Clone BO18263 Report

Search the DGRC for BO18263

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG3814-RA
Protein status:BO18263.pep: validated full length
Sequenced Size:751

Clone Sequence Records

BO18263.3prime Sequence

749 bp (749 high quality bases) assembled on 2006-10-13

> BO18263.3prime
ATGGTCTAGAAAGCTTGCATTGCGAGACAATCCGATAATGGTCAGTATGT
ACATGAAGATGTTAATAATGTCCAGGTAGAGGTTTAGAGCGGCGAAGATG
TATTCCTCAGGACTGATGGAGTACTTATGATTACCACCCAGCATCAACTG
GGTATCGTACACCAAGTAAACGGAGAAGAGCAATGCTCCCAAGGAGGCAT
AGACCAGTCCGATCACCTTGCCCGGTATGAAGATAGCGATTATACCAAAA
ATGATGAAGACCACCAGACAGGCCACCAACACTCCTCCGCACATCGTAAA
ATCGTATTTGGTCTGCAGGGCAAACAGGGTGAGTCCCAGGGCCACCGCGG
CCGTAATTCCCACTGCCATCAGGACCTCATCAGCCTCAAACTGTCCGGCG
ACCATACCCAGAAGGAACGACTCCGCCACGGTGAACAGGAAAAGAAAGAT
GAAGTTAAGAGGCGTCTTACGGCGTACACTTTCGCAGCAGGCCATACAGA
TCATGGTCACGATAAGAACGGCCAAGGCTATCCAAAACAGTGCCGGATTT
TTTTGCACCCATTCCTGCGAAGCTTTCGAGAACGTAAATACGCTAACAAA
ACCGAAAGTGATCAGCAATTGGCACATCAATATCAAGTAGACCTTTCGAA
TAAATCCCTTCCGGATGCTCTGGTCATCGAAGGCGAAGCTCTTGTCCGCT
TCCGCATCGTACTGAAAATGATTGTCGCTGCTCATGTCGACTGATAACT

BO18263.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-PA 720 CG3814-RA 1..717 735..19 3585 100 Minus
CG3814-PB 735 CG3814-RB 43..732 708..19 3450 100 Minus
CG3798-PB 942 Nmda1-RB 835..917 123..41 165 87.9 Minus
CG3798-PA 942 Nmda1-RA 835..917 123..41 165 87.9 Minus
CG3798-PF 951 Nmda1-RF 844..926 123..41 165 87.9 Minus
CG3798-PD 975 Nmda1-RD 868..950 123..41 165 87.9 Minus
CG3798-PC 975 Nmda1-RC 868..950 123..41 165 87.9 Minus
CG3798-PE 975 Nmda1-RE 868..950 123..41 165 87.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-RD 933 CG3814-RD 104..821 736..19 3590 100 Minus
CG3814-RA 1073 CG3814-RA 244..961 736..19 3590 100 Minus
CG3814-RC 1011 CG3814-RC 210..899 708..19 3450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12875276..12875780 19..523 2525 100 Plus
2R 25286936 2R 12875841..12875944 522..625 520 100 Plus
2R 25286936 2R 12876101..12876184 625..708 420 100 Plus
2R 25286936 2R 12877671..12878016 32..377 410 74.6 Plus
3R 32079331 3R 14152993..14153147 47..201 295 79.4 Plus
Blast to na_te.dros performed on 2015-02-11 17:30:30 has no hits.

BO18263.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:38 Download gff for BO18263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-PA 1..720 18..735 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:19 Download gff for BO18263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 244..961 19..736 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:02 Download gff for BO18263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 244..961 19..736 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:02 Download gff for BO18263.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12875276..12875779 19..522 100 <- Plus
2R 12875842..12875943 523..624 100 <- Plus
2R 12876101..12876183 625..707 100 <- Plus
2R 12876262..12876290 708..736 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:19 Download gff for BO18263.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8762781..8763284 19..522 100 <- Plus
arm_2R 8763347..8763448 523..624 100 <- Plus
arm_2R 8763606..8763688 625..707 100 <- Plus
arm_2R 8763767..8763795 708..736 100   Plus

BO18263.5prime Sequence

749 bp (749 high quality bases) assembled on 2006-10-13

> BO18263.5prime
GAAGTTATCAGTCGACATGAGCAGCGACAATCATTTTCAGTACGATGCGG
AAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGCATCCGGAAGGGATTT
ATTCGAAAGGTCTACTTGATATTGATGTGCCAATTGCTGATCACTTTCGG
TTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGCAGGAATGGGTGCAAA
AAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGTGACCATG
ATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAAGACGCCTCTTAACTT
CATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTGGGTATGG
TCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGGAATTACG
GCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCTGCAGACCAAATACGA
TTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTCTTCATCA
TTTTTGGTATAATCGCTATCTTCATACCGGGCAAGGTGATCGGACTGGTC
TATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTACTTGGTGTACGATAC
CCAGTTGATGCTGGGTGGTAATCATAAGTACTCCATCAGTCCTGAGGAAT
ACATCTTCGCCGCTCTAAACCTCTACCTGGACATTATTAACATCTTCATG
TACATACTGACCATTTTCGGATTGTCTCGCAATGCAAGCTTTCTAGACC

