Clone Sequence Records
BO18283.3prime Sequence
762 bp (692 high quality bases) assembled on 2006-10-13
> BO18283.3prime
ATGGTCTAGAAAGCTTGCGAGGGTGACATCGTGCTCTTCGTCGAGCATTT
CAACAAATGCGCGTGGCACCAGACCCTTCAATAGACCCTGTTTTCCGTAC
ATGTAATCCTCGTTTACTGGTGAGCACTCCGTCACGAAGATCACCTCATT
GGCGCTCAAATTAAGCTCGGTGTGATCCTTGGCGTCGTAGGAGCAAAGGA
CGCGTGCCCTCTGCATCTGATCCGTGCTGACGTGCATGGGCTGATTAGGC
TTGTGGCCGGTGGCAGCCATATTGGCAGAGTGATTGTTGCCAGGACCACG
GGCTGCGGCTCCGGACGATATGTTGGACTTGCTGGCACTGGCCTCGTTCA
CGTCGAGCGGAATGTATGGCGTGGGGCCTCCCAAGTTGGCCAGTTCACGC
TGCAGCTGCTCCATGACATCGCCGCACTGCTTGTAGTAGCGCACTTGCGT
CTGGATGAAGGCGTGCAAGTGGCGCAAATGAGATGCCTGCGATGTGCTGA
TCCCGTCCAGCAGCAGCTTGGTAATCTCCGCCTGCCGGTCGAACTCGGCC
TGAGCCACCCGCAAGTCCCGTTCCGCCTGTTCCAAGACGGCCTCTGGCGA
GATGCCATCTTTCGATTGCTGACCCAGCATGCTGCGCGCTTTCTTCACCC
TGTTCTTGCAGGCGTCCAGATCCAGGCGCTTGGTCTCCAGGATGCCTCGC
TCCTTGCCAATTGTCTTCCTTTCGCCGTCTAGGAACTTGCGCAACGGCTG
TGTAAAGCAAAT
BO18283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9834-PA | 1173 | endoB-RA | 427..1170 | 762..19 | 3695 | 99.8 | Minus |
| CG9834-PB | 1137 | endoB-RB | 576..1134 | 577..19 | 2795 | 100 | Minus |
| CG9834-PB | 1137 | endoB-RB | 427..576 | 762..613 | 725 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RA | 2226 | CG9834-RA | 540..1283 | 762..19 | 3705 | 99.9 | Minus |
| EndoB-RB | 2190 | CG9834-RB | 689..1247 | 577..19 | 2795 | 100 | Minus |
| EndoB-RC | 2190 | CG9834-RC | 540..916 | 762..386 | 1870 | 99.7 | Minus |
| EndoB-RB | 2190 | CG9834-RB | 540..689 | 762..613 | 735 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19308571..19308813 | 143..385 | 1215 | 100 | Plus |
| 2R | 25286936 | 2R | 19309393..19309585 | 386..578 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 19309816..19309965 | 613..762 | 735 | 99.3 | Plus |
| 2R | 25286936 | 2R | 19308390..19308517 | 19..146 | 640 | 100 | Plus |
| 2R | 25286936 | 2R | 19309662..19309699 | 576..613 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:20:29 has no hits.
BO18283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:56 Download gff for
BO18283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9834-PA | 427..1173 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:37 Download gff for
BO18283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 540..1295 | 6..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:39 Download gff for
BO18283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RA | 540..1295 | 6..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:39 Download gff for
BO18283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19308378..19308515 | 6..144 | 96 | <- | Plus |
| 2R | 19308573..19308813 | 145..385 | 100 | <- | Plus |
| 2R | 19309393..19309583 | 386..576 | 100 | <- | Plus |
| 2R | 19309663..19309698 | 577..612 | 100 | <- | Plus |
| 2R | 19309816..19309965 | 613..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:37 Download gff for
BO18283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15195883..15196020 | 6..144 | 96 | <- | Plus |
| arm_2R | 15196078..15196318 | 145..385 | 100 | <- | Plus |
| arm_2R | 15196898..15197088 | 386..576 | 100 | <- | Plus |
| arm_2R | 15197168..15197203 | 577..612 | 100 | <- | Plus |
| arm_2R | 15197321..15197470 | 613..762 | 99 | | Plus |
BO18283.5prime Sequence
807 bp (695 high quality bases) assembled on 2006-10-13
> BO18283.5prime
GAAGTTATCAGTCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGA
ACCTGGTGAAGGAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACG
GAGGAGAAACTGGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCA
GAATCTCGCCGAGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAG
TGCGCGACACAGAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAA
GACTTCATCTTCGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAA
CCTAGAGCACCTGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGC
AGGATTTACCCTATGGTCAGGCTCTGATCAAGGTCGGCCAAGCGGAACAG
AAACTGGGCCAGTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTT
