Clone Sequence Records
BO18268.3prime Sequence
787 bp (750 high quality bases) assembled on 2006-10-13
> BO18268.3prime
ATGGTCTAGAAAGCTTGCTATTCTACGTTTCACTGCTAGTAATGGTTGCT
CAGCCAGCTTCATAGTGGTATTGTCTATAAACCTAAGGTCCTTGTACAAA
AAGGTGGTACTCAGCATATAATTTCGTAATATTTTAGCTAGAGCTAGCTT
TGCAGATATCAGCGAGAGTTTCCAACCTAAGCATGTTTTCTTCCCCTTCG
AAAAAGGTAAATAGGAATAAGGTGGCCTTGCTCGCTTATTTTCAGGCAGA
AAGTTATCGGGATTAAATGCATTAGCCTGTGGTCCCCAGATATCCTTATT
ACGATGAGTGTGAAAAATGTCTATCATTAAGGTTACGCCTTCTGGAATAT
AAAATCCGTTTGATAGTTGAATAGAATGGGAAGTTTGCCTTATCAGTAAT
GGAACGGCCGGTATTAAACGCATAGTCTCATGCAAAACTCGATCCAGCTT
CACTAATTTCTCCAGATCCGCATGACTGGCTTCGAATTCTCCTCCTGAAG
GAAACACCTCTGCTAGCTCCTCAAATACATTATCCTGGTATTTAGGAAAC
ATTGCCATCAGGATAAGCACATTGTTGACTGTTATAGATAAAGTATCGGA
TGCGGCAAATATGATATTAGAAAATTCCCCCATTACGTCGTCATAAGAAA
GTTCTCCGATTCTCACAAGATTGAGAATGCGGTCAATTAGTGCCGGTTCT
GAGCTATTATCTGTGCTACTCAGCTTTTTGTCTATTATGTCTTTGATGAA
TGCATTTGACTGCGTTGCGGCCTCTAGTCGTCGTTTT
BO18268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15807-PA | 1464 | Cyp313a5-RA | 693..1461 | 787..19 | 3845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-RA | 1561 | CG15807-RA | 730..1498 | 787..19 | 3845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12233059..12233630 | 167..738 | 2830 | 99.7 | Plus |
3R | 32079331 | 3R | 12232857..12233019 | 19..181 | 815 | 100 | Plus |
3R | 32079331 | 3R | 12233685..12233733 | 739..787 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:30:42 has no hits.
BO18268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:43 Download gff for
BO18268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15807-PA | 693..1464 | 15..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:21 Download gff for
BO18268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 730..1506 | 10..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:40 Download gff for
BO18268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 730..1506 | 10..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:40 Download gff for
BO18268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12232849..12233014 | 10..176 | 97 | <- | Plus |
3R | 12233069..12233630 | 177..738 | 100 | <- | Plus |
3R | 12233685..12233733 | 739..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:21 Download gff for
BO18268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8058571..8058736 | 10..176 | 97 | <- | Plus |
arm_3R | 8058791..8059352 | 177..738 | 100 | <- | Plus |
arm_3R | 8059407..8059455 | 739..787 | 100 | | Plus |
BO18268.5prime Sequence
837 bp (730 high quality bases) assembled on 2006-10-13
> BO18268.5prime
GAAGTTATCAGTCGACATGCTTACGCTGCAAATTTTTGAGGCATTTGCAA
TCATTTTATGTGTATACTTTCTATGGAGTCGAAGAAGATTTTATATTATG
ATGCTAAAGTTACCAGGACCAATGGGCTTTCCGTTTATCGGACTTGCCTT
TGAGTACATTCGCCTAAAACGTAAGATACGCCTACGTACCATTTTATTTA
AAATATATGGAAAAACGGTATTGACTTGGATTGGCTTAACTCCCGTCCTG
GTGACCTGTGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTG
CAGCAACAGGAGTTCTGTGGTGGACAAGGCCATTTCATCATGTTTAGGAC
TGGGCCTTCTGACCCTAAAGAATAATCATTGGAATGAACGACGAAAACTT
TTGTTACCATCGTTTAAGAATAATGCTGTTCTAAGTTTTGTGCCAGTTTT
AAACAATGAAGCCAATTTCCTGGTGACCTTACTCGCGGAATTTGTCGATG
GGGGAGATATAAACTTACTTCCAGAACTCAATAAATGGTCATTCAAAATA
GCCGCTCAAATTACTATGGGTGATGAAGTGAGAAATCAAGCGAACTACCA
GAACGGAAATCTTTTGGAAAGCTACAAGGCCCTTAACAACCTAATACCCA
TTGGTGTTGTAATGCCTTGGCTCAGGAACAAGTATCTTGGAAAGCTATTT
AGCTATGAAAAACGACGACTAGAGGCCGCAACGCAGTCAAATGCATTCAT
CAAAGACATAATAGACAAAAAGCTGAGTAGCACAGATAATAGCTCAGAAC
CGGCACTAATTGACCGCATTCTCAATTCTGTGAGAAT
BO18268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15807-PA | 1464 | Cyp313a5-RA | 1..821 | 17..837 | 4030 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-RA | 1561 | CG15807-RA | 38..858 | 17..837 | 4060 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12234233..12234437 | 375..171 | 995 | 99 | Minus |
3R | 32079331 | 3R | 12233992..12234177 | 557..372 | 930 | 100 | Minus |
3R | 32079331 | 3R | 12234489..12234647 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 12233685..12233811 | 757..631 | 635 | 100 | Minus |
3R | 32079331 | 3R | 12233551..12233630 | 837..758 | 370 | 97.5 | Minus |
3R | 32079331 | 3R | 12233869..12233941 | 630..558 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:36:00 has no hits.
