Clone BO18266 Report

Search the DGRC for BO18266

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptgukh-RB
Protein status:BO18266.pep: Imported from assembly
Sequenced Size:1636

Clone Sequence Records

BO18266.complete Sequence

1636 bp assembled on 2009-10-20

GenBank Submission: KX796284

> BO18266.complete
GAAGTTATCAGTCGACATGCCCTTCGTCCAGCGCGTGGTGCAGCCCGTCA
ATGTGGCCCAGGCCACGGCGGCCAGTTTGGGCCACGCATCCGGACGATTC
CACTGCACGCCGGGCAAGTGCCGGAACAACAACTGCATTAACAAGCAGTC
GCCGGATGTAGAGGTCCCCAATGGCCACGGATCACCCACATCCCTTACCA
GGGTTCTGGTTCACCAGGCGCCGGAGGATCAACCCGTACCGCCCGCTCCG
GCACCCATGAAGAAGCTAAAGCACCACGTCGAGTTCCTGTCCACCTCGCC
CACTCGCCATCAGTCGCAATCCCTGCCCAATTCGCGGCATCCCAGCCAGC
AGAGGCCGGCGCTTGGAAGGATCGCCAGTGCACCGCAGTCGCCCACTGCC
GGCTCCTCCAAGGTGGTCTCCGGCCACGAGTTCGACTCGATCAGCAACAT
AACGCTGAGCAACGCCCTGCGGCAGCTGGCCAGCTTGGTCCTCATAGCCA
GCGATATCTTCGACGACCTGCAGCGGGATCTGCAGGCGGTGGGCGAGCGG
GCGGGTCGTGTGCAGCGGAAGATTGCCGCCGTGGAGCGACGCGTCTGTGC
CTACGATCCGAAAACGGTCACAGTTCCTGAAAGCGACCTGCTCACCTTCG
CACAGCGCAAACACCACTTCGAGACGGACAAGTCATTCCAGCAGGAGCTC
TTTACAGGCGAGACCAGACCTCTGAGCGTCCGGCAGCTTTACACGGAGGC
TGGTAAGGAGCTGCCGGTGGCCACCGGAGCCACTGCGACTGCCCTCGCCT
CCTTGGCGCACTCGCAGTCGCTGATCCCGTCCCGTTCCATCTCCTTCAAC
GGTGAGGTTCTGTCCAGCGATCACGAAGTTCTACAACTAAATGGATCCAC
GGACACGGAGGATCATCTGCTGTGCGTGTCGGACTTTGGCAATGCCAACC
GCAAGCTGCGCACGCGCATCGATGCCGAGATCGAGATCCGACTGCCCGCT
GCCATTGAGGATTTGCGGAAGTGGACGTCCAGCGAGGCGCTGGGTGATGT
CACCGTCACGCCGGATTGCATGCATCACGTGGACACCTCGGTGAGCACAT
CGCTGGCCATCGGCGAGAATGGCATCCTGACCCCGGCGCTGTCACCGTCC
GTCCTATCCGCCGATGCCGTCGATGCCCTCTACGCCCAGAATCTGAGCCA
GGCGGCGGACAGCTCCCGGCACAACCACCACACGCAAGCCCTCATCCCGA
ACGATATTAATAAAGACGTGCCTTTGAATCATCGATTGCCTTCACCCGAA
GAACAGACCAAGCAGATTGCCTTAAAATACCCCGCCGAAGTGATTTCGGT
GAACACCAGCGGTAAGCACTTCCAGCGGATGTGTGCGGCTCGCAAGTCGA
CCAGTGGAGGATACGCAGGTGGCGCCACCGCCGGATCCTCGAGCAGCACA
TCGCCGGAGAACGCCGGCCAAACGGAGGGCAACAACCTGGACGACAATGT
GCAGACGGTGAGCCGGAGGTCAAGATCGCGCAAGGTGCGCGGAAAGCGGC
GGAACACGATAGCCGGAATCGATCAGAAGGAGATCCAGGATGCGGCTAAT
GGGGTATCAACGTTTCTCGCAAGCTTTCTAGACCAT

BO18266.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
gukh-RB 1605 CG31043-PB 1..1602 17..1618 7995 99.9 Plus
gukh-RE 5295 CG31043-PE 1..1586 17..1602 7915 99.9 Plus
gukh-RC 3135 CG31043-PC 1..1586 17..1602 7915 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
gukh-RB 3575 CG31043-RB 482..2083 17..1618 7995 99.9 Plus
gukh-RE 6191 CG31043-RE 482..2067 17..1602 7915 99.9 Plus
gukh-RC 4011 CG31043-RC 482..2067 17..1602 7915 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18984506..18985115 17..626 3035 99.8 Plus
3R 32079331 3R 19008504..19008871 627..994 1840 100 Plus
3R 32079331 3R 19011560..19011892 994..1326 1665 100 Plus
3R 32079331 3R 19013174..19013450 1327..1603 1385 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:04:11 has no hits.

