Clone BO18267 Report

Search the DGRC for BO18267

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG1120-RA
Protein status:BO18267.pep: validated full length
Sequenced Size:1927

Clone Sequence Records

BO18267.3prime Sequence

795 bp (690 high quality bases) assembled on 2006-10-13

> BO18267.3prime
ATGGTCTAGAAAGCTTGCCTTAATCACAATCGTCTCCACGGGCTGACTGA
TTCCAAAGATGTGCTGCGCCAGCATCAAGTGTTCTTGGTTAATGAAATTC
GCAAGCAAAGTGATCACGTTCTCATTGCAGCGGGCAATCTGCTGGCGTGT
TATCGCCCTGAATTCATCTCGGGCTCCTTTGTCCGCTCCACGGGTGCCAA
TTCTTCGGCTTTGGGAACCACCAGCTACAGTGGTCGCAGTAGGTGTGCCA
CTCGAATTTGGCGAGCTGGTCAACTCAAAGTTATCCTCCTGCTGGGAGTT
CCAAATGTGCGAGAGTTCCTCGAGCAAATCGATATTAATAATGTAGGTGG
ATAGGGTGCGCAGATTGAACGATTTCCGTTGCTTGATCAGGTTAAATATC
TGTTGAGTGAGCAGAACATCGTTGAGTAGATTAAGTTGCTGCAGCACTAG
GATATCCCCTAGCAATCGATCTGGAACGTTCGGTTCGAAGACCTTGCGAC
TCAGTCTGCTGATGATGGCTCCCACGCAGTACTGAACCAACGCTGATCGA
GTGAGGGGCAGAAAAACCATGTGCCTGTGGCCCTTCAGCGACATATTCTC
CAAAAGTTGACCCTGGGTGGTGGGGAGTTCTGACAGGATCTTTAAAATGC
ACTGGAAGCCCTGGAGCGTCATGCTGCCTTGCATTAGATTAAGGCTCAAG
ATCTGCAGGCTTTGCACCAGACTGCTCTGGGTGGTCATGTCCGCCATAAG
CTTGTTGGCCTCATCCCGGGTGTCCGAAATATATGGCCAAGTCAA

BO18267.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1120-PA 1896 CG1120-RA 1120..1893 793..19 3835 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
IntS10-RA 2272 CG1120-RA 1222..1995 793..19 3850 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3808165..3808813 667..19 3245 100 Minus
3L 28110227 3L 3807984..3808109 793..667 585 99.2 Minus
Blast to na_te.dros performed on 2015-02-13 16:08:51 has no hits.

BO18267.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:42 Download gff for BO18267.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1120-PA 1120..1896 16..793 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:41:44 Download gff for BO18267.3prime
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 1222..1999 15..793 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:36 Download gff for BO18267.3prime
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 1222..1999 15..793 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:36 Download gff for BO18267.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3807984..3808109 667..793 99 -> Minus
3L 3808166..3808817 15..666 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:41:44 Download gff for BO18267.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3807984..3808109 667..793 99 -> Minus
arm_3L 3808166..3808817 15..666 99   Minus

BO18267.5prime Sequence

781 bp (780 high quality bases) assembled on 2006-10-13

> BO18267.5prime
GAAGTTATCAGTCGACATGCCGAGCCAAGAGGAAAATGAGTTGTACATGG
TCAAGGAGGCGCAAAGACTCCGGAAAAGCGATCCTTGCGCGGCCATGGCC
TGGATTATCACAGCTAAAACTTTATATCCCAATGCATTCAACCTGCAATA
CGAGGCTTATCTACTGGAACGCGATGCTCAGAATTATGAGGAGGCAGCAA
AGTGTTTCAGTGCTATAGCCACCAATTTCCAGAATCAACATACGGAGCTG
TGGCAGGAGATCAACTCCCTAACAAATGCCCTCAGAAATGAGAATGAAAC
TACGCCGGAACACGAGTTCTATGTAAAAATGTACAAGCACCTAACTCCGG
AAGTACAGCACAACATATTCATGCACACCATCAACCACAGTGCCGATAAT
CTGGAGCGCATCTATATCTACATACTGATGTTCAACAAGTTTCCCAAATC
AGCCATAACTCAGGCTCCCAGGCTACTGGAAATGCTGGCGGAGGGCATGA
AAACCGAACCGGATCTCTATCAGCGGATTCTGGTGGAGGAGGTATTGCCC
ATGATCCAGAATAAGCCCCCGGAACTTTCGCCAAATCTGGCCTGCAGACT
TTATACCAGTTCCTTGGAGTTTTATTTGCGGCAAATAATGGATGAATCGG
ATACAGCAGATGCCTGGAAGAACATCTTTAAAGTGCTGATGATCTGCGGT
CAGATGATGGGCTGGGAGCCCTTCCTGCCCTTCAGCAAGCATGTCAACCA
GAACGTCTACTGGGAAAAGCTGGTGGACATA

