Clone BO18268 Report

Search the DGRC for BO18268

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCyp313a5-RA
Protein status:BO18268.pep: validated full length
Sequenced Size:1495

Clone Sequence Records

BO18268.3prime Sequence

787 bp (750 high quality bases) assembled on 2006-10-13

> BO18268.3prime
ATGGTCTAGAAAGCTTGCTATTCTACGTTTCACTGCTAGTAATGGTTGCT
CAGCCAGCTTCATAGTGGTATTGTCTATAAACCTAAGGTCCTTGTACAAA
AAGGTGGTACTCAGCATATAATTTCGTAATATTTTAGCTAGAGCTAGCTT
TGCAGATATCAGCGAGAGTTTCCAACCTAAGCATGTTTTCTTCCCCTTCG
AAAAAGGTAAATAGGAATAAGGTGGCCTTGCTCGCTTATTTTCAGGCAGA
AAGTTATCGGGATTAAATGCATTAGCCTGTGGTCCCCAGATATCCTTATT
ACGATGAGTGTGAAAAATGTCTATCATTAAGGTTACGCCTTCTGGAATAT
AAAATCCGTTTGATAGTTGAATAGAATGGGAAGTTTGCCTTATCAGTAAT
GGAACGGCCGGTATTAAACGCATAGTCTCATGCAAAACTCGATCCAGCTT
CACTAATTTCTCCAGATCCGCATGACTGGCTTCGAATTCTCCTCCTGAAG
GAAACACCTCTGCTAGCTCCTCAAATACATTATCCTGGTATTTAGGAAAC
ATTGCCATCAGGATAAGCACATTGTTGACTGTTATAGATAAAGTATCGGA
TGCGGCAAATATGATATTAGAAAATTCCCCCATTACGTCGTCATAAGAAA
GTTCTCCGATTCTCACAAGATTGAGAATGCGGTCAATTAGTGCCGGTTCT
GAGCTATTATCTGTGCTACTCAGCTTTTTGTCTATTATGTCTTTGATGAA
TGCATTTGACTGCGTTGCGGCCTCTAGTCGTCGTTTT

BO18268.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15807-PA 1464 Cyp313a5-RA 693..1461 787..19 3845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-RA 1561 CG15807-RA 730..1498 787..19 3845 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12233059..12233630 167..738 2830 99.7 Plus
3R 32079331 3R 12232857..12233019 19..181 815 100 Plus
3R 32079331 3R 12233685..12233733 739..787 245 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:30:42 has no hits.

BO18268.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:43 Download gff for BO18268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15807-PA 693..1464 15..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:21 Download gff for BO18268.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 730..1506 10..787 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:40 Download gff for BO18268.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 730..1506 10..787 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:40 Download gff for BO18268.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12232849..12233014 10..176 97 <- Plus
3R 12233069..12233630 177..738 100 <- Plus
3R 12233685..12233733 739..787 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:21 Download gff for BO18268.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8058571..8058736 10..176 97 <- Plus
arm_3R 8058791..8059352 177..738 100 <- Plus
arm_3R 8059407..8059455 739..787 100   Plus

BO18268.5prime Sequence

837 bp (730 high quality bases) assembled on 2006-10-13

> BO18268.5prime
GAAGTTATCAGTCGACATGCTTACGCTGCAAATTTTTGAGGCATTTGCAA
TCATTTTATGTGTATACTTTCTATGGAGTCGAAGAAGATTTTATATTATG
ATGCTAAAGTTACCAGGACCAATGGGCTTTCCGTTTATCGGACTTGCCTT
TGAGTACATTCGCCTAAAACGTAAGATACGCCTACGTACCATTTTATTTA
AAATATATGGAAAAACGGTATTGACTTGGATTGGCTTAACTCCCGTCCTG
GTGACCTGTGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTG
CAGCAACAGGAGTTCTGTGGTGGACAAGGCCATTTCATCATGTTTAGGAC
TGGGCCTTCTGACCCTAAAGAATAATCATTGGAATGAACGACGAAAACTT
TTGTTACCATCGTTTAAGAATAATGCTGTTCTAAGTTTTGTGCCAGTTTT
AAACAATGAAGCCAATTTCCTGGTGACCTTACTCGCGGAATTTGTCGATG
GGGGAGATATAAACTTACTTCCAGAACTCAATAAATGGTCATTCAAAATA
GCCGCTCAAATTACTATGGGTGATGAAGTGAGAAATCAAGCGAACTACCA
GAACGGAAATCTTTTGGAAAGCTACAAGGCCCTTAACAACCTAATACCCA
TTGGTGTTGTAATGCCTTGGCTCAGGAACAAGTATCTTGGAAAGCTATTT
AGCTATGAAAAACGACGACTAGAGGCCGCAACGCAGTCAAATGCATTCAT
CAAAGACATAATAGACAAAAAGCTGAGTAGCACAGATAATAGCTCAGAAC
CGGCACTAATTGACCGCATTCTCAATTCTGTGAGAAT

