Clone Sequence Records
BO18277.3prime Sequence
747 bp (582 high quality bases) assembled on 2006-10-13
> BO18277.3prime
ATGGTCTAGAAAGCTTGCCTTGTACAGACGCTCGATGACTTTGGCATATT
TGGCGTGGACAATATTCCGCCTGATTTTCAGCGTGGGACCCAGCTCTCCG
GTGGCCACGGAAAACTCATGAGCAATGAGGGCAAACTTTTGCACCTTTTG
AGCATTTGAAATGGCATACTTATTCGCTCGCTTGATGCCCTCTTCGATGG
CTTCCAGGAGCTTAGGTTTGGCGGTGATCTCCAAGGTAGCTGCCAGAGCG
GCAGTATCATTGGGCAGCTGGAGATCGGCTGGAATGTTTAGGAGTTCGGA
GAGACGGGTCTCATGGATATCCAGGTCCCGCAGCCATTCGATTGTCTCCT
CACGCAGAGCATCCAGTGGAATTCCAGTCTTTGCATCGCATTTCGTCTTC
AAGGACAGCAGGACGGTGAGATACTTTCGATGATCGCCGATAAGTAGCAC
ATTGCTCACGCAGGGAAGCTCCTTTTTGATCAGCTCCTCGATGTGCACAG
GTGGAATATTCTCCCCGCCAGCGGTGATGATCAGCTCCTTGAGTCGACCG
GATATAATTAGATTACCCTTGGGATCGATGTAGCCCAAGTCACCGGAATG
CAGCCAGCCATCCTCTTTGACCGTTTCCTCAGTCTTATCCGGCAGTCCCA
AGTAACCCATGAAAACCAAGCGACCCCCGCATCAAAATCTCTCCCTGACC
ATTGCAATCGGGTTCGTGGATCTTCAAGTGACTTCCCTCGCACGCTT
BO18277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-PA | 2046 | CG4500-RA | 1316..2043 | 747..19 | 3480 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-RA | 2206 | CG4500-RA | 1347..2074 | 747..19 | 3545 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14028509..14029236 | 747..19 | 3475 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:09:01 has no hits.
BO18277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:51 Download gff for
BO18277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-PA | 1316..2046 | 15..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:41:46 Download gff for
BO18277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 1347..2082 | 11..747 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:34:06 Download gff for
BO18277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 1347..2082 | 11..747 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:34:06 Download gff for
BO18277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14028509..14029244 | 11..747 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:41:46 Download gff for
BO18277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14028509..14029244 | 11..747 | 98 | | Minus |
BO18277.5prime Sequence
875 bp (693 high quality bases) assembled on 2006-10-13
> BO18277.5prime
GAAGTTATCAGTCGACATGAACGACCTCAAGCCAGCTACAAGTTATAGGA
GCACCTCGCTCCACGACGCCGTCAAGCTGCGCCTGGATGAGCCATCATCC
TTTTCACAGACAGTCCCGCCACAGACGATTCCAGAATTCTTCAAGGAATC
GTGCGAGAAGTATTCGGATCTGCCCGCCTTGGTGTGGGAAACCCCAGGAT
CTGGGAACGATGGTTGGACCACTCTTACGTTTGGCGAGTACCAGGAGCGC
GTGGAGCAAGCGGCGCTGATGCTGCTGAGCGTGGGAGTCGAGGAACGCAG
TTCGGTGGGCATTCTGGCCTTCAATTGTCCCGAGTGGTTCTTCGCGGAAT
TTGGTGCTTTGAGAGCTGGAGCTGTTGTAGCCGGAGTTTATCCGAGCAAT
TCGGCTGAGGCCGTTCATCACGTCCTAGCCACAGGAGAGTCATCCGTTTG
CGTAGTGGACGACGCCCAGCAGATGGCCAAGCTGAGGGCCATCAAGGAAC
GCCTGCCACGTCTTAAGGCTGTAATCCAGTTGCACGGACCATTTGAAGCC
TTTGTCGATCACGAGCCCGGTTACTTTAGCTGGCAGAAACTCCAGGAGCA
GACCTTCTCCAGCGAGCTGAAAGAGGAACTGCTGGCCCGTGAGAGCCGGA
TTCGTGCCAACGAGTGTGCCATGCTGATCTTCACCTCGGGCACAGTGGGT
ATGCCAAAGGCAGTGATGCTATCCCACGACAACCTCGTGTTCGACACAAA
GTCCGCAGCCGCACACATGCAAGATATCCAAGTTGGCAAGGAGAGTTTTG
TGAGCTACCTTCCGCTGAGCCATGGGGCTGCCCAAATTTTCGATGTGTTC
CTGGGTCTTTCCATGCCGGATGCGT
BO18277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-PA | 2046 | CG4500-RA | 1..860 | 17..875 | 4210 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-RA | 2206 | CG4500-RA | 31..891 | 16..875 | 4250 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14027031..14027891 | 16..875 | 4225 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:58:14 has no hits.
