Clone Sequence Records
BO18267.3prime Sequence
795 bp (690 high quality bases) assembled on 2006-10-13
> BO18267.3prime
ATGGTCTAGAAAGCTTGCCTTAATCACAATCGTCTCCACGGGCTGACTGA
TTCCAAAGATGTGCTGCGCCAGCATCAAGTGTTCTTGGTTAATGAAATTC
GCAAGCAAAGTGATCACGTTCTCATTGCAGCGGGCAATCTGCTGGCGTGT
TATCGCCCTGAATTCATCTCGGGCTCCTTTGTCCGCTCCACGGGTGCCAA
TTCTTCGGCTTTGGGAACCACCAGCTACAGTGGTCGCAGTAGGTGTGCCA
CTCGAATTTGGCGAGCTGGTCAACTCAAAGTTATCCTCCTGCTGGGAGTT
CCAAATGTGCGAGAGTTCCTCGAGCAAATCGATATTAATAATGTAGGTGG
ATAGGGTGCGCAGATTGAACGATTTCCGTTGCTTGATCAGGTTAAATATC
TGTTGAGTGAGCAGAACATCGTTGAGTAGATTAAGTTGCTGCAGCACTAG
GATATCCCCTAGCAATCGATCTGGAACGTTCGGTTCGAAGACCTTGCGAC
TCAGTCTGCTGATGATGGCTCCCACGCAGTACTGAACCAACGCTGATCGA
GTGAGGGGCAGAAAAACCATGTGCCTGTGGCCCTTCAGCGACATATTCTC
CAAAAGTTGACCCTGGGTGGTGGGGAGTTCTGACAGGATCTTTAAAATGC
ACTGGAAGCCCTGGAGCGTCATGCTGCCTTGCATTAGATTAAGGCTCAAG
ATCTGCAGGCTTTGCACCAGACTGCTCTGGGTGGTCATGTCCGCCATAAG
CTTGTTGGCCTCATCCCGGGTGTCCGAAATATATGGCCAAGTCAA
BO18267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1120-PA | 1896 | CG1120-RA | 1120..1893 | 793..19 | 3835 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS10-RA | 2272 | CG1120-RA | 1222..1995 | 793..19 | 3850 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3808165..3808813 | 667..19 | 3245 | 100 | Minus |
3L | 28110227 | 3L | 3807984..3808109 | 793..667 | 585 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:08:51 has no hits.
BO18267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:42 Download gff for
BO18267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1120-PA | 1120..1896 | 16..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:41:44 Download gff for
BO18267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS10-RA | 1222..1999 | 15..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:36 Download gff for
BO18267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS10-RA | 1222..1999 | 15..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:36 Download gff for
BO18267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3807984..3808109 | 667..793 | 99 | -> | Minus |
3L | 3808166..3808817 | 15..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:41:44 Download gff for
BO18267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3807984..3808109 | 667..793 | 99 | -> | Minus |
arm_3L | 3808166..3808817 | 15..666 | 99 | | Minus |
BO18267.5prime Sequence
781 bp (780 high quality bases) assembled on 2006-10-13
> BO18267.5prime
GAAGTTATCAGTCGACATGCCGAGCCAAGAGGAAAATGAGTTGTACATGG
TCAAGGAGGCGCAAAGACTCCGGAAAAGCGATCCTTGCGCGGCCATGGCC
TGGATTATCACAGCTAAAACTTTATATCCCAATGCATTCAACCTGCAATA
CGAGGCTTATCTACTGGAACGCGATGCTCAGAATTATGAGGAGGCAGCAA
AGTGTTTCAGTGCTATAGCCACCAATTTCCAGAATCAACATACGGAGCTG
TGGCAGGAGATCAACTCCCTAACAAATGCCCTCAGAAATGAGAATGAAAC
TACGCCGGAACACGAGTTCTATGTAAAAATGTACAAGCACCTAACTCCGG
AAGTACAGCACAACATATTCATGCACACCATCAACCACAGTGCCGATAAT
CTGGAGCGCATCTATATCTACATACTGATGTTCAACAAGTTTCCCAAATC
AGCCATAACTCAGGCTCCCAGGCTACTGGAAATGCTGGCGGAGGGCATGA
AAACCGAACCGGATCTCTATCAGCGGATTCTGGTGGAGGAGGTATTGCCC
ATGATCCAGAATAAGCCCCCGGAACTTTCGCCAAATCTGGCCTGCAGACT
TTATACCAGTTCCTTGGAGTTTTATTTGCGGCAAATAATGGATGAATCGG
ATACAGCAGATGCCTGGAAGAACATCTTTAAAGTGCTGATGATCTGCGGT
CAGATGATGGGCTGGGAGCCCTTCCTGCCCTTCAGCAAGCATGTCAACCA
GAACGTCTACTGGGAAAAGCTGGTGGACATA
BO18267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1120-PA | 1896 | CG1120-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS10-RA | 2272 | CG1120-RA | 101..867 | 15..781 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3807065..3807629 | 217..781 | 2825 | 100 | Plus |
3L | 28110227 | 3L | 3806810..3807011 | 15..216 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:17:54 has no hits.