TACACAGCCGTTGCGCAAGTTCCTAGACGGCGAAATGAAGACAATTGGCA
AGGAGCGAGGCATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAG
AACAGGGTGAAGAAAGCGCGCAGCATGCTGGGTCAGCAATCGAAAGATGG
CATCTCGCCAGAGGCCGTCTTGGAACAGGCGGAACGGGACTTGCGGGTGG
CTCAGGCCGAGTTCGACCGGCAGGCGGAGATTACCAAGCTGCTGCTGGAC
GGGATCAGCCCATCGCAAGCATCTCATTTGCGCCACTTGCACGCCTTTCA
TCCAGACGCAAGTGCGCTACTACAAGCAGTGCGGCGATGTCATGGAGCAG
CTGCAGC
BO18283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9834-PA | 1173 | endoB-RA | 1..731 | 17..747 | 3605 | 99.7 | Plus |
| CG9834-PB | 1137 | endoB-RB | 1..576 | 17..592 | 2880 | 100 | Plus |
| CG9834-PB | 1137 | endoB-RB | 576..695 | 628..747 | 550 | 98.3 | Plus |
| CG9834-PA | 1173 | endoB-RA | 730..790 | 747..807 | 305 | 100 | Plus |
| CG9834-PB | 1137 | endoB-RB | 694..754 | 747..807 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RC | 2190 | CG9834-RC | 114..903 | 17..807 | 3900 | 99.6 | Plus |
| EndoB-RA | 2226 | CG9834-RA | 114..903 | 17..807 | 3900 | 99.6 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 114..689 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19309816..19310316 | 592..92 | 2505 | 100 | Minus |
| 2R | 25286936 | 2R | 19309406..19309585 | 807..627 | 825 | 98.3 | Minus |
| 2R | 25286936 | 2R | 19310475..19310552 | 94..17 | 390 | 100 | Minus |
| 2R | 25286936 | 2R | 19309662..19309699 | 629..592 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:45:08 has no hits.
BO18283.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:56 Download gff for
BO18283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9834-PA | 1..790 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:42 Download gff for
BO18283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 114..903 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:56 Download gff for
BO18283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RA | 114..903 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:56 Download gff for
BO18283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19309406..19309583 | 629..807 | 98 | <- | Minus |
| 2R | 19309663..19309698 | 593..628 | 100 | <- | Minus |
| 2R | 19309816..19310313 | 95..592 | 100 | <- | Minus |
| 2R | 19310475..19310552 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:42 Download gff for
BO18283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15196911..15197088 | 629..807 | 98 | <- | Minus |
| arm_2R | 15197168..15197203 | 593..628 | 100 | <- | Minus |
| arm_2R | 15197321..15197818 | 95..592 | 100 | <- | Minus |
| arm_2R | 15197980..15198057 | 17..94 | 100 | | Minus |
BO18283.complete Sequence
1204 bp assembled on 2006-10-11
GenBank Submission: FJ634371
> BO18283.complete
GAAGTTATCAGTCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGA
ACCTGGTGAAGGAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACG
GAGGAGAAACTGGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCA
GAATCTCGCCGAGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAG
TGCGCGACACAGAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAA
GACTTCATCTTCGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAA
CCTAGAGCACCTGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGC
AGGATTTACCCTATGGTCAGGCTCTGATCAAGGTCGGCCAAGCGGAACAG
AAACTGGGCCAGTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTT
TACACAGCCGTTGCGCAAGTTCCTAGACGGCGAAATGAAGACAATTGGCA
AGGAGCGAGGCATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAG
AACAGGGTGAAGAAAGCGCGCAGCATGCTGGGTCAGCAATCGAAAGATGG
CATCTCGCCAGAGGCCGTCTTGGAACAGGCGGAACGGGACTTGCGGGTGG
CTCAGGCCGAGTTCGACCGGCAGGCGGAGATTACCAAGCTGCTGCTGGAC
GGGATCAGCACATCGCAGGCATCTCATTTGCGCCACTTGCACGCCTTCAT
CCAGACGCAAGTGCGCTACTACAAGCAGTGCGGCGATGTCATGGAGCAGC
TGCAGCGTGAACTGGCCAACTTGGGAGGCCCCACGCCATACATTCCGCTC
GACGTGAACGAGGCCAGTGCCAGCAAGTCCAACATATCGTCCGGAGCCGC
AGCCCGTGGTCCTGGCAACAATCACTCTGCCAATATGGCTGCCACCGGCC
ACAAGCCTAATCAGCCCATGCACGTCAGCACGGATCAGATGCAGAGGGCA
CGCGTCCTTTGCTCCTACGACGCCAAGGATCACACCGAGCTTAATTTGAG
CGCCAATGAGGTGATCTTCGTGACGGAGTGCTCACCAGTAAACGAGGATT