BO18268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15807-PA 1464 Cyp313a5-RA 1..821 17..837 4030 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-RA 1561 CG15807-RA 38..858 17..837 4060 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12234233..12234437 375..171 995 99 Minus
3R 32079331 3R 12233992..12234177 557..372 930 100 Minus
3R 32079331 3R 12234489..12234647 175..17 795 100 Minus
3R 32079331 3R 12233685..12233811 757..631 635 100 Minus
3R 32079331 3R 12233551..12233630 837..758 370 97.5 Minus
3R 32079331 3R 12233869..12233941 630..558 365 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:36:00 has no hits.

BO18268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:45 Download gff for BO18268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15807-PA 1..821 17..837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:48 Download gff for BO18268.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 29..858 9..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:33 Download gff for BO18268.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 29..858 9..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:33 Download gff for BO18268.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12233551..12233630 758..837 97 <- Minus
3R 12233685..12233811 631..757 100 <- Minus
3R 12233869..12233941 558..630 100 <- Minus
3R 12233992..12234177 372..557 100 <- Minus
3R 12234237..12234437 171..371 99 <- Minus
3R 12234494..12234656 9..170 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:48 Download gff for BO18268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8059714..8059899 372..557 100 <- Minus
arm_3R 8059273..8059352 758..837 97 <- Minus
arm_3R 8059407..8059533 631..757 100 <- Minus
arm_3R 8059591..8059663 558..630 100 <- Minus
arm_3R 8059959..8060159 171..371 99 <- Minus
arm_3R 8060216..8060378 9..170 98   Minus

BO18268.complete Sequence

1495 bp assembled on 2006-10-11

GenBank Submission: FJ634367

> BO18268.complete
GAAGTTATCAGTCGACATGCTTACGCTGCAAATTTTTGAGGCATTTGCAA
TCATTTTATGTGTATACTTTCTATGGAGTCGAAGAAGATTTTATATTATG
ATGCTAAAGTTACCAGGACCAATGGGCTTTCCGTTTATCGGACTTGCCTT
TGAGTACATTCGCCTAAAACGTAAGATACGCCTACGTACCATTTTATTTA
AAATATATGGAAAAACGGTATTGACTTGGATTGGCTTAACTCCCGTCCTG
GTGACCTGTGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTG
CAGCAACAGGAGTTCTGTGGTGGACAAGGCCATTTCATCATGTTTAGGAC
TGGGCCTTCTGACCCTAAAGAATAATCATTGGAATGAACGACGAAAACTT
TTGTTACCATCGTTTAAGAATAATGCTGTTCTAAGTTTTGTGCCAGTTTT
AAACAATGAAGCCAATTTCCTGGTGACCTTACTCGCGGAATTTGTCGATG
GGGGAGATATAAACTTACTTCCAGAACTCAATAAATGGTCATTCAAAATA
GCCGCTCAAATTACTATGGGTGATGAAGTGAGAAATCAAGCGAACTACCA
GAACGGAAATCTTTTGGAAAGCTACAAGGCCCTTAACAACCTAATACCCA
TTGGTGTTGTAATGCCTTGGCTCAGGAACAAGTATCTTGGAAAGCTATTT
AGCTATGAAAAACGACGACTAGAGGCCGCAACGCAGTCAAATGCATTCAT
CAAAGACATAATAGACAAAAAGCTGAGTAGCACAGATAATAGCTCAGAAC
CGGCACTAATTGACCGCATTCTCAATCTTGTGAGAATCGGAGAACTTTCT
TATGACGACGTAATGGGGGAATTTTCTAATATCATATTTGCCGCATCCGA
TACTTTATCTATAACAGTCAACAATGTGCTTATCCTGATGGCAATGTTTC
CTAAATACCAGGATAATGTATTTGAGGAGCTAGCAGAGGTGTTTCCTTCA
GGAGGAGAATTCGAAGCCAGTCATGCGGATCTGGAGAAATTAGTGAAGCT
GGATCGAGTTTTGCATGAGACTATGCGTTTAATACCGGCCGTTCCATTAC
TGATAAGGCAAACTTCCCATTCTATTCAACTATCAAACGGATTTTATATT
CCAGAAGGCGTAACCTTAATGATAGACATTTTTCACACTCATCGTAATAA
GGATATCTGGGGACCACAGGCTAATGCATTTAATCCCGATAACTTTCTGC
CTGAAAATAAGCGAGCAAGGCCACCTTATTCCTATTTACCTTTTTCGAAG
GGGAAGAAAACATGCTTAGGTTGGAAACTCTCGCTGATATCTGCAAAGCT
AGCTCTAGCTAAAATATTACGAAATTATATGCTGAGTACCACCTTTTTGT
ACAAGGACCTTAGGTTTATAGACAATACCACTATGAAGCTGGCTGAGCAA
CCATTACTAGCAGTGAAACGTAGAATAGCAAGCTTTCTAGACCAT