BO18266.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:49:37 Download gff for BO18266.complete
Subject Subject Range Query Range Percent Splice Strand
gukh-RB 482..2083 17..1620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:05 Download gff for BO18266.complete
Subject Subject Range Query Range Percent Splice Strand
gukh-RB 482..2083 17..1620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:10 Download gff for BO18266.complete
Subject Subject Range Query Range Percent Splice Strand
gukh-RB 482..2083 17..1620 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:10 Download gff for BO18266.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19011561..19011892 995..1326 100 -> Plus
3R 19013174..19013449 1327..1602 100 -> Plus
3R 19008504..19008871 627..994 100 -> Plus
3R 18984506..18985115 17..626 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:05 Download gff for BO18266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14810228..14810837 17..626 99 -> Plus
arm_3R 14834226..14834593 627..994 100 -> Plus
arm_3R 14837283..14837614 995..1326 100 -> Plus
arm_3R 14838896..14839171 1327..1602 100 -> Plus

BO18266.3prime Sequence

746 bp (707 high quality bases) assembled on 2006-10-13

> BO18266.3prime
ATGGTCTAGAAAGCTTGCGAGAAACGTTGATACCCCATTAGCCGCATCCT
GGATCTCCTTCTGATCGATTCCGGCTATCGTGTTCCGCCGCTTTCCGCGC
ACCTTGCGCGATCTTGACCTCCGGCTCACCGTCTGCACATTGTCGTCCAG
GTTGTTGCCCTCCGTTTGGCCGGCGTTCTCCGGCGATGTGCTGCTCGAGG
ATCCGGCGGTGGCGCCACCTGCGTATCCTCCACTGGTCGACTTGCGAGCC
GCACACATCCGCTGGAAGTGCTTACCGCTGGTGTTCACCGAAATCACTTC
GGCGGGGTATTTTAAGGCAATCTGCTTGGTCTGTTCTTCGGGTGAAGGCA
ATCGATGATTCAAAGGCACGTCTTTATTAATATCGTTCGGGATGAGGGCT
TGCGTGTGGTGGTTGTGCCGGGAGCTGTCCGCCGCCTGGCTCAGATTCTG
GGCGTAGAGGGCATCGACGGCATCGGCGGATAGGACGGACGGTGACAGCG
CCGGGGTCAGGATGCCATTCTCGCCGATGGCCAGCGATGTGCTCACCGAG
GTGTCCACGTGATGCATGCAATCCGGCGTGACGGTGACATCCCCCAGCGC
CTCGCTGGACGTCCACTTCCGCAAATCCTCAATGGCAGCGGGCAGTCGGA
TCTCGATCTCGGCATCGATGCGCGTGCGCAGCTTGCGGTTGGCATTGCCA
AAGTCCGACACGCACAGCAGATGATCCTCCGTGTCCGTGGATCCAT

BO18266.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31043-PB 1605 gukh-RB 875..1602 746..19 3615 99.8 Minus
CG31043-PA 5367 gukh-RA 875..1586 746..35 3535 99.8 Minus
CG31043-PC 3135 gukh-RC 875..1586 746..35 3535 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
gukh-RB 3575 CG31043-RB 1356..2083 746..19 3625 99.9 Minus
gukh-RE 6191 CG31043-RE 1356..2067 746..35 3545 99.9 Minus
gukh-RC 4011 CG31043-RC 1356..2067 746..35 3545 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19011560..19011892 643..311 1650 99.7 Minus
3R 32079331 3R 19013174..19013450 310..34 1385 100 Minus
3R 32079331 3R 19008768..19008871 746..643 520 100 Minus
Blast to na_te.dros performed on 2015-02-05 01:53:42 has no hits.

BO18266.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:41 Download gff for BO18266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31043-PB 875..1605 15..746 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:05:46 Download gff for BO18266.3prime
Subject Subject Range Query Range Percent Splice Strand
gukh-RB 1356..2086 15..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:00:34 Download gff for BO18266.3prime
Subject Subject Range Query Range Percent Splice Strand
gukh-RB 1356..2086 15..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:00:34 Download gff for BO18266.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19008768..19008871 643..746 100 -> Minus
3R 19011561..19011892 311..642 99 -> Minus
3R 19013174..19013449 35..310 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:05:46 Download gff for BO18266.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14834490..14834593 643..746 100 -> Minus
arm_3R 14837283..14837614 311..642 99 -> Minus
arm_3R 14838896..14839171 35..310 100 -> Minus

