Clone Sequence Records
BO18266.complete Sequence
1636 bp assembled on 2009-10-20
GenBank Submission: KX796284
> BO18266.complete
GAAGTTATCAGTCGACATGCCCTTCGTCCAGCGCGTGGTGCAGCCCGTCA
ATGTGGCCCAGGCCACGGCGGCCAGTTTGGGCCACGCATCCGGACGATTC
CACTGCACGCCGGGCAAGTGCCGGAACAACAACTGCATTAACAAGCAGTC
GCCGGATGTAGAGGTCCCCAATGGCCACGGATCACCCACATCCCTTACCA
GGGTTCTGGTTCACCAGGCGCCGGAGGATCAACCCGTACCGCCCGCTCCG
GCACCCATGAAGAAGCTAAAGCACCACGTCGAGTTCCTGTCCACCTCGCC
CACTCGCCATCAGTCGCAATCCCTGCCCAATTCGCGGCATCCCAGCCAGC
AGAGGCCGGCGCTTGGAAGGATCGCCAGTGCACCGCAGTCGCCCACTGCC
GGCTCCTCCAAGGTGGTCTCCGGCCACGAGTTCGACTCGATCAGCAACAT
AACGCTGAGCAACGCCCTGCGGCAGCTGGCCAGCTTGGTCCTCATAGCCA
GCGATATCTTCGACGACCTGCAGCGGGATCTGCAGGCGGTGGGCGAGCGG
GCGGGTCGTGTGCAGCGGAAGATTGCCGCCGTGGAGCGACGCGTCTGTGC
CTACGATCCGAAAACGGTCACAGTTCCTGAAAGCGACCTGCTCACCTTCG
CACAGCGCAAACACCACTTCGAGACGGACAAGTCATTCCAGCAGGAGCTC
TTTACAGGCGAGACCAGACCTCTGAGCGTCCGGCAGCTTTACACGGAGGC
TGGTAAGGAGCTGCCGGTGGCCACCGGAGCCACTGCGACTGCCCTCGCCT
CCTTGGCGCACTCGCAGTCGCTGATCCCGTCCCGTTCCATCTCCTTCAAC
GGTGAGGTTCTGTCCAGCGATCACGAAGTTCTACAACTAAATGGATCCAC
GGACACGGAGGATCATCTGCTGTGCGTGTCGGACTTTGGCAATGCCAACC
GCAAGCTGCGCACGCGCATCGATGCCGAGATCGAGATCCGACTGCCCGCT
GCCATTGAGGATTTGCGGAAGTGGACGTCCAGCGAGGCGCTGGGTGATGT
CACCGTCACGCCGGATTGCATGCATCACGTGGACACCTCGGTGAGCACAT
CGCTGGCCATCGGCGAGAATGGCATCCTGACCCCGGCGCTGTCACCGTCC
GTCCTATCCGCCGATGCCGTCGATGCCCTCTACGCCCAGAATCTGAGCCA
GGCGGCGGACAGCTCCCGGCACAACCACCACACGCAAGCCCTCATCCCGA
ACGATATTAATAAAGACGTGCCTTTGAATCATCGATTGCCTTCACCCGAA
GAACAGACCAAGCAGATTGCCTTAAAATACCCCGCCGAAGTGATTTCGGT
GAACACCAGCGGTAAGCACTTCCAGCGGATGTGTGCGGCTCGCAAGTCGA
CCAGTGGAGGATACGCAGGTGGCGCCACCGCCGGATCCTCGAGCAGCACA
TCGCCGGAGAACGCCGGCCAAACGGAGGGCAACAACCTGGACGACAATGT
GCAGACGGTGAGCCGGAGGTCAAGATCGCGCAAGGTGCGCGGAAAGCGGC
GGAACACGATAGCCGGAATCGATCAGAAGGAGATCCAGGATGCGGCTAAT
GGGGTATCAACGTTTCTCGCAAGCTTTCTAGACCAT
BO18266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gukh-RB | 1605 | CG31043-PB | 1..1602 | 17..1618 | 7995 | 99.9 | Plus |
gukh-RE | 5295 | CG31043-PE | 1..1586 | 17..1602 | 7915 | 99.9 | Plus |
gukh-RC | 3135 | CG31043-PC | 1..1586 | 17..1602 | 7915 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gukh-RB | 3575 | CG31043-RB | 482..2083 | 17..1618 | 7995 | 99.9 | Plus |
gukh-RE | 6191 | CG31043-RE | 482..2067 | 17..1602 | 7915 | 99.9 | Plus |
gukh-RC | 4011 | CG31043-RC | 482..2067 | 17..1602 | 7915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18984506..18985115 | 17..626 | 3035 | 99.8 | Plus |
3R | 32079331 | 3R | 19008504..19008871 | 627..994 | 1840 | 100 | Plus |
3R | 32079331 | 3R | 19011560..19011892 | 994..1326 | 1665 | 100 | Plus |
3R | 32079331 | 3R | 19013174..19013450 | 1327..1603 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:04:11 has no hits.
BO18266.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:49:37 Download gff for
BO18266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gukh-RB | 482..2083 | 17..1620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:05 Download gff for
BO18266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gukh-RB | 482..2083 | 17..1620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:10 Download gff for
BO18266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gukh-RB | 482..2083 | 17..1620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:10 Download gff for
BO18266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19011561..19011892 | 995..1326 | 100 | -> | Plus |
3R | 19013174..19013449 | 1327..1602 | 100 | -> | Plus |
3R | 19008504..19008871 | 627..994 | 100 | -> | Plus |
3R | 18984506..18985115 | 17..626 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:05 Download gff for
BO18266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14810228..14810837 | 17..626 | 99 | -> | Plus |
arm_3R | 14834226..14834593 | 627..994 | 100 | -> | Plus |
arm_3R | 14837283..14837614 | 995..1326 | 100 | -> | Plus |
arm_3R | 14838896..14839171 | 1327..1602 | 100 | -> | Plus |
BO18266.3prime Sequence
746 bp (707 high quality bases) assembled on 2006-10-13
> BO18266.3prime
ATGGTCTAGAAAGCTTGCGAGAAACGTTGATACCCCATTAGCCGCATCCT
GGATCTCCTTCTGATCGATTCCGGCTATCGTGTTCCGCCGCTTTCCGCGC
ACCTTGCGCGATCTTGACCTCCGGCTCACCGTCTGCACATTGTCGTCCAG
GTTGTTGCCCTCCGTTTGGCCGGCGTTCTCCGGCGATGTGCTGCTCGAGG
ATCCGGCGGTGGCGCCACCTGCGTATCCTCCACTGGTCGACTTGCGAGCC
GCACACATCCGCTGGAAGTGCTTACCGCTGGTGTTCACCGAAATCACTTC
GGCGGGGTATTTTAAGGCAATCTGCTTGGTCTGTTCTTCGGGTGAAGGCA
ATCGATGATTCAAAGGCACGTCTTTATTAATATCGTTCGGGATGAGGGCT
TGCGTGTGGTGGTTGTGCCGGGAGCTGTCCGCCGCCTGGCTCAGATTCTG
GGCGTAGAGGGCATCGACGGCATCGGCGGATAGGACGGACGGTGACAGCG
CCGGGGTCAGGATGCCATTCTCGCCGATGGCCAGCGATGTGCTCACCGAG
GTGTCCACGTGATGCATGCAATCCGGCGTGACGGTGACATCCCCCAGCGC
CTCGCTGGACGTCCACTTCCGCAAATCCTCAATGGCAGCGGGCAGTCGGA
TCTCGATCTCGGCATCGATGCGCGTGCGCAGCTTGCGGTTGGCATTGCCA
AAGTCCGACACGCACAGCAGATGATCCTCCGTGTCCGTGGATCCAT
BO18266.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31043-PB | 1605 | gukh-RB | 875..1602 | 746..19 | 3615 | 99.8 | Minus |
CG31043-PA | 5367 | gukh-RA | 875..1586 | 746..35 | 3535 | 99.8 | Minus |
CG31043-PC | 3135 | gukh-RC | 875..1586 | 746..35 | 3535 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gukh-RB | 3575 | CG31043-RB | 1356..2083 | 746..19 | 3625 | 99.9 | Minus |
gukh-RE | 6191 | CG31043-RE | 1356..2067 | 746..35 | 3545 | 99.9 | Minus |
gukh-RC | 4011 | CG31043-RC | 1356..2067 | 746..35 | 3545 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19011560..19011892 | 643..311 | 1650 | 99.7 | Minus |
3R | 32079331 | 3R | 19013174..19013450 | 310..34 | 1385 | 100 | Minus |
3R | 32079331 | 3R | 19008768..19008871 | 746..643 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:53:42 has no hits.
