Clone BO18285 Report

Search the DGRC for BO18285

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG10131-RA
Protein status:BO18285.pep: validated full length
Sequenced Size:979

Clone Sequence Records

BO18285.3prime Sequence

671 bp (614 high quality bases) assembled on 2006-10-13

> BO18285.3prime
ATGGTCTAGAAAGCTTGCTTCAAACTGCTTCTTCAGTTTGGCCAGTTGGA
TGAGGAATTCATCACGAACGGCCCGCCTCTCGTCGAGTTTTTCCAGTGAC
ACCAGCTGCTCACACTGCCGTGCAATCTCGGCCAGCGTTTCCCGATCCTC
CTGGGTATTCGGGGTCTCTCCATAGGTGGCACTCACCGCAGAGATTTCCC
CACCAAAACGCTGGAAGTAGTCAGCCACACCACCAGGCGCATTCAGATGG
GCTGTCTCCAGGGATCCTAGCAGGGCATATCGCAATCCCAAGCCCTGGCT
GAGAACTCGATCCACATCGGCCACGCTGAGGATACCGGAGCCCACCAGGC
GCCACACCTCGTTCAGAATGGCATACTGAATCCGATTGGTGGCGAAGCCC
TGAATCTCTCTTTTTAAAGTTACCGGACGTTGGCCCAGGCTGAGCATTAG
GTCACGGGTTCGCTCCACCGCACTCGGGGATGTCCAGGGAGCTGGGACAA
TCTCTACCAGGGGTATAAAATACGGCGGGTTCAGTGGATGAGCCACTAGC
ATCTGTTGTCTCTTTTGCAGACCCTCGCTGTACAGCGATGGCATAAAGGT
GCTCGTGGAACTGGCCACCACTGTCTGCTCCCTCGAGCACCTCATCCAAC
TGCGAGTACAGACTCTTCTTC

BO18285.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-PA 948 CG10131-RA 333..945 631..19 3065 100 Minus
CG10131-PA 948 CG10131-RA 294..334 671..631 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-RA 1058 CG10131-RA 305..956 671..19 3225 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14630383..14630921 557..19 2695 100 Minus
2R 25286936 2R 14630214..14630331 671..553 530 98.3 Minus
Blast to na_te.dros performed on 2015-02-02 18:00:17 has no hits.

BO18285.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:58 Download gff for BO18285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-PA 294..948 18..671 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:54 Download gff for BO18285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 305..956 19..671 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:56 Download gff for BO18285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 305..956 19..671 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:56 Download gff for BO18285.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14630214..14630331 553..671 98 -> Minus
2R 14630388..14630921 19..552 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:54 Download gff for BO18285.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10517719..10517836 553..671 98 -> Minus
arm_2R 10517893..10518426 19..552 100   Minus

BO18285.5prime Sequence

712 bp (709 high quality bases) assembled on 2006-10-13

> BO18285.5prime
GAAGTTATCAGTCGACATGAGCAGCCAAAAGATTGGGATCGTGGGCAGTG
GACTGATCGGCAGGGCGTGGGCGATGCTCTTTGCAGCAGCTGGCTATCGT
GTCCAACTGTATGACATCCTGGAGAGCCAGTTGGCCACTGCGCTGCAGGA
GCTGGACAAGGATTTGCATCGGCTGGAGGAGCAGAGCGCGTTGCGTGGCA
ATATACGGGCCTCGGAACAGTTTGCCCTGATCGGGGTCACCACTCGACTA
GAGGAACTCACCAGGGAGGCGGTGCACATACAGGAGTGTGTTCCCGAAGT
TTTGCATCTGAAGAAGAGTCTGTACTCGCAGTTGGATGAGCTGCTCGAGG
AGCAGACAGTGGTGGCCAGTTCCACGAGCACCTTTATGCCATCGCTGTAC
AGCGAGGGTCTGCAAAAGAGACAACAGATGCTAGTGGCTCATCCACTGAA
CCCGCCGTATTTTATACCCCTGGTAGAGATTGTCCCAGCTCCCTGGACAT
CCCCGAGTGCGGTGGAGCGAACCCGTGACCTAATGCTCAGCCTGGGCCAA
CGTCCGGTAACTTTAAAAAGAGAGATTCAGGGCTTCGCCACCAATCGGAT
TCAGTATGCCATTCTGAACGAGGTGTGGCGCCTGGTGGGCTCCGGTATCC
TCAGCGTGGCCGAAGTGGATCGAGTTCCTCAGCCAGGGCTTGGGATTGCG
ATATGCCCTGCT

BO18285.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-PA 948 CG10131-RA 1..661 17..677 3280 99.8 Plus
CG10131-PA 948 CG10131-RA 661..695 678..712 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-RA 1058 CG10131-RA 7..706 12..712 3450 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14629916..14630331 12..427 2065 99.8 Plus
2R 25286936 2R 14630383..14630671 423..712 1385 99.3 Plus
Blast to na_te.dros performed on 2015-02-08 11:52:46 has no hits.

BO18285.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:20:58 Download gff for BO18285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-PA 1..695 17..712 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:41 Download gff for BO18285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 2..706 7..712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:51 Download gff for BO18285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 2..706 7..712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:51 Download gff for BO18285.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14629911..14630331 7..427 99 -> Plus
2R 14630388..14630671 428..712 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:41 Download gff for BO18285.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10517893..10518176 428..712 99   Plus
arm_2R 10517416..10517836 7..427 99 -> Plus

BO18285.complete Sequence

979 bp assembled on 2006-10-11

GenBank Submission: FJ634372

> BO18285.complete
GAAGTTATCAGTCGACATGAGCAGCCAAAAGATTGGGATCGTGGGCAGTG
GACTGATCGGCAGGGCGTGGGCGATGCTCTTTGCAGCAGCTGGCTATCGT
GTCCAACTGTATGACATCCTGGAGAGCCAGTTGGCCACTGCGCTGCAGGA
GCTGGACAAGGATTTGCATCGGCTGGAGGAGCAGAGCGCGTTGCGTGGCA
ATATACGGGCCTCGGAACAGTTTGCCCTGATCGGGGTCACCACTCGACTA
GAGGAACTCACCAGGGAGGCGGTGCACATACAGGAGTGTGTTCCCGAAGT
TTTGCATCTGAAGAAGAGTCTGTACTCGCAGTTGGATGAGCTGCTCGAGG
AGCAGACAGTGGTGGCCAGTTCCACGAGCACCTTTATGCCATCGCTGTAC
AGCGAGGGTCTGCAAAAGAGACAACAGATGCTAGTGGCTCATCCACTGAA
CCCGCCGTATTTTATACCCCTGGTAGAGATTGTCCCAGCTCCCTGGACAT
CCCCGAGTGCGGTGGAGCGAACCCGTGACCTAATGCTCAGCCTGGGCCAA
CGTCCGGTAