Clone Sequence Records
BO18276.3prime Sequence
404 bp (404 high quality bases) assembled on 2006-10-13
> BO18276.3prime
ATGGTCTAGAAAGCTTGCGTGGTGCAGGGTGTAGGCCAGGGGAGCGGAGT
GCACCACCGACTTGACGAGGGGAGCTGAGTGGACCAGAGGCACAGAGTGG
ACGACTGGAGCGGCGTGGACAACGGGCACGGAGTGAACCACTGGAGCAGC
GTGGACGGCAACGGCGGGATGGGAGTAGGTGGTGGTCTTCACGATGGGAG
CAACCACTGGCTGCACCACCGCCTTGCTGTGCACCTGGGTGATGCTCTGG
TGGGAAACCGCCGAGGGAGCAGAGTGCACCACCGATCCAACCTTGGCCAG
AACGGGCTCGTGCACCACATGGTGAGTCTCGATGAGACCAGCACTGGCGG
TGGCGACCAGGAGAGCGATGACAGCAACAAATTTGAACATGTCGACTGAT
AACT
BO18276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-PA | 375 | CG13041-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
CG13060-PA | 396 | CG13060-RA | 19..296 | 372..95 | 1315 | 98.9 | Minus |
CG13060-PA | 396 | CG13060-RA | 331..393 | 81..19 | 240 | 95.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-RA | 513 | CG13041-RA | 68..439 | 390..19 | 1860 | 100 | Minus |
CG13060-RA | 539 | CG13060-RA | 71..473 | 390..9 | 1435 | 91.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16319028..16319387 | 19..378 | 1800 | 100 | Plus |
3L | 28110227 | 3L | 16320004..16320281 | 372..95 | 1345 | 98.9 | Minus |
3L | 28110227 | 3L | 16320316..16320388 | 81..9 | 275 | 91.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:07:53 has no hits.
BO18276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:49 Download gff for
BO18276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:40 Download gff for
BO18276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 63..443 | 14..395 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:50 Download gff for
BO18276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 63..443 | 14..395 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:50 Download gff for
BO18276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16319024..16319387 | 14..378 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:40 Download gff for
BO18276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16312124..16312487 | 14..378 | 99 | <- | Plus |
BO18276.5prime Sequence
404 bp (404 high quality bases) assembled on 2006-10-13
> BO18276.5prime
GAAGTTATCAGTCGACATGTTCAAATTTGTTGCTGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCCATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCACGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
AGTCGTCCACTCTGTGCCTCTGGTCCACTCAGCTCCCCTCGTCAAGTCGG
TGGTGCACTCCGCTCCCCTGGCCTACACCCTGCACCACGCAAGCTTTCTA
GACC
BO18276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-PA | 375 | CG13041-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
CG13060-PA | 396 | CG13060-RA | 19..296 | 35..312 | 1315 | 98.9 | Plus |
CG13060-PA | 396 | CG13060-RA | 331..393 | 326..388 | 240 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-RA | 513 | CG13041-RA | 68..439 | 17..388 | 1860 | 100 | Plus |
CG13060-RA | 539 | CG13060-RA | 71..473 | 17..398 | 1435 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16319028..16319387 | 388..29 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 16320004..16320281 | 35..312 | 1345 | 98.9 | Plus |
3L | 28110227 | 3L | 16320316..16320388 | 326..398 | 275 | 91.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:10 has no hits.
BO18276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:50 Download gff for
BO18276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:19 Download gff for
BO18276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 63..443 | 12..393 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:31 Download gff for
BO18276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 63..443 | 12..393 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:31 Download gff for
BO18276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16319024..16319387 | 29..393 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:19 Download gff for
BO18276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16312124..16312487 | 29..393 | 99 | <- | Minus |
BO18276.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ634369
> BO18276.complete
GAAGTTATCAGTCGACATGTTCAAATTTGTTGCTGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCCATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCACGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
AGTCGTCCACTCTGTGCCTCTGGTCCACTCAGCTCCCCTCGTCAAGTCGG
TGGTGCACTCCGCTCCCCTGGCCTACACCCTGCACCACGCAAGCTTTCTA
GACCAT
BO18276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-RA | 375 | CG13041-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
CG13060-RA | 396 | CG13060-PA | 1..296 | 17..312 | 1375 | 97.6 | Plus |
CG13060-RA | 396 | CG13060-PA | 331..393 | 326..388 | 270 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-RA | 513 | CG13041-RA | 68..439 | 17..388 | 1860 | 100 | Plus |
CG13060-RA | 539 | CG13060-RA | 71..366 | 17..312 | 1375 | 97.6 | Plus |
CG13060-RA | 539 | CG13060-RA | 401..473 | 326..398 | 275 | 91.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16319028..16319387 | 388..29 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 16320004..16320281 | 35..312 | 1345 | 98.9 | Plus |
3L | 28110227 | 3L | 16320316..16320388 | 326..398 | 275 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:37:13 has no hits.
BO18276.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:12 Download gff for
BO18276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:04 Download gff for
BO18276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 57..437 | 12..393 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:20 Download gff for
BO18276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 73..439 | 22..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:12 Download gff for
BO18276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 57..437 | 12..393 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:23 Download gff for
BO18276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13041-RA | 73..439 | 22..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:23 Download gff for
BO18276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16319026..16319391 | 22..390 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:20 Download gff for
BO18276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16312126..16312491 | 22..390 | 98 | | Minus |
BO18276.pep Sequence
Translation from 16 to 406
> BO18276.pep
MFKFVAVIALLVATASAGLIETHHVVHEPVLAKVGSVVHSAPSAVSHQSI
TQVHSKAVVQPVVAPIVKTTTYSHPAVAVHAAPVVHSVPVVHAAPVVHSV
PLVHSAPLVKSVVHSAPLAYTLHHASFLDH
BO18276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13041-PA | 124 | CG13041-PA | 1..124 | 1..124 | 621 | 100 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..131 | 1..124 | 584 | 90.8 | Plus |
CG13044-PA | 155 | CG13044-PA | 1..146 | 1..125 | 268 | 48.4 | Plus |
CG13040-PB | 185 | CG13040-PB | 1..145 | 1..125 | 240 | 45.9 | Plus |
CG13040-PA | 185 | CG13040-PA | 1..145 | 1..125 | 240 | 45.9 | Plus |