BO18277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:51 Download gff for
BO18277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-PA | 1..860 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:16:24 Download gff for
BO18277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 23..891 | 8..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:44:49 Download gff for
BO18277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 23..891 | 8..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:44:49 Download gff for
BO18277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14027023..14027891 | 8..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:16:24 Download gff for
BO18277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14027023..14027891 | 8..875 | 99 | | Plus |
BO18277.complete Sequence
2077 bp assembled on 2007-03-23
GenBank Submission: FJ634370
> BO18277.complete
GAAGTTATCAGTCGACATGAACGACCTCAAGCCAGCTACAAGTTATAGGA
GCACCTCGCTCCACGACGCCGTCAAGCTGCGCCTGGATGAGCCATCATCC
TTTTCACAGACAGTCCCGCCACAGACGATTCCAGAATTCTTCAAGGAATC
GTGCGAGAAGTATTCGGATCTGCCCGCCTTGGTGTGGGAAACCCCAGGAT
CTGGGAACGATGGTTGGACCACTCTTACGTTTGGCGAGTACCAGGAGCGC
GTGGAGCAAGCGGCGCTGATGCTGCTGAGCGTGGGAGTCGAGGAACGCAG
TTCGGTGGGCATTCTGGCCTTCAATTGTCCCGAGTGGTTCTTCGCGGAAT
TTGGTGCTTTGAGAGCTGGAGCTGTTGTAGCCGGAGTTTATCCGAGCAAT
TCGGCTGAGGCCGTTCATCACGTCCTAGCCACAGGAGAGTCATCCGTTTG
CGTAGTGGACGACGCCCAGCAGATGGCCAAGCTGAGGGCCATCAAGGAAC
GCCTGCCACGTCTTAAGGCTGTAATCCAGTTGCACGGACCATTTGAAGCC
TTTGTCGATCACGAGCCCGGTTACTTTAGCTGGCAGAAACTCCAGGAGCA
GACCTTCTCCAGCGAGCTGAAAGAGGAACTGCTGGCCCGTGAGAGCCGGA
TTCGTGCCAACGAGTGTGCCATGCTGATCTTCACCTCGGGCACAGTGGGT
ATGCCAAAGGCAGTGATGCTATCCCACGACAACCTCGTGTTCGACACAAA
GTCCGCAGCCGCACACATGCAAGATATCCAAGTTGGCAAGGAGAGTTTTG
TGAGCTACCTTCCGCTGAGCCATGTGGCTGCCCAGATTTTCGATGTGTTC
CTGGGTCTTTCCCATGCCGGATGCGTCACATTTGCCGACAAGGACGCACT
GAAGGGAACGCTGATCAAGACCTTTCGCAAGGCGAGGCCAACGAAAATGT
TCGGCGTTCCGCGCGTCTTCGAGAAACTTCAAGAGCGTCTGGTGGCCGCG
GAGGCCAAGGCGAGACCTTACTCCAGATTACTTCTAGCAAGAGCTAGAGC
TGCTGTCGCTGAACACCAAACAACGCTGATGGCGGGGAAGTCCCCATCGA
TTTATGGCAACGCTAAATATTGGCTTGCGTGTCGAGTAGTAAAGCCAATA
CGTGAAATGATAGGTGTGGACAACTGCCGTGTTTTCTTCACCGGCGGAGC
ACCAACGTCGGAAGAGCTGAAGCAATTCTTCCTGGGACTGGACATCGCCT
TGGGCGAGTGCTATGGAATGTCGGAGACTAGTGGTGCTATCACCTTGAAT
GTCGATATAAGCAATCTGTATAGCGCTGGTCAAGCGTGCGAGGGAGTCAC
TTTGAAGATCCACGAACCCGATTGCAATGGTCAGGGAGAGATTCTGATGC
GGGGTCGCTTGGTTTTCATGGGCTACTTGGGACTGCCGGATAAGACTGAG
GAAACGGTCAAAGAGGATGGCTGGCTGCATTCCGGTGACTTGGGCTACAT
CGATCCCAAGGGTAATCTAATTATATCCGGTCGACTCAAGGAGCTGATCA
TCACCGCTGGCGGGGAGAATATTCCACCTGTGCACATCGAGGAGCTGATC
AAAAAGGAGCTTCCCTGCGTGAGCAATGTGCTACTTATCGGCGATCATCG
AAAGTATCTCACCGTCCTGCTGTCCTTGAAGACGAAATGCGATGCAAAGA
CTGGAATTCCACTGGATGCTCTGCGTGAGGAGACAATCGAATGGCTGCGG
GACCTGGATATCCATGAGACCCGTCTCTCCGAACTCCTAAACATTCCAGC
CGATCTCCAGCTGCCCAATGATACTGCCGCTCTGGCAGCTACCTTGGAGA
TCACCGCCAAACCTAAGCTCCTGGAAGCCATCGAAGAGGGCATCAAGCGA
GCGAATAAGTATGCCATTTCAAATGCTCAAAAGGTGCAAAAGTTTGCCCT
CATTGCTCATGAGTTTTCCGTGGCCACCGGAGAGCTGGGTCCCACGCTGA