BO18268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:45 Download gff for
BO18268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15807-PA | 1..821 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:48 Download gff for
BO18268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 29..858 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:33 Download gff for
BO18268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 29..858 | 9..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:33 Download gff for
BO18268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12233551..12233630 | 758..837 | 97 | <- | Minus |
3R | 12233685..12233811 | 631..757 | 100 | <- | Minus |
3R | 12233869..12233941 | 558..630 | 100 | <- | Minus |
3R | 12233992..12234177 | 372..557 | 100 | <- | Minus |
3R | 12234237..12234437 | 171..371 | 99 | <- | Minus |
3R | 12234494..12234656 | 9..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:48 Download gff for
BO18268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8059714..8059899 | 372..557 | 100 | <- | Minus |
arm_3R | 8059273..8059352 | 758..837 | 97 | <- | Minus |
arm_3R | 8059407..8059533 | 631..757 | 100 | <- | Minus |
arm_3R | 8059591..8059663 | 558..630 | 100 | <- | Minus |
arm_3R | 8059959..8060159 | 171..371 | 99 | <- | Minus |
arm_3R | 8060216..8060378 | 9..170 | 98 | | Minus |
BO18268.complete Sequence
1495 bp assembled on 2006-10-11
GenBank Submission: FJ634367
> BO18268.complete
GAAGTTATCAGTCGACATGCTTACGCTGCAAATTTTTGAGGCATTTGCAA
TCATTTTATGTGTATACTTTCTATGGAGTCGAAGAAGATTTTATATTATG
ATGCTAAAGTTACCAGGACCAATGGGCTTTCCGTTTATCGGACTTGCCTT
TGAGTACATTCGCCTAAAACGTAAGATACGCCTACGTACCATTTTATTTA
AAATATATGGAAAAACGGTATTGACTTGGATTGGCTTAACTCCCGTCCTG
GTGACCTGTGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTG
CAGCAACAGGAGTTCTGTGGTGGACAAGGCCATTTCATCATGTTTAGGAC
TGGGCCTTCTGACCCTAAAGAATAATCATTGGAATGAACGACGAAAACTT
TTGTTACCATCGTTTAAGAATAATGCTGTTCTAAGTTTTGTGCCAGTTTT
AAACAATGAAGCCAATTTCCTGGTGACCTTACTCGCGGAATTTGTCGATG
GGGGAGATATAAACTTACTTCCAGAACTCAATAAATGGTCATTCAAAATA
GCCGCTCAAATTACTATGGGTGATGAAGTGAGAAATCAAGCGAACTACCA
GAACGGAAATCTTTTGGAAAGCTACAAGGCCCTTAACAACCTAATACCCA
TTGGTGTTGTAATGCCTTGGCTCAGGAACAAGTATCTTGGAAAGCTATTT
AGCTATGAAAAACGACGACTAGAGGCCGCAACGCAGTCAAATGCATTCAT
CAAAGACATAATAGACAAAAAGCTGAGTAGCACAGATAATAGCTCAGAAC
CGGCACTAATTGACCGCATTCTCAATCTTGTGAGAATCGGAGAACTTTCT
TATGACGACGTAATGGGGGAATTTTCTAATATCATATTTGCCGCATCCGA
TACTTTATCTATAACAGTCAACAATGTGCTTATCCTGATGGCAATGTTTC
CTAAATACCAGGATAATGTATTTGAGGAGCTAGCAGAGGTGTTTCCTTCA
GGAGGAGAATTCGAAGCCAGTCATGCGGATCTGGAGAAATTAGTGAAGCT
GGATCGAGTTTTGCATGAGACTATGCGTTTAATACCGGCCGTTCCATTAC
TGATAAGGCAAACTTCCCATTCTATTCAACTATCAAACGGATTTTATATT
CCAGAAGGCGTAACCTTAATGATAGACATTTTTCACACTCATCGTAATAA
GGATATCTGGGGACCACAGGCTAATGCATTTAATCCCGATAACTTTCTGC
CTGAAAATAAGCGAGCAAGGCCACCTTATTCCTATTTACCTTTTTCGAAG
GGGAAGAAAACATGCTTAGGTTGGAAACTCTCGCTGATATCTGCAAAGCT
AGCTCTAGCTAAAATATTACGAAATTATATGCTGAGTACCACCTTTTTGT
ACAAGGACCTTAGGTTTATAGACAATACCACTATGAAGCTGGCTGAGCAA
CCATTACTAGCAGTGAAACGTAGAATAGCAAGCTTTCTAGACCAT
BO18268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-RA | 1464 | CG15807-PA | 1..1461 | 17..1477 | 7290 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-RA | 1561 | CG15807-RA | 38..1498 | 17..1477 | 7290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12233059..12233630 | 1329..758 | 2830 | 99.7 | Minus |
3R | 32079331 | 3R | 12234233..12234437 | 375..171 | 995 | 99 | Minus |
3R | 32079331 | 3R | 12233992..12234177 | 557..372 | 930 | 100 | Minus |
3R | 32079331 | 3R | 12232857..12233019 | 1477..1315 | 815 | 100 | Minus |
3R | 32079331 | 3R | 12234489..12234647 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 12233685..12233811 | 757..631 | 635 | 100 | Minus |
3R | 32079331 | 3R | 12233869..12233941 | 630..558 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:34:43 has no hits.