BO18266.5prime Sequence

722 bp (682 high quality bases) assembled on 2006-10-13

> BO18266.5prime
GAAGTTATCAGTCGACATGCCCTTCGTCCAGCGCGTGGTGCAGCCCGTCA
ATGTGGCCCAGGCCACGGCGGCCAGTTTGGGCCACGCATCCGGACGATTC
CACTGCACGCCGGGCAAGTGCCGGAACAACAACTGCATTAACAAGCAGTC
GCCGGATGTAGAGGTCCCCAATGGCCACGGATCACCCACATCCCTTACCA
GGGTTCTGGTTCACCAGGCGCCGGAGGATCAACCCGTACCGCCCGCTCCG
GCACCCATGAAGAAGCTAAAGCACCACGTCGAGTTCCTGTCCACCTCGCC
CACTCGCCATCAGTCGCAATCCCTGCCCAATTCGCGGCATCCCAGCCAGC
AGAGGCCGGCGCTTGGAAGGATCGCCAGTGCACCGCAGTCGCCCACTGCC
GGCTCCTCCAAGGTGGTCTCCGGCCACGAGTTCGACTCGATCAGCAACAT
AACGCTGAGCAACGCCCTGCGGCAGCTGGCCAGCTTGGTCCTCATAGCCA
GCGATATCTTCGACGACCTGCAGCGGGATCTGCAGGCGGTGGGCGAGCGG
GCGGGTCGTGTGCAGCGGAAGATTGCCGCCGTGGAGCGACGCGTCTGTGC
CTACGATCCGAAAACGGTCACAGTTCCTGAAAGCGACCTGCTCACCTTCG
CACAGCGCAAACACCACTTCGAGACGGACAAGTCATTCCAGCAGGAGCTC
TTTACAGGCGAGAACCAACCTC

BO18266.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31043-PB 1605 gukh-RB 1..697 17..713 3460 99.8 Plus
CG31043-PA 5367 gukh-RA 1..697 17..713 3460 99.8 Plus
CG31043-PC 3135 gukh-RC 1..697 17..713 3460 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
gukh-RE 6191 CG31043-RE 482..1178 17..713 3470 99.9 Plus
gukh-RC 4011 CG31043-RC 482..1178 17..713 3470 99.9 Plus
gukh-RA 6268 CG31043-RA 482..1178 17..713 3470 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18984506..18985115 17..626 3035 99.8 Plus
3R 32079331 3R 19008504..19008590 627..713 435 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:08:43 has no hits.

BO18266.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:42 Download gff for BO18266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31043-PC 1..706 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:41:39 Download gff for BO18266.5prime
Subject Subject Range Query Range Percent Splice Strand
gukh-RA 479..1187 14..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:07 Download gff for BO18266.5prime
Subject Subject Range Query Range Percent Splice Strand
gukh-RA 479..1187 14..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:07 Download gff for BO18266.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18984503..18985115 14..626 99 -> Plus
3R 19008504..19008599 627..722 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:41:39 Download gff for BO18266.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14810225..14810837 14..626 99 -> Plus
arm_3R 14834226..14834321 627..722 97   Plus

BO18266.pep Sequence

Translation from 16 to 1636

> BO18266.pep
MPFVQRVVQPVNVAQATAASLGHASGRFHCTPGKCRNNNCINKQSPDVEV
PNGHGSPTSLTRVLVHQAPEDQPVPPAPAPMKKLKHHVEFLSTSPTRHQS
QSLPNSRHPSQQRPALGRIASAPQSPTAGSSKVVSGHEFDSISNITLSNA
LRQLASLVLIASDIFDDLQRDLQAVGERAGRVQRKIAAVERRVCAYDPKT
VTVPESDLLTFAQRKHHFETDKSFQQELFTGETRPLSVRQLYTEAGKELP
VATGATATALASLAHSQSLIPSRSISFNGEVLSSDHEVLQLNGSTDTEDH
LLCVSDFGNANRKLRTRIDAEIEIRLPAAIEDLRKWTSSEALGDVTVTPD
CMHHVDTSVSTSLAIGENGILTPALSPSVLSADAVDALYAQNLSQAADSS
RHNHHTQALIPNDINKDVPLNHRLPSPEEQTKQIALKYPAEVISVNTSGK
HFQRMCAARKSTSGGYAGGATAGSSSSTSPENAGQTEGNNLDDNVQTVSR
RSRSRKVRGKRRNTIAGIDQKEIQDAANGVSTFLASFLDH

BO18266.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
gukh-PB 534 CG31043-PB 1..534 1..534 2724 100 Plus
gukh-PC 1044 CG31043-PC 1..530 1..530 2702 99.8 Plus
gukh-PE 1764 CG31043-PE 1..529 1..529 2701 100 Plus
gukh-PA 1788 CG31043-PA 1..529 1..529 2701 100 Plus
SCAR-PA 613 CG4636-PA 27..136 138..251 170 33.3 Plus