BO18267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:43 Download gff for
BO18267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1120-PA | 1..764 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:14 Download gff for
BO18267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS10-RA | 97..866 | 10..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:35 Download gff for
BO18267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS10-RA | 97..866 | 10..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:35 Download gff for
BO18267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3806806..3807011 | 10..216 | 98 | -> | Plus |
3L | 3807065..3807628 | 217..780 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:14 Download gff for
BO18267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3806806..3807011 | 10..216 | 98 | -> | Plus |
arm_3L | 3807065..3807628 | 217..780 | 100 | | Plus |
BO18267.complete Sequence
1927 bp assembled on 2007-03-23
GenBank Submission: FJ634366
> BO18267.complete
GAAGTTATCAGTCGACATGCCGAGCCAAGAGGAAAATGAGTTGTACATGG
TCAAGGAGGCGCAAAGACTCCGGAAAAGCGATCCTTGCGCGGCCATGGCC
TGGATTATCACAGCTAAAACTTTATATCCCAATGCATTCAACCTGCAATA
CGAGGCTTATCTACTGGAACGCGATGCTCAGAATTATGAGGAGGCAGCAA
AGTGTTTCAGTGCTATAGCCACCAATTTCCAGAATCAACATACGGAGCTG
TGGCAGGAGATCAACTCCCTAACAAATGCCCTCAGAAATGAGAATGAAAC
TACGCCGGAACACGAGTTCTATGTAAAAATGTACAAGCACCTAACTCCGG
AAGTACAGCACAACATATTCATGCACACCATCAACCACAGTGCCGATAAT
CTGGAGCGCATCTATATCTACATACTGATGTTCAACAAGTTTCCCAAATC
AGCCATAACTCAGGCTCCCAGGCTACTGGAAATGCTGGCGGAGGGCATGA
AAACCGAACCGGATCTCTATCAGCGGATTCTGGTGGAGGAGGTATTGCCC
ATGATCCAGAATAAGCCCCCGGAACTTTCGCCAAATCTGGCCTGCAGACT
TTATACCAGTTCCTTGGAGTTTTATTTGCGGCAAATAATGGATGAATCGG
ATACAGCAGATGCCTGGAAGAACATCTTTAAAGTGCTGATGATCTGCGGT
CAGATGATGGGCTGGGAGCCCTTCCTGCCCTTCAGCAAGCATGTCAACCA
GAACGTCTACTGGGAAAAGCTGGTGGACATACTTTCCGGCAGTCCTGCGG
GCAGCTCCCAGGTTTTGTTCTACGCCACCACCTTGTTCATTTACTCCCTT
CATGGTTATATACGAAATTGTAAGCTGAGGATCGAGGATGCCGATGTAAC
TCATGTTTTGGTAGAAGGATTCATGGAATGGTCGCCGGAAGGTGATGGCT
CCGAAGTGCCCAGCATGGAGCCACCGAAATTCTCCCTGACCACGGCCATA
AGTCCAGAGTTATCCAAGGCCTTCCTACACGCCGCCCAGTGCTGGCAGCT
GCTCAATACGGATCAGTTCCAAAGGGATTTCAGTCAACTTATGCTGGCTC
TTCCCTTGGCGCCTTGGATCTCAAGATTCCTCTTCGACTTGGCCATATAT
TTCGGACACCGGGATGAGGCCAACAAGCTTATGGCGGACATGACCACCCA
GAGCAGTCTGGTGCAAAGCCTGCAGATCTTGAGCCTTAATCTAATGCAAG
GCAGCATGACGCTCCAGGGCTTCCAGTGCATTTTAAAGATCCTGTCAGAA
CTCCCCACCACCCAGGGTCAACTTTTGGAGAATATGTCGCTGAAGGGCCA
CAGGCACATGGTTTTTCTGCCCCTCACTCGATCAGCGTTGGTTCAGTACT
GCGTGGGAGCCATCATCAGCAGACTGAGTCGCAAGGTCTTCGAACCGAAC
GTTCCAGATCGATTGCTAGGGGATATCCTAGTGCTGCAGCAACTTAATCT
ACTCAACGATGTTCTGCTCACTCAACAGATATTTAACCTGATCAAGCAAC
GGAAATCGTTCAATCTGCGCACCCTATCCACCTACATTATTAATATCGAT
TTGCTCGAGGAACTCTCGCACATTTGGAACTCCCAGCAGGAGGATAACTT
TGAGTTGACCAGCTCGCCAAATTCGAGTGGCACACCTACTGCGACCACTG
TAGCTGGTGGTTCCCAAAGCCGAAGAATTGGCACCCGTGGAGCGGACAAA
GGAGCCCGAGATGAATTCAGGGCGATAACACGCCAGCAGATTGCCCGCTG
