGTACGATAC
CCAGTTGATGCTGGGTGGTAATCATAAGTACTCCATCAGTCCTGAGGAAT
ACATCTTCGCCGCTCTAAACCTCTACCTGGACATTATTAACATCTTCATG
TACATACTGACCATTTTCGGATTGTCTCGCAATGCAAGCTTTCTAGACC
BO18263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-PA | 720 | CG3814-RA | 1..717 | 17..733 | 3560 | 99.8 | Plus |
CG3814-PB | 735 | CG3814-RB | 43..732 | 44..733 | 3425 | 99.8 | Plus |
CG3798-PB | 942 | Nmda1-RB | 835..917 | 629..711 | 165 | 87.9 | Plus |
CG3798-PA | 942 | Nmda1-RA | 835..917 | 629..711 | 165 | 87.9 | Plus |
CG3798-PF | 951 | Nmda1-RF | 844..926 | 629..711 | 165 | 87.9 | Plus |
CG3798-PD | 975 | Nmda1-RD | 868..950 | 629..711 | 165 | 87.9 | Plus |
CG3798-PC | 975 | Nmda1-RC | 868..950 | 629..711 | 165 | 87.9 | Plus |
CG3798-PE | 975 | Nmda1-RE | 868..950 | 629..711 | 165 | 87.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-RD | 933 | CG3814-RD | 104..821 | 16..733 | 3575 | 99.9 | Plus |
CG3814-RA | 1073 | CG3814-RA | 244..961 | 16..733 | 3575 | 99.9 | Plus |
CG3814-RC | 1011 | CG3814-RC | 210..899 | 44..733 | 3435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12875276..12875780 | 733..229 | 2510 | 99.8 | Minus |
2R | 25286936 | 2R | 12875841..12875944 | 230..127 | 520 | 100 | Minus |
2R | 25286936 | 2R | 12876101..12876184 | 127..44 | 420 | 100 | Minus |
2R | 25286936 | 2R | 12877680..12878016 | 711..375 | 395 | 74.5 | Minus |
3R | 32079331 | 3R | 14152993..14153147 | 705..551 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:59:10 has no hits.
BO18263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:39 Download gff for
BO18263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-PA | 1..720 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:46 Download gff for
BO18263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 244..961 | 16..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:48 Download gff for
BO18263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 244..961 | 16..733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:48 Download gff for
BO18263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12875276..12875779 | 230..733 | 99 | <- | Minus |
2R | 12875842..12875943 | 128..229 | 100 | <- | Minus |
2R | 12876101..12876183 | 45..127 | 100 | <- | Minus |
2R | 12876262..12876290 | 16..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:46 Download gff for
BO18263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8763606..8763688 | 45..127 | 100 | <- | Minus |
arm_2R | 8763767..8763795 | 16..44 | 100 | | Minus |
arm_2R | 8763347..8763448 | 128..229 | 100 | <- | Minus |
arm_2R | 8762781..8763284 | 230..733 | 99 | <- | Minus |
BO18263.complete Sequence
751 bp assembled on 2006-10-11
GenBank Submission: FJ634365
> BO18263.complete
GAAGTTATCAGTCGACATGAGCAGCGACAATCATTTTCAGTACGATGCGG
AAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGCATCCGGAAGGGATTT
ATTCGAAAGGTCTACTTGATATTGATGTGCCAATTGCTGATCACTTTCGG
TTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGCAGGAATGGGTGCAAA
AAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGTGACCATG
ATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAAGACGCCTCTTAACTT
CATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTGGGTATGG
TCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGGAATTACG
GCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCTGCAGACCAAATACGA
TTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTCTTCATCA
TTTTTGGTATAATCGCTATCTTCATACCGGGCAAGGTGATCGGACTGGTC
TATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTACTTGGTGTACGATAC
CCAGTTGATGCTGGGTGGTAATCATAAGTACTCCATCAGTCCTGAGGAAT
ACATCTTCGCCGCTCTAAACCTCTACCTGGACATTATTAACATCTTCATG
TACATACTGACCATTATCGGATTGTCTCGCAATGCAAGCTTTCTAGACCA
T
BO18263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-RD | 720 | CG3814-PD | 1..717 | 17..733 | 3585 | 100 | Plus |
CG3814-RA | 720 | CG3814-PA | 1..717 | 17..733 | 3585 | 100 | Plus |
CG3814-RB | 735 | CG3814-PB | 43..732 | 44..733 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-RD | 933 | CG3814-RD | 104..821 | 16..733 | 3590 | 100 | Plus |
CG3814-RA | 1073 | CG3814-RA | 244..961 | 16..733 | 3590 | 100 | Plus |
CG3814-RC | 1011 | CG3814-RC | 210..899 | 44..733 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12875276..12875780 | 733..229 | 2525 | 100 | Minus |
2R | 25286936 | 2R | 12875841..12875944 | 230..127 | 520 | 100 | Minus |
2R | 25286936 | 2R | 12876101..12876184 | 127..44 | 420 | 100 | Minus |
2R | 25286936 | 2R | 12877671..12878016 | 720..375 | 410 | 74.6 | Minus |
3R | 32079331 | 3R | 14152993..14153147 | 705..551 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:51:34 has no hits.
BO18263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:22 Download gff for
BO18263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 1..720 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:33 Download gff for
BO18263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 378..1095 | 16..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:55 Download gff for
BO18263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 245..961 | 17..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:22 Download gff for
BO18263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 378..1095 | 16..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:19 Download gff for
BO18263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3814-RA | 245..961 | 17..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:19 Download gff for
BO18263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12875274..12875779 | 230..735 | 99 | <- | Minus |
2R | 12875842..12875943 | 128..229 | 100 | <- | Minus |
2R | 12876101..12876183 | 45..127 | 100 | <- | Minus |
2R | 12876262..12876289 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:55 Download gff for
BO18263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8762779..8763284 | 230..735 | 99 | <- | Minus |
arm_2R | 8763347..8763448 | 128..229 | 100 | <- | Minus |
arm_2R | 8763606..8763688 | 45..127 | 100 | <- | Minus |
arm_2R | 8763767..8763794 | 17..44 | 100 | | Minus |
BO18263.pep Sequence
Translation from 16 to 751
> BO18263.pep
MSSDNHFQYDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVF
TFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNFIFLFL
FTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYDFTMCG
GVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLMLG
GNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRNASFLDH
BO18263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3814-PD | 239 | CG3814-PD | 1..239 | 1..239 | 1208 | 100 | Plus |
CG3814-PA | 239 | CG3814-PA | 1..239 | 1..239 | 1208 | 100 | Plus |
CG3814-PB | 244 | CG3814-PB | 15..244 | 10..239 | 1157 | 100 | Plus |
CG3814-PC | 203 | CG3814-PC | 1..203 | 37..239 | 1023 | 100 | Plus |
Nmda1-PH | 313 | CG3798-PH | 89..313 | 15..239 | 862 | 72.4 | Plus |