Clone Sequence Records
BO18285.3prime Sequence
671 bp (614 high quality bases) assembled on 2006-10-13
> BO18285.3prime
ATGGTCTAGAAAGCTTGCTTCAAACTGCTTCTTCAGTTTGGCCAGTTGGA
TGAGGAATTCATCACGAACGGCCCGCCTCTCGTCGAGTTTTTCCAGTGAC
ACCAGCTGCTCACACTGCCGTGCAATCTCGGCCAGCGTTTCCCGATCCTC
CTGGGTATTCGGGGTCTCTCCATAGGTGGCACTCACCGCAGAGATTTCCC
CACCAAAACGCTGGAAGTAGTCAGCCACACCACCAGGCGCATTCAGATGG
GCTGTCTCCAGGGATCCTAGCAGGGCATATCGCAATCCCAAGCCCTGGCT
GAGAACTCGATCCACATCGGCCACGCTGAGGATACCGGAGCCCACCAGGC
GCCACACCTCGTTCAGAATGGCATACTGAATCCGATTGGTGGCGAAGCCC
TGAATCTCTCTTTTTAAAGTTACCGGACGTTGGCCCAGGCTGAGCATTAG
GTCACGGGTTCGCTCCACCGCACTCGGGGATGTCCAGGGAGCTGGGACAA
TCTCTACCAGGGGTATAAAATACGGCGGGTTCAGTGGATGAGCCACTAGC
ATCTGTTGTCTCTTTTGCAGACCCTCGCTGTACAGCGATGGCATAAAGGT
GCTCGTGGAACTGGCCACCACTGTCTGCTCCCTCGAGCACCTCATCCAAC
TGCGAGTACAGACTCTTCTTC
BO18285.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-PA | 948 | CG10131-RA | 333..945 | 631..19 | 3065 | 100 | Minus |
CG10131-PA | 948 | CG10131-RA | 294..334 | 671..631 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-RA | 1058 | CG10131-RA | 305..956 | 671..19 | 3225 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14630383..14630921 | 557..19 | 2695 | 100 | Minus |
2R | 25286936 | 2R | 14630214..14630331 | 671..553 | 530 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:00:17 has no hits.
BO18285.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:58 Download gff for
BO18285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-PA | 294..948 | 18..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:54 Download gff for
BO18285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 305..956 | 19..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:56 Download gff for
BO18285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 305..956 | 19..671 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:56 Download gff for
BO18285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14630214..14630331 | 553..671 | 98 | -> | Minus |
2R | 14630388..14630921 | 19..552 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:54 Download gff for
BO18285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10517719..10517836 | 553..671 | 98 | -> | Minus |
arm_2R | 10517893..10518426 | 19..552 | 100 | | Minus |
BO18285.5prime Sequence
712 bp (709 high quality bases) assembled on 2006-10-13
> BO18285.5prime
GAAGTTATCAGTCGACATGAGCAGCCAAAAGATTGGGATCGTGGGCAGTG
GACTGATCGGCAGGGCGTGGGCGATGCTCTTTGCAGCAGCTGGCTATCGT
GTCCAACTGTATGACATCCTGGAGAGCCAGTTGGCCACTGCGCTGCAGGA
GCTGGACAAGGATTTGCATCGGCTGGAGGAGCAGAGCGCGTTGCGTGGCA
ATATACGGGCCTCGGAACAGTTTGCCCTGATCGGGGTCACCACTCGACTA
GAGGAACTCACCAGGGAGGCGGTGCACATACAGGAGTGTGTTCCCGAAGT
TTTGCATCTGAAGAAGAGTCTGTACTCGCAGTTGGATGAGCTGCTCGAGG
AGCAGACAGTGGTGGCCAGTTCCACGAGCACCTTTATGCCATCGCTGTAC
AGCGAGGGTCTGCAAAAGAGACAACAGATGCTAGTGGCTCATCCACTGAA
CCCGCCGTATTTTATACCCCTGGTAGAGATTGTCCCAGCTCCCTGGACAT
CCCCGAGTGCGGTGGAGCGAACCCGTGACCTAATGCTCAGCCTGGGCCAA
CGTCCGGTAACTTTAAAAAGAGAGATTCAGGGCTTCGCCACCAATCGGAT
TCAGTATGCCATTCTGAACGAGGTGTGGCGCCTGGTGGGCTCCGGTATCC
TCAGCGTGGCCGAAGTGGATCGAGTTCCTCAGCCAGGGCTTGGGATTGCG
ATATGCCCTGCT
BO18285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-PA | 948 | CG10131-RA | 1..661 | 17..677 | 3280 | 99.8 | Plus |
CG10131-PA | 948 | CG10131-RA | 661..695 | 678..712 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-RA | 1058 | CG10131-RA | 7..706 | 12..712 | 3450 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14629916..14630331 | 12..427 | 2065 | 99.8 | Plus |
2R | 25286936 | 2R | 14630383..14630671 | 423..712 | 1385 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:52:46 has no hits.
BO18285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:58 Download gff for
BO18285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-PA | 1..695 | 17..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:41 Download gff for
BO18285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 2..706 | 7..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:51 Download gff for
BO18285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 2..706 | 7..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:51 Download gff for
BO18285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14629911..14630331 | 7..427 | 99 | -> | Plus |
2R | 14630388..14630671 | 428..712 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:41 Download gff for
BO18285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10517893..10518176 | 428..712 | 99 | | Plus |
arm_2R | 10517416..10517836 | 7..427 | 99 | -> | Plus |
BO18285.complete Sequence
979 bp assembled on 2006-10-11
GenBank Submission: FJ634372
> BO18285.complete
GAAGTTATCAGTCGACATGAGCAGCCAAAAGATTGGGATCGTGGGCAGTG
GACTGATCGGCAGGGCGTGGGCGATGCTCTTTGCAGCAGCTGGCTATCGT
GTCCAACTGTATGACATCCTGGAGAGCCAGTTGGCCACTGCGCTGCAGGA
GCTGGACAAGGATTTGCATCGGCTGGAGGAGCAGAGCGCGTTGCGTGGCA
ATATACGGGCCTCGGAACAGTTTGCCCTGATCGGGGTCACCACTCGACTA
GAGGAACTCACCAGGGAGGCGGTGCACATACAGGAGTGTGTTCCCGAAGT
TTTGCATCTGAAGAAGAGTCTGTACTCGCAGTTGGATGAGCTGCTCGAGG
AGCAGACAGTGGTGGCCAGTTCCACGAGCACCTTTATGCCATCGCTGTAC
AGCGAGGGTCTGCAAAAGAGACAACAGATGCTAGTGGCTCATCCACTGAA
CCCGCCGTATTTTATACCCCTGGTAGAGATTGTCCCAGCTCCCTGGACAT
CCCCGAGTGCGGTGGAGCGAACCCGTGACCTAATGCTCAGCCTGGGCCAA
CGTCCGGTAACTTTAAAAAGAGAGATTCAGGGCTTCGCCACCAATCGGAT
TCAGTATGCCATTCTGAACGAGGTGTGGCGCCTGGTGGGCTCCGGTATCC
TCAGCGTGGCCGATGTGGATCGAGTTCTCAGCCAGGGCTTGGGATTGCGA
TATGCCCTGCTAGGATCCCTGGAGACAGCCCATCTGAATGCGCCTGGTGG
TGTGGCTGACTACTTCCAGCGTTTTGGTGGGGAAATCTCTGCGGTGAGTG
CCACCTATGGAGAGACCCCGAATACCCAGGAGGATCGGGAAACGCTGGCC
GAGATTGCACGGCAGTGTGAGCAGCTGGTGTCACTGGAAAAACTCGACGA
GAGGCGGGCCGTTCGTGATGAATTCCTCATCCAACTGGCCAAACTGAAGA
AGCAGTTTGAAGCAAGCTTTCTAGACCAT
BO18285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-RA | 948 | CG10131-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-RA | 1058 | CG10131-RA | 7..956 | 12..961 | 4735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14630383..14630921 | 423..961 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 14629916..14630331 | 12..427 | 2065 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:42:46 has no hits.
BO18285.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:07 Download gff for
BO18285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 1..948 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:09 Download gff for
BO18285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 1..953 | 10..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:35 Download gff for
BO18285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 12..956 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:07 Download gff for
BO18285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 1..953 | 10..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:23 Download gff for
BO18285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10131-RA | 12..956 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:23 Download gff for
BO18285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14629921..14630331 | 17..427 | 100 | -> | Plus |
2R | 14630388..14630921 | 428..963 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:35 Download gff for
BO18285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10517426..10517836 | 17..427 | 100 | -> | Plus |
arm_2R | 10517893..10518426 | 428..963 | 99 | | Plus |
BO18285.pep Sequence
Translation from 16 to 979
> BO18285.pep
MSSQKIGIVGSGLIGRAWAMLFAAAGYRVQLYDILESQLATALQELDKDL
HRLEEQSALRGNIRASEQFALIGVTTRLEELTREAVHIQECVPEVLHLKK
SLYSQLDELLEEQTVVASSTSTFMPSLYSEGLQKRQQMLVAHPLNPPYFI
PLVEIVPAPWTSPSAVERTRDLMLSLGQRPVTLKREIQGFATNRIQYAIL
NEVWRLVGSGILSVADVDRVLSQGLGLRYALLGSLETAHLNAPGGVADYF
QRFGGEISAVSATYGETPNTQEDRETLAEIARQCEQLVSLEKLDERRAVR
DEFLIQLAKLKKQFEASFLDH
BO18285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10131-PA | 315 | CG10131-PA | 1..315 | 1..315 | 1570 | 100 | Plus |
CG9914-PB | 315 | CG9914-PB | 5..312 | 3..313 | 884 | 55.9 | Plus |
CG9914-PA | 315 | CG9914-PA | 5..312 | 3..313 | 884 | 55.9 | Plus |
Mtpalpha-PB | 744 | CG4389-PB | 337..539 | 6..211 | 164 | 24.3 | Plus |
Mtpalpha-PA | 783 | CG4389-PA | 376..578 | 6..211 | 164 | 24.3 | Plus |