CAATGAGAACGTGATCACTTTGCTTGCGAATTTCATTAACCAAGAACACT
TGATGCTGGCGCAGCACATCTTTGGAATCAGTCAGCCCGTGGAGACGATT
GTGATTAAGGCAAGCTTTCTAGACCAT
BO18267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS10-RA | 1896 | CG1120-PA | 1..1893 | 17..1909 | 9465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS10-RA | 2272 | CG1120-RA | 101..1995 | 15..1909 | 9475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3807065..3808109 | 217..1261 | 5225 | 100 | Plus |
3L | 28110227 | 3L | 3808165..3808813 | 1261..1909 | 3245 | 100 | Plus |
3L | 28110227 | 3L | 3806810..3807011 | 15..216 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:02:30 has no hits.
BO18267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:11 Download gff for
BO18267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1120-RA | 1..1896 | 17..1912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:10 Download gff for
BO18267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1120-RA | 93..1995 | 10..1913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:12 Download gff for
BO18267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS10-RA | 103..1995 | 17..1911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:11 Download gff for
BO18267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1120-RA | 93..1995 | 10..1913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:56 Download gff for
BO18267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS10-RA | 103..1995 | 17..1911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:56 Download gff for
BO18267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3806812..3807011 | 17..216 | 100 | -> | Plus |
3L | 3807065..3808109 | 217..1261 | 100 | -> | Plus |
3L | 3808166..3808813 | 1262..1911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:12 Download gff for
BO18267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3806812..3807011 | 17..216 | 100 | -> | Plus |
arm_3L | 3807065..3808109 | 217..1261 | 100 | -> | Plus |
arm_3L | 3808166..3808813 | 1262..1911 | 99 | | Plus |
BO18267.pep Sequence
Translation from 16 to 1927
> BO18267.pep
MPSQEENELYMVKEAQRLRKSDPCAAMAWIITAKTLYPNAFNLQYEAYLL
ERDAQNYEEAAKCFSAIATNFQNQHTELWQEINSLTNALRNENETTPEHE
FYVKMYKHLTPEVQHNIFMHTINHSADNLERIYIYILMFNKFPKSAITQA
PRLLEMLAEGMKTEPDLYQRILVEEVLPMIQNKPPELSPNLACRLYTSSL
EFYLRQIMDESDTADAWKNIFKVLMICGQMMGWEPFLPFSKHVNQNVYWE
KLVDILSGSPAGSSQVLFYATTLFIYSLHGYIRNCKLRIEDADVTHVLVE
GFMEWSPEGDGSEVPSMEPPKFSLTTAISPELSKAFLHAAQCWQLLNTDQ
FQRDFSQLMLALPLAPWISRFLFDLAIYFGHRDEANKLMADMTTQSSLVQ
SLQILSLNLMQGSMTLQGFQCILKILSELPTTQGQLLENMSLKGHRHMVF
LPLTRSALVQYCVGAIISRLSRKVFEPNVPDRLLGDILVLQQLNLLNDVL
LTQQIFNLIKQRKSFNLRTLSTYIINIDLLEELSHIWNSQQEDNFELTSS
PNSSGTPTATTVAGGSQSRRIGTRGADKGARDEFRAITRQQIARCNENVI
TLLANFINQEHLMLAQHIFGISQPVETIVIKASFLDH
BO18267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS10-PA | 631 | CG1120-PA | 1..631 | 1..631 | 3266 | 100 | Plus |