ACATGTACGGAAAACAGGGTCTATTGAAGGGTCTGGTGCCACGCGCATTT
GTTGAAATGCTCGACGAAGAGCACGATGTCACCCTCGCAAGCTTTCTAGA
CCAT
BO18283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RA | 1173 | CG9834-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
| EndoB-RC | 1137 | CG9834-PC | 1..803 | 17..819 | 4015 | 100 | Plus |
| EndoB-RD | 1101 | CG9834-PD | 1..576 | 17..592 | 2880 | 100 | Plus |
| EndoB-RC | 1137 | CG9834-PC | 1009..1134 | 1061..1186 | 630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RA | 2226 | CG9834-RA | 114..1283 | 17..1186 | 5850 | 100 | Plus |
| EndoB-RC | 2190 | CG9834-RC | 114..916 | 17..819 | 4015 | 100 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 114..689 | 17..592 | 2880 | 100 | Plus |
| EndoB-RC | 2190 | CG9834-RC | 1122..1247 | 1061..1186 | 630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19309816..19310316 | 592..92 | 2505 | 100 | Minus |
| 2R | 25286936 | 2R | 19308571..19308813 | 1062..820 | 1215 | 100 | Minus |
| 2R | 25286936 | 2R | 19309393..19309585 | 819..627 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 19308390..19308517 | 1186..1059 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 19310475..19310552 | 94..17 | 390 | 100 | Minus |
| 2R | 25286936 | 2R | 19309662..19309699 | 629..592 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:03:28 has no hits.
BO18283.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:06 Download gff for
BO18283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 1..1173 | 17..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:07 Download gff for
BO18283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 141..1322 | 17..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:23 Download gff for
BO18283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 114..1283 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:06 Download gff for
BO18283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 141..1322 | 17..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:16 Download gff for
BO18283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RA | 114..1283 | 17..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:16 Download gff for
BO18283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19308388..19308515 | 1061..1188 | 98 | <- | Minus |
| 2R | 19308573..19308813 | 820..1060 | 100 | <- | Minus |
| 2R | 19309393..19309583 | 629..819 | 100 | <- | Minus |
| 2R | 19309663..19309698 | 593..628 | 100 | <- | Minus |
| 2R | 19309816..19310313 | 95..592 | 100 | <- | Minus |
| 2R | 19310475..19310552 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:23 Download gff for
BO18283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15197980..15198057 | 17..94 | 100 | | Minus |
| arm_2R | 15195893..15196020 | 1061..1188 | 98 | <- | Minus |
| arm_2R | 15196078..15196318 | 820..1060 | 100 | <- | Minus |
| arm_2R | 15196898..15197088 | 629..819 | 100 | <- | Minus |
| arm_2R | 15197168..15197203 | 593..628 | 100 | <- | Minus |
| arm_2R | 15197321..15197818 | 95..592 | 100 | <- | Minus |
BO18283.pep Sequence
Translation from 16 to 1204
> BO18283.pep
MNINLPNFNVKNLVKEAGSTISRVVQLTEEKLGTTERTEYDLHFQNLAER
ADVTKTWTEKIVRDTESVLIPNPQNRVEDFIFEKIEKSKPKRLSNLEHLA
LDMIEAGGDFGQDLPYGQALIKVGQAEQKLGQCEHDFIATSGICFTQPLR
KFLDGEMKTIGKERGILETKRLDLDACKNRVKKARSMLGQQSKDGISPEA
VLEQAERDLRVAQAEFDRQAEITKLLLDGISTSQASHLRHLHAFIQTQVR
YYKQCGDVMEQLQRELANLGGPTPYIPLDVNEASASKSNISSGAAARGPG
NNHSANMAATGHKPNQPMHVSTDQMQRARVLCSYDAKDHTELNLSANEVI
FVTECSPVNEDYMYGKQGLLKGLVPRAFVEMLDEEHDVTLASFLDH
BO18283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-PA | 390 | CG9834-PA | 1..390 | 1..390 | 2006 | 100 | Plus |
| EndoB-PB | 378 | CG9834-PB | 1..378 | 1..390 | 1924 | 96.9 | Plus |
| EndoB-PC | 378 | CG9834-PC | 1..378 | 1..390 | 1561 | 81.9 | Plus |
| EndoB-PD | 366 | CG9834-PD | 1..366 | 1..390 | 1479 | 78.8 | Plus |
| EndoA-PC | 369 | CG14296-PC | 10..361 | 21..381 | 222 | 23.4 | Plus |