BO18266.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:41 Download gff for
BO18266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31043-PB | 875..1605 | 15..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:05:46 Download gff for
BO18266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gukh-RB | 1356..2086 | 15..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:00:34 Download gff for
BO18266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gukh-RB | 1356..2086 | 15..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:00:34 Download gff for
BO18266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19008768..19008871 | 643..746 | 100 | -> | Minus |
3R | 19011561..19011892 | 311..642 | 99 | -> | Minus |
3R | 19013174..19013449 | 35..310 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:05:46 Download gff for
BO18266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14834490..14834593 | 643..746 | 100 | -> | Minus |
arm_3R | 14837283..14837614 | 311..642 | 99 | -> | Minus |
arm_3R | 14838896..14839171 | 35..310 | 100 | -> | Minus |
BO18266.5prime Sequence
722 bp (682 high quality bases) assembled on 2006-10-13
> BO18266.5prime
GAAGTTATCAGTCGACATGCCCTTCGTCCAGCGCGTGGTGCAGCCCGTCA
ATGTGGCCCAGGCCACGGCGGCCAGTTTGGGCCACGCATCCGGACGATTC
CACTGCACGCCGGGCAAGTGCCGGAACAACAACTGCATTAACAAGCAGTC
GCCGGATGTAGAGGTCCCCAATGGCCACGGATCACCCACATCCCTTACCA
GGGTTCTGGTTCACCAGGCGCCGGAGGATCAACCCGTACCGCCCGCTCCG
GCACCCATGAAGAAGCTAAAGCACCACGTCGAGTTCCTGTCCACCTCGCC
CACTCGCCATCAGTCGCAATCCCTGCCCAATTCGCGGCATCCCAGCCAGC
AGAGGCCGGCGCTTGGAAGGATCGCCAGTGCACCGCAGTCGCCCACTGCC
GGCTCCTCCAAGGTGGTCTCCGGCCACGAGTTCGACTCGATCAGCAACAT
AACGCTGAGCAACGCCCTGCGGCAGCTGGCCAGCTTGGTCCTCATAGCCA
GCGATATCTTCGACGACCTGCAGCGGGATCTGCAGGCGGTGGGCGAGCGG
GCGGGTCGTGTGCAGCGGAAGATTGCCGCCGTGGAGCGACGCGTCTGTGC
CTACGATCCGAAAACGGTCACAGTTCCTGAAAGCGACCTGCTCACCTTCG
CACAGCGCAAACACCACTTCGAGACGGACAAGTCATTCCAGCAGGAGCTC
TTTACAGGCGAGAACCAACCTC
BO18266.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31043-PB | 1605 | gukh-RB | 1..697 | 17..713 | 3460 | 99.8 | Plus |
CG31043-PA | 5367 | gukh-RA | 1..697 | 17..713 | 3460 | 99.8 | Plus |
CG31043-PC | 3135 | gukh-RC | 1..697 | 17..713 | 3460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gukh-RE | 6191 | CG31043-RE | 482..1178 | 17..713 | 3470 | 99.9 | Plus |
gukh-RC | 4011 | CG31043-RC | 482..1178 | 17..713 | 3470 | 99.9 | Plus |
gukh-RA | 6268 | CG31043-RA | 482..1178 | 17..713 | 3470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18984506..18985115 | 17..626 | 3035 | 99.8 | Plus |
3R | 32079331 | 3R | 19008504..19008590 | 627..713 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:08:43 has no hits.
BO18266.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:42 Download gff for
BO18266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31043-PC | 1..706 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:41:39 Download gff for
BO18266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gukh-RA | 479..1187 | 14..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:07 Download gff for
BO18266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gukh-RA | 479..1187 | 14..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:07 Download gff for
BO18266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18984503..18985115 | 14..626 | 99 | -> | Plus |
3R | 19008504..19008599 | 627..722 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:41:39 Download gff for
BO18266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14810225..14810837 | 14..626 | 99 | -> | Plus |
arm_3R | 14834226..14834321 | 627..722 | 97 | | Plus |
BO18266.pep Sequence
Translation from 16 to 1636
> BO18266.pep
MPFVQRVVQPVNVAQATAASLGHASGRFHCTPGKCRNNNCINKQSPDVEV
PNGHGSPTSLTRVLVHQAPEDQPVPPAPAPMKKLKHHVEFLSTSPTRHQS
QSLPNSRHPSQQRPALGRIASAPQSPTAGSSKVVSGHEFDSISNITLSNA
LRQLASLVLIASDIFDDLQRDLQAVGERAGRVQRKIAAVERRVCAYDPKT
VTVPESDLLTFAQRKHHFETDKSFQQELFTGETRPLSVRQLYTEAGKELP
VATGATATALASLAHSQSLIPSRSISFNGEVLSSDHEVLQLNGSTDTEDH
LLCVSDFGNANRKLRTRIDAEIEIRLPAAIEDLRKWTSSEALGDVTVTPD
CMHHVDTSVSTSLAIGENGILTPALSPSVLSADAVDALYAQNLSQAADSS
RHNHHTQALIPNDINKDVPLNHRLPSPEEQTKQIALKYPAEVISVNTSGK
HFQRMCAARKSTSGGYAGGATAGSSSSTSPENAGQTEGNNLDDNVQTVSR
RSRSRKVRGKRRNTIAGIDQKEIQDAANGVSTFLASFLDH
BO18266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gukh-PB | 534 | CG31043-PB | 1..534 | 1..534 | 2724 | 100 | Plus |
gukh-PC | 1044 | CG31043-PC | 1..530 | 1..530 | 2702 | 99.8 | Plus |
gukh-PE | 1764 | CG31043-PE | 1..529 | 1..529 | 2701 | 100 | Plus |
gukh-PA | 1788 | CG31043-PA | 1..529 | 1..529 | 2701 | 100 | Plus |
SCAR-PA | 613 | CG4636-PA | 27..136 | 138..251 | 170 | 33.3 | Plus |