BO18268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-RA 1464 CG15807-PA 1..1461 17..1477 7290 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-RA 1561 CG15807-RA 38..1498 17..1477 7290 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12233059..12233630 1329..758 2830 99.7 Minus
3R 32079331 3R 12234233..12234437 375..171 995 99 Minus
3R 32079331 3R 12233992..12234177 557..372 930 100 Minus
3R 32079331 3R 12232857..12233019 1477..1315 815 100 Minus
3R 32079331 3R 12234489..12234647 175..17 795 100 Minus
3R 32079331 3R 12233685..12233811 757..631 635 100 Minus
3R 32079331 3R 12233869..12233941 630..558 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:34:43 has no hits.

BO18268.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:02 Download gff for BO18268.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 1..1464 17..1481 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:04 Download gff for BO18268.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 29..1502 9..1482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:09 Download gff for BO18268.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 38..1498 17..1479 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:02 Download gff for BO18268.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 29..1502 9..1482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:44 Download gff for BO18268.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp313a5-RA 38..1498 17..1479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:44 Download gff for BO18268.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12233992..12234177 372..557 100 <- Minus
3R 12234237..12234437 171..371 99 <- Minus
3R 12234494..12234647 17..170 100   Minus
3R 12232855..12233014 1320..1479 98 <- Minus
3R 12233069..12233630 758..1319 100 <- Minus
3R 12233685..12233811 631..757 100 <- Minus
3R 12233869..12233941 558..630 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:09 Download gff for BO18268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8058577..8058736 1320..1479 98 <- Minus
arm_3R 8058791..8059352 758..1319 100 <- Minus
arm_3R 8059407..8059533 631..757 100 <- Minus
arm_3R 8059591..8059663 558..630 100 <- Minus
arm_3R 8059714..8059899 372..557 100 <- Minus
arm_3R 8059959..8060159 171..371 99 <- Minus
arm_3R 8060216..8060369 17..170 100   Minus

BO18268.pep Sequence

Translation from 16 to 1495

> BO18268.pep
MLTLQIFEAFAIILCVYFLWSRRRFYIMMLKLPGPMGFPFIGLAFEYIRL
KRKIRLRTILFKIYGKTVLTWIGLTPVLVTCEPKILEDIFTSPNCSNRSS
VVDKAISSCLGLGLLTLKNNHWNERRKLLLPSFKNNAVLSFVPVLNNEAN
FLVTLLAEFVDGGDINLLPELNKWSFKIAAQITMGDEVRNQANYQNGNLL
ESYKALNNLIPIGVVMPWLRNKYLGKLFSYEKRRLEAATQSNAFIKDIID
KKLSSTDNSSEPALIDRILNLVRIGELSYDDVMGEFSNIIFAASDTLSIT
VNNVLILMAMFPKYQDNVFEELAEVFPSGGEFEASHADLEKLVKLDRVLH
ETMRLIPAVPLLIRQTSHSIQLSNGFYIPEGVTLMIDIFHTHRNKDIWGP
QANAFNPDNFLPENKRARPPYSYLPFSKGKKTCLGWKLSLISAKLALAKI
LRNYMLSTTFLYKDLRFIDNTTMKLAEQPLLAVKRRIASFLDH

BO18268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp313a5-PA 487 CG15807-PA 1..487 1..487 2503 100 Plus
Cyp313a1-PA 492 CG3360-PA 1..491 1..486 1201 45.8 Plus
Cyp313a3-PA 492 CG10093-PA 1..491 1..486 1200 46.6 Plus
Cyp313a2-PB 493 CG10094-PB 1..491 1..486 1120 44.4 Plus
Cyp313a4-PA 494 CG6802-PA 1..493 1..486 1052 39.1 Plus