Clone Sequence Records
BO18269.3prime Sequence
768 bp (716 high quality bases) assembled on 2006-10-13
> BO18269.3prime
ATGGTCTAGAAAGCTTGCGAAGTCGTACGAGTCGGTCTCATCATCGCCCT
TGCGTACCTTGAAGATTAATCTGTAGATGATTCCGGCCAACAGGCCGCCG
GCAATGGGACCCACCCAGTAAACCCAGTGATAGGTCCAGACGCCCTGCAC
TACGGCGGGACCAAAGGACCGGGCGGGATTCATGCTGGCACCGCTCAGTT
TGATTGCACACAAATGGCCAGCGGCGATGGCCAAACCAACAGCCAGTGGC
GCTGATCCCTTGATATCCTGGCGTCCAGGATCCGAAACAGCCTTGACCAC
GAAAACCAAAATAAAGGTGATCAGCGCTTCGATCAGCACCGCCTGTGCAC
AGTTCAGGGAGGGATCAAAGGAGGATACTCCCAGGTCGCCACCAGCCACT
CCATCGAGTGCCACCTTTATCACAGCCGCTCCAGCAATGGCGCCCACGCA
TTGGACGATGATGTAGAAGGCAGCCTTCAGAATGCTGATCTCACCAACGA
TCAGGAATCCAAGGGTGACCGCCGGATTAATGTGACAGCCACTGAGGTGG
CCCAAGCCCTGGGCGATGGTGGCCACCGTCAAGCCAAAGGTGAATGCGAT
TTGTGGTACACTTCCGCTCGTCGTGCTGCCAACGCCGACGAAGATCAAGA
AAAATGTGCCCACCAGTTCGCCGAGCAGCATGCGCCAGATTTTCTTGTTC
TCGGTTATGTCGGCAACGCCAACGAATTTCGACATTTCTGTTTTTCTCGA
CCATGTCGACTGATAACT
BO18269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9023-PA | 738 | Drip-RA | 10..735 | 744..19 | 3630 | 100 | Minus |
| CG9023-PB | 738 | Drip-RB | 10..735 | 744..19 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drip-RB | 1444 | CG9023-RB | 277..1011 | 754..19 | 3655 | 99.9 | Minus |
| Drip-RA | 1745 | CG9023-RA | 578..1312 | 754..19 | 3655 | 99.9 | Minus |
| Drip-RE | 1180 | CG9023-RE | 27..747 | 739..19 | 3605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11412632..11412988 | 205..561 | 1785 | 100 | Plus |
| 2R | 25286936 | 2R | 11412389..11412574 | 19..204 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 11421257..11421439 | 558..740 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:03:58 has no hits.
BO18269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:45 Download gff for
BO18269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9023-PB | 1..738 | 15..754 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:09 Download gff for
BO18269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RA | 571..1315 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:12 Download gff for
BO18269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RA | 571..1315 | 15..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:12 Download gff for
BO18269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11421258..11421436 | 559..737 | 100 | <- | Plus |
| 2R | 11412385..11412574 | 15..204 | 98 | <- | Plus |
| 2R | 11412632..11412985 | 205..558 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:09 Download gff for
BO18269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7299890..7300079 | 15..204 | 98 | <- | Plus |
| arm_2R | 7300137..7300490 | 205..558 | 100 | <- | Plus |
| arm_2R | 7308763..7308941 | 559..737 | 100 | <- | Plus |
BO18269.5prime Sequence
767 bp (708 high quality bases) assembled on 2006-10-13
> BO18269.5prime
GAAGTTATCAGTCGACATGGTCGAGAAAACAGAAATGTCGAAATTCGTTG
GCGTTGCCGACATAACCGAGAACAAGAAAATCTGGCGCATGCTGCTCGGC
GAACTGGTGGGCACATTTTTCTTGATCTTCGTCGGCGTTGGCAGCACGAC
GAGCGGAAGTGTACCACAAATCGCATTCACCTTTGGCTTGACGGTGGCCA
CCATCGCCCAGGGCTTGGGCCACCTCAGTGGCTGTCACATTAATCCGGCG
GTCACCCTTGGATTCCTGATCGTTGGTGAGATCAGCATTCTGAAGGCTGC
CTTCTACATCATCGTCCAATGCGTGGGCGCCATTGCTGGAGCGGCTGTGA
TAAAGGTGGCACTCGATGGAGTGGCTGGTGGCGACCTGGGAGTATCCTCC
TTTGATCCCTCCCTGAACTGTGCACAGGCGGTGCTGATCGAAGCGCTGAT
CACCTTTATTTTGGTTTTCGTGGTCAAGGCTGTTTCGGATCCTGGACGCC
AGGATATCAAGGGATCAGCGCCACTGGCTGTTGGTTTGGCCATCGCCGCT
GGCCATTTGTGTGCAATCAAACTGAGCGGTGCCAGCATGAATCCCGCCCG
GTCCTTTGGTCCCGCCGTAGTGCAGGGCGTCTGGACCTATCACTGGGTTT
ACTGGGTGGGTCCCATTGCCGGCGGCCTGTTGGCCGGAATCATCTACAGA
TTAATCTTCAAGGTACGCAAGGGCGATGATGAGACCGACTCGTACGACTT
CGCAAGCTTTCTAGACC
BO18269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9023-PA | 738 | Drip-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
| CG9023-PB | 738 | Drip-RB | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drip-RB | 1444 | CG9023-RB | 277..1011 | 17..751 | 3675 | 100 | Plus |
| Drip-RA | 1745 | CG9023-RA | 578..1312 | 17..751 | 3675 | 100 | Plus |
| Drip-RE | 1180 | CG9023-RE | 27..747 | 31..751 | 3605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11412632..11412988 | 565..209 | 1785 | 100 | Minus |
| 2R | 25286936 | 2R | 11412389..11412574 | 751..566 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 11421257..11421439 | 212..30 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:04:18 has no hits.