BO18267.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1120-PA 1896 CG1120-RA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
IntS10-RA 2272 CG1120-RA 101..867 15..781 3835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3807065..3807629 217..781 2825 100 Plus
3L 28110227 3L 3806810..3807011 15..216 1010 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:17:54 has no hits.

BO18267.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:43 Download gff for BO18267.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1120-PA 1..764 17..780 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:14 Download gff for BO18267.5prime
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 97..866 10..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:35 Download gff for BO18267.5prime
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 97..866 10..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:35 Download gff for BO18267.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3806806..3807011 10..216 98 -> Plus
3L 3807065..3807628 217..780 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:14 Download gff for BO18267.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3806806..3807011 10..216 98 -> Plus
arm_3L 3807065..3807628 217..780 100   Plus

BO18267.complete Sequence

1927 bp assembled on 2007-03-23

GenBank Submission: FJ634366

> BO18267.complete
GAAGTTATCAGTCGACATGCCGAGCCAAGAGGAAAATGAGTTGTACATGG
TCAAGGAGGCGCAAAGACTCCGGAAAAGCGATCCTTGCGCGGCCATGGCC
TGGATTATCACAGCTAAAACTTTATATCCCAATGCATTCAACCTGCAATA
CGAGGCTTATCTACTGGAACGCGATGCTCAGAATTATGAGGAGGCAGCAA
AGTGTTTCAGTGCTATAGCCACCAATTTCCAGAATCAACATACGGAGCTG
TGGCAGGAGATCAACTCCCTAACAAATGCCCTCAGAAATGAGAATGAAAC
TACGCCGGAACACGAGTTCTATGTAAAAATGTACAAGCACCTAACTCCGG
AAGTACAGCACAACATATTCATGCACACCATCAACCACAGTGCCGATAAT
CTGGAGCGCATCTATATCTACATACTGATGTTCAACAAGTTTCCCAAATC
AGCCATAACTCAGGCTCCCAGGCTACTGGAAATGCTGGCGGAGGGCATGA
AAACCGAACCGGATCTCTATCAGCGGATTCTGGTGGAGGAGGTATTGCCC
ATGATCCAGAATAAGCCCCCGGAACTTTCGCCAAATCTGGCCTGCAGACT
TTATACCAGTTCCTTGGAGTTTTATTTGCGGCAAATAATGGATGAATCGG
ATACAGCAGATGCCTGGAAGAACATCTTTAAAGTGCTGATGATCTGCGGT
CAGATGATGGGCTGGGAGCCCTTCCTGCCCTTCAGCAAGCATGTCAACCA
GAACGTCTACTGGGAAAAGCTGGTGGACATACTTTCCGGCAGTCCTGCGG
GCAGCTCCCAGGTTTTGTTCTACGCCACCACCTTGTTCATTTACTCCCTT
CATGGTTATATACGAAATTGTAAGCTGAGGATCGAGGATGCCGATGTAAC
TCATGTTTTGGTAGAAGGATTCATGGAATGGTCGCCGGAAGGTGATGGCT
CCGAAGTGCCCAGCATGGAGCCACCGAAATTCTCCCTGACCACGGCCATA
AGTCCAGAGTTATCCAAGGCCTTCCTACACGCCGCCCAGTGCTGGCAGCT
GCTCAATACGGATCAGTTCCAAAGGGATTTCAGTCAACTTATGCTGGCTC
TTCCCTTGGCGCCTTGGATCTCAAGATTCCTCTTCGACTTGGCCATATAT
TTCGGACACCGGGATGAGGCCAACAAGCTTATGGCGGACATGACCACCCA
GAGCAGTCTGGTGCAAAGCCTGCAGATCTTGAGCCTTAATCTAATGCAAG
GCAGCATGACGCTCCAGGGCTTCCAGTGCATTTTAAAGATCCTGTCAGAA
CTCCCCACCACCCAGGGTCAACTTTTGGAGAATATGTCGCTGAAGGGCCA
CAGGCACATGGTTTTTCTGCCCCTCACTCGATCAGCGTTGGTTCAGTACT
GCGTGGGAGCCATCATCAGCAGACTGAGTCGCAAGGTCTTCGAACCGAAC
GTTCCAGATCGATTGCTAGGGGATATCCTAGTGCTGCAGCAACTTAATCT
ACTCAACGATGTTCTGCTCACTCAACAGATATTTAACCTGATCAAGCAAC
GGAAATCGTTCAATCTGCGCACCCTATCCACCTACATTATTAATATCGAT
TTGCTCGAGGAACTCTCGCACATTTGGAACTCCCAGCAGGAGGATAACTT
TGAGTTGACCAGCTCGCCAAATTCGAGTGGCACACCTACTGCGACCACTG
TAGCTGGTGGTTCCCAAAGCCGAAGAATTGGCACCCGTGGAGCGGACAAA
GGAGCCCGAGATGAATTCAGGGCGATAACACGCCAGCAGATTGCCCGCTG
CAATGAGAACGTGATCACTTTGCTTGCGAATTTCATTAACCAAGAACACT
TGATGCTGGCGCAGCACATCTTTGGAATCAGTCAGCCCGTGGAGACGATT
GTGATTAAGGCAAGCTTTCTAGACCAT