BO18268.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:02 Download gff for
BO18268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 1..1464 | 17..1481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:04 Download gff for
BO18268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 29..1502 | 9..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:09 Download gff for
BO18268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 38..1498 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:02 Download gff for
BO18268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 29..1502 | 9..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:44 Download gff for
BO18268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp313a5-RA | 38..1498 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:44 Download gff for
BO18268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12233992..12234177 | 372..557 | 100 | <- | Minus |
3R | 12234237..12234437 | 171..371 | 99 | <- | Minus |
3R | 12234494..12234647 | 17..170 | 100 | | Minus |
3R | 12232855..12233014 | 1320..1479 | 98 | <- | Minus |
3R | 12233069..12233630 | 758..1319 | 100 | <- | Minus |
3R | 12233685..12233811 | 631..757 | 100 | <- | Minus |
3R | 12233869..12233941 | 558..630 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:09 Download gff for
BO18268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8058577..8058736 | 1320..1479 | 98 | <- | Minus |
arm_3R | 8058791..8059352 | 758..1319 | 100 | <- | Minus |
arm_3R | 8059407..8059533 | 631..757 | 100 | <- | Minus |
arm_3R | 8059591..8059663 | 558..630 | 100 | <- | Minus |
arm_3R | 8059714..8059899 | 372..557 | 100 | <- | Minus |
arm_3R | 8059959..8060159 | 171..371 | 99 | <- | Minus |
arm_3R | 8060216..8060369 | 17..170 | 100 | | Minus |
BO18268.pep Sequence
Translation from 16 to 1495
> BO18268.pep
MLTLQIFEAFAIILCVYFLWSRRRFYIMMLKLPGPMGFPFIGLAFEYIRL
KRKIRLRTILFKIYGKTVLTWIGLTPVLVTCEPKILEDIFTSPNCSNRSS
VVDKAISSCLGLGLLTLKNNHWNERRKLLLPSFKNNAVLSFVPVLNNEAN
FLVTLLAEFVDGGDINLLPELNKWSFKIAAQITMGDEVRNQANYQNGNLL
ESYKALNNLIPIGVVMPWLRNKYLGKLFSYEKRRLEAATQSNAFIKDIID
KKLSSTDNSSEPALIDRILNLVRIGELSYDDVMGEFSNIIFAASDTLSIT
VNNVLILMAMFPKYQDNVFEELAEVFPSGGEFEASHADLEKLVKLDRVLH
ETMRLIPAVPLLIRQTSHSIQLSNGFYIPEGVTLMIDIFHTHRNKDIWGP
QANAFNPDNFLPENKRARPPYSYLPFSKGKKTCLGWKLSLISAKLALAKI
LRNYMLSTTFLYKDLRFIDNTTMKLAEQPLLAVKRRIASFLDH
BO18268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp313a5-PA | 487 | CG15807-PA | 1..487 | 1..487 | 2503 | 100 | Plus |
Cyp313a1-PA | 492 | CG3360-PA | 1..491 | 1..486 | 1201 | 45.8 | Plus |
Cyp313a3-PA | 492 | CG10093-PA | 1..491 | 1..486 | 1200 | 46.6 | Plus |
Cyp313a2-PB | 493 | CG10094-PB | 1..491 | 1..486 | 1120 | 44.4 | Plus |
Cyp313a4-PA | 494 | CG6802-PA | 1..493 | 1..486 | 1052 | 39.1 | Plus |