BO18263.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-PA 720 CG3814-RA 1..717 17..733 3560 99.8 Plus
CG3814-PB 735 CG3814-RB 43..732 44..733 3425 99.8 Plus
CG3798-PB 942 Nmda1-RB 835..917 629..711 165 87.9 Plus
CG3798-PA 942 Nmda1-RA 835..917 629..711 165 87.9 Plus
CG3798-PF 951 Nmda1-RF 844..926 629..711 165 87.9 Plus
CG3798-PD 975 Nmda1-RD 868..950 629..711 165 87.9 Plus
CG3798-PC 975 Nmda1-RC 868..950 629..711 165 87.9 Plus
CG3798-PE 975 Nmda1-RE 868..950 629..711 165 87.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-RD 933 CG3814-RD 104..821 16..733 3575 99.9 Plus
CG3814-RA 1073 CG3814-RA 244..961 16..733 3575 99.9 Plus
CG3814-RC 1011 CG3814-RC 210..899 44..733 3435 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12875276..12875780 733..229 2510 99.8 Minus
2R 25286936 2R 12875841..12875944 230..127 520 100 Minus
2R 25286936 2R 12876101..12876184 127..44 420 100 Minus
2R 25286936 2R 12877680..12878016 711..375 395 74.5 Minus
3R 32079331 3R 14152993..14153147 705..551 295 79.4 Minus
Blast to na_te.dros performed on 2015-02-02 17:59:10 has no hits.

BO18263.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:39 Download gff for BO18263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-PA 1..720 17..734 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:46 Download gff for BO18263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 244..961 16..733 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:48 Download gff for BO18263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 244..961 16..733 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:48 Download gff for BO18263.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12875276..12875779 230..733 99 <- Minus
2R 12875842..12875943 128..229 100 <- Minus
2R 12876101..12876183 45..127 100 <- Minus
2R 12876262..12876290 16..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:46 Download gff for BO18263.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8763606..8763688 45..127 100 <- Minus
arm_2R 8763767..8763795 16..44 100   Minus
arm_2R 8763347..8763448 128..229 100 <- Minus
arm_2R 8762781..8763284 230..733 99 <- Minus

BO18263.complete Sequence

751 bp assembled on 2006-10-11

GenBank Submission: FJ634365

> BO18263.complete
GAAGTTATCAGTCGACATGAGCAGCGACAATCATTTTCAGTACGATGCGG
AAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGCATCCGGAAGGGATTT
ATTCGAAAGGTCTACTTGATATTGATGTGCCAATTGCTGATCACTTTCGG
TTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGCAGGAATGGGTGCAAA
AAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGTGACCATG
ATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAAGACGCCTCTTAACTT
CATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTGGGTATGG
TCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGGAATTACG
GCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCTGCAGACCAAATACGA
TTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTCTTCATCA
TTTTTGGTATAATCGCTATCTTCATACCGGGCAAGGTGATCGGACTGGTC
TATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTACTTGGTGTACGATAC
CCAGTTGATGCTGGGTGGTAATCATAAGTACTCCATCAGTCCTGAGGAAT
ACATCTTCGCCGCTCTAAACCTCTACCTGGACATTATTAACATCTTCATG
TACATACTGACCATTATCGGATTGTCTCGCAATGCAAGCTTTCTAGACCA
T

BO18263.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-RD 720 CG3814-PD 1..717 17..733 3585 100 Plus
CG3814-RA 720 CG3814-PA 1..717 17..733 3585 100 Plus
CG3814-RB 735 CG3814-PB 43..732 44..733 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-RD 933 CG3814-RD 104..821 16..733 3590 100 Plus
CG3814-RA 1073 CG3814-RA 244..961 16..733 3590 100 Plus
CG3814-RC 1011 CG3814-RC 210..899 44..733 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12875276..12875780 733..229 2525 100 Minus
2R 25286936 2R 12875841..12875944 230..127 520 100 Minus
2R 25286936 2R 12876101..12876184 127..44 420 100 Minus
2R 25286936 2R 12877671..12878016 720..375 410 74.6 Minus
3R 32079331 3R 14152993..14153147 705..551 295 79.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:51:34 has no hits.

BO18263.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:22 Download gff for BO18263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 1..720 17..734 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:33 Download gff for BO18263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 378..1095 16..733 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:55 Download gff for BO18263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 245..961 17..735 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:22 Download gff for BO18263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 378..1095 16..733 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:19 Download gff for BO18263.complete
Subject Subject Range Query Range Percent Splice Strand
CG3814-RA 245..961 17..735 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:19 Download gff for BO18263.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12875274..12875779 230..735 99 <- Minus
2R 12875842..12875943 128..229 100 <- Minus
2R 12876101..12876183 45..127 100 <- Minus
2R 12876262..12876289 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:55 Download gff for BO18263.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8762779..8763284 230..735 99 <- Minus
arm_2R 8763347..8763448 128..229 100 <- Minus
arm_2R 8763606..8763688 45..127 100 <- Minus
arm_2R 8763767..8763794 17..44 100   Minus

BO18263.pep Sequence

Translation from 16 to 751

> BO18263.pep
MSSDNHFQYDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVF
TFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNFIFLFL
FTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYDFTMCG
GVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLMLG
GNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRNASFLDH

BO18263.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3814-PD 239 CG3814-PD 1..239 1..239 1208 100 Plus
CG3814-PA 239 CG3814-PA 1..239 1..239 1208 100 Plus
CG3814-PB 244 CG3814-PB 15..244 10..239 1157 100 Plus
CG3814-PC 203 CG3814-PC 1..203 37..239 1023 100 Plus
Nmda1-PH 313 CG3798-PH 89..313 15..239 862 72.4 Plus