BO18267.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
IntS10-RA 1896 CG1120-PA 1..1893 17..1909 9465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
IntS10-RA 2272 CG1120-RA 101..1995 15..1909 9475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3807065..3808109 217..1261 5225 100 Plus
3L 28110227 3L 3808165..3808813 1261..1909 3245 100 Plus
3L 28110227 3L 3806810..3807011 15..216 1010 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:02:30 has no hits.

BO18267.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:11 Download gff for BO18267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1120-RA 1..1896 17..1912 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:10 Download gff for BO18267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1120-RA 93..1995 10..1913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:12 Download gff for BO18267.complete
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 103..1995 17..1911 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:11 Download gff for BO18267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1120-RA 93..1995 10..1913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:56 Download gff for BO18267.complete
Subject Subject Range Query Range Percent Splice Strand
IntS10-RA 103..1995 17..1911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:56 Download gff for BO18267.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3806812..3807011 17..216 100 -> Plus
3L 3807065..3808109 217..1261 100 -> Plus
3L 3808166..3808813 1262..1911 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:12 Download gff for BO18267.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3806812..3807011 17..216 100 -> Plus
arm_3L 3807065..3808109 217..1261 100 -> Plus
arm_3L 3808166..3808813 1262..1911 99   Plus

BO18267.pep Sequence

Translation from 16 to 1927

> BO18267.pep
MPSQEENELYMVKEAQRLRKSDPCAAMAWIITAKTLYPNAFNLQYEAYLL
ERDAQNYEEAAKCFSAIATNFQNQHTELWQEINSLTNALRNENETTPEHE
FYVKMYKHLTPEVQHNIFMHTINHSADNLERIYIYILMFNKFPKSAITQA
PRLLEMLAEGMKTEPDLYQRILVEEVLPMIQNKPPELSPNLACRLYTSSL
EFYLRQIMDESDTADAWKNIFKVLMICGQMMGWEPFLPFSKHVNQNVYWE
KLVDILSGSPAGSSQVLFYATTLFIYSLHGYIRNCKLRIEDADVTHVLVE
GFMEWSPEGDGSEVPSMEPPKFSLTTAISPELSKAFLHAAQCWQLLNTDQ
FQRDFSQLMLALPLAPWISRFLFDLAIYFGHRDEANKLMADMTTQSSLVQ
SLQILSLNLMQGSMTLQGFQCILKILSELPTTQGQLLENMSLKGHRHMVF
LPLTRSALVQYCVGAIISRLSRKVFEPNVPDRLLGDILVLQQLNLLNDVL
LTQQIFNLIKQRKSFNLRTLSTYIINIDLLEELSHIWNSQQEDNFELTSS
PNSSGTPTATTVAGGSQSRRIGTRGADKGARDEFRAITRQQIARCNENVI
TLLANFINQEHLMLAQHIFGISQPVETIVIKASFLDH

BO18267.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
IntS10-PA 631 CG1120-PA 1..631 1..631 3266 100 Plus