BO18269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:46 Download gff for
BO18269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9023-PB | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:11 Download gff for
BO18269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RA | 571..1315 | 9..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:17 Download gff for
BO18269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RA | 571..1315 | 9..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:17 Download gff for
BO18269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11412385..11412574 | 566..755 | 98 | <- | Minus |
| 2R | 11412632..11412985 | 212..565 | 100 | <- | Minus |
| 2R | 11421258..11421436 | 33..211 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:11 Download gff for
BO18269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7299890..7300079 | 566..755 | 98 | <- | Minus |
| arm_2R | 7300137..7300490 | 212..565 | 100 | <- | Minus |
| arm_2R | 7308763..7308941 | 33..211 | 100 | <- | Minus |
BO18269.complete Sequence
769 bp assembled on 2006-10-11
GenBank Submission: FJ634368
> BO18269.complete
GAAGTTATCAGTCGACATGGTCGAGAAAACAGAAATGTCGAAATTCGTTG
GCGTTGCCGACATAACCGAGAACAAGAAAATCTGGCGCATGCTGCTCGGC
GAACTGGTGGGCACATTTTTCTTGATCTTCGTCGGCGTTGGCAGCACGAC
GAGCGGAAGTGTACCACAAATCGCATTCACCTTTGGCTTGACGGTGGCCA
CCATCGCCCAGGGCTTGGGCCACCTCAGTGGCTGTCACATTAATCCGGCG
GTCACCCTTGGATTCCTGATCGTTGGTGAGATCAGCATTCTGAAGGCTGC
CTTCTACATCATCGTCCAATGCGTGGGCGCCATTGCTGGAGCGGCTGTGA
TAAAGGTGGCACTCGATGGAGTGGCTGGTGGCGACCTGGGAGTATCCTCC
TTTGATCCCTCCCTGAACTGTGCACAGGCGGTGCTGATCGAAGCGCTGAT
CACCTTTATTTTGGTTTTCGTGGTCAAGGCTGTTTCGGATCCTGGACGCC
AGGATATCAAGGGATCAGCGCCACTGGCTGTTGGTTTGGCCATCGCCGCT
GGCCATTTGTGTGCAATCAAACTGAGCGGTGCCAGCATGAATCCCGCCCG
GTCCTTTGGTCCCGCCGTAGTGCAGGGCGTCTGGACCTATCACTGGGTTT
ACTGGGTGGGTCCCATTGCCGGCGGCCTGTTGGCCGGAATCATCTACAGA
TTAATCTTCAAGGTACGCAAGGGCGATGATGAGACCGACTCGTACGACTT
CGCAAGCTTTCTAGACCAT
BO18269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drip-RB | 738 | CG9023-PB | 1..735 | 17..751 | 3675 | 100 | Plus |
| Drip-RA | 738 | CG9023-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
| Drip-RD | 729 | CG9023-PD | 7..726 | 32..751 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drip-RB | 1444 | CG9023-RB | 277..1011 | 17..751 | 3675 | 100 | Plus |
| Drip-RA | 1745 | CG9023-RA | 578..1312 | 17..751 | 3675 | 100 | Plus |
| Drip-RE | 1180 | CG9023-RE | 27..747 | 31..751 | 3605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11412632..11412988 | 565..209 | 1785 | 100 | Minus |
| 2R | 25286936 | 2R | 11412389..11412574 | 751..566 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 11421257..11421439 | 212..30 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:15:48 has no hits.
BO18269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:03 Download gff for
BO18269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RB | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:22 Download gff for
BO18269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RB | 253..987 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:52 Download gff for
BO18269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RA | 578..1312 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:05 Download gff for
BO18269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RB | 246..990 | 9..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:17 Download gff for
BO18269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RA | 578..1312 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:17 Download gff for
BO18269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11412387..11412574 | 566..753 | 98 | <- | Minus |
| 2R | 11412632..11412985 | 212..565 | 100 | <- | Minus |
| 2R | 11421258..11421436 | 33..211 | 100 | <- | Minus |
| 2R | 11429053..11429068 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:52 Download gff for
BO18269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7299892..7300079 | 566..753 | 98 | <- | Minus |
| arm_2R | 7300137..7300490 | 212..565 | 100 | <- | Minus |
| arm_2R | 7308763..7308941 | 33..211 | 100 | <- | Minus |
| arm_2R | 7316558..7316573 | 17..32 | 100 | | Minus |
BO18269.pep Sequence
Translation from 16 to 769
> BO18269.pep
MVEKTEMSKFVGVADITENKKIWRMLLGELVGTFFLIFVGVGSTTSGSVP
QIAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIV
QCVGAIAGAAVIKVALDGVAGGDLGVSSFDPSLNCAQAVLIEALITFILV
FVVKAVSDPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPA
VVQGVWTYHWVYWVGPIAGGLLAGIIYRLIFKVRKGDDETDSYDFASFLD
H
BO18269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drip-PB | 245 | CG9023-PB | 1..245 | 1..245 | 1244 | 100 | Plus |
| Drip-PA | 245 | CG9023-PA | 1..245 | 1..245 | 1244 | 100 | Plus |
| Drip-PD | 242 | CG9023-PD | 3..242 | 6..245 | 1220 | 100 | Plus |
| Drip-PC | 243 | CG9023-PC | 4..243 | 6..245 | 1220 | 100 | Plus |
| Drip-PE | 239 | CG9023-PE | 1..239 | 7..245 | 1215 | 100 | Plus |