AAATCAGGCGGAATATTGTCCACGCCAAATATGCCAAAGTCATCGAGCGT
CTGTACAAGGCAAGCTTTCTAGACCAT
BO18277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-RA | 2046 | CG4500-PA | 1..2043 | 17..2059 | 10215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-RA | 2206 | CG4500-RA | 31..2074 | 16..2059 | 10220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14027031..14028102 | 16..1087 | 5360 | 100 | Plus |
| 2L | 23513712 | 2L | 14028263..14029236 | 1086..2059 | 4870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:06:17 has no hits.
BO18277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:12 Download gff for
BO18277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 1..2046 | 17..2063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:11 Download gff for
BO18277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 14..2073 | 8..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:04 Download gff for
BO18277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 32..2074 | 17..2061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:12 Download gff for
BO18277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 14..2073 | 8..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:34 Download gff for
BO18277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4500-RA | 32..2074 | 17..2061 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:34 Download gff for
BO18277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14027032..14028101 | 17..1086 | 100 | -> | Plus |
| 2L | 14028264..14029236 | 1087..2061 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:04 Download gff for
BO18277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14027032..14028101 | 17..1086 | 100 | -> | Plus |
| arm_2L | 14028264..14029236 | 1087..2061 | 99 | | Plus |
BO18277.pep Sequence
Translation from 16 to 2077
> BO18277.pep
MNDLKPATSYRSTSLHDAVKLRLDEPSSFSQTVPPQTIPEFFKESCEKYS
DLPALVWETPGSGNDGWTTLTFGEYQERVEQAALMLLSVGVEERSSVGIL
AFNCPEWFFAEFGALRAGAVVAGVYPSNSAEAVHHVLATGESSVCVVDDA
QQMAKLRAIKERLPRLKAVIQLHGPFEAFVDHEPGYFSWQKLQEQTFSSE
LKEELLARESRIRANECAMLIFTSGTVGMPKAVMLSHDNLVFDTKSAAAH
MQDIQVGKESFVSYLPLSHVAAQIFDVFLGLSHAGCVTFADKDALKGTLI
KTFRKARPTKMFGVPRVFEKLQERLVAAEAKARPYSRLLLARARAAVAEH
QTTLMAGKSPSIYGNAKYWLACRVVKPIREMIGVDNCRVFFTGGAPTSEE
LKQFFLGLDIALGECYGMSETSGAITLNVDISNLYSAGQACEGVTLKIHE
PDCNGQGEILMRGRLVFMGYLGLPDKTEETVKEDGWLHSGDLGYIDPKGN
LIISGRLKELIITAGGENIPPVHIEELIKKELPCVSNVLLIGDHRKYLTV
LLSLKTKCDAKTGIPLDALREETIEWLRDLDIHETRLSELLNIPADLQLP
NDTAALAATLEITAKPKLLEAIEEGIKRANKYAISNAQKVQKFALIAHEF
SVATGELGPTLKIRRNIVHAKYAKVIERLYKASFLDH
BO18277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4500-PA | 681 | CG4500-PA | 1..681 | 1..681 | 3495 | 100 | Plus |
| bgm-PC | 666 | CG4501-PC | 14..665 | 2..680 | 1522 | 44.2 | Plus |
| bgm-PA | 666 | CG4501-PA | 14..665 | 2..680 | 1522 | 44.2 | Plus |
| CG3961-PD | 654 | CG3961-PD | 52..651 | 36..681 | 373 | 25.8 | Plus |
| CG3961-PE | 666 | CG3961-PE | 64..663 | 36..681 | 373 | 25.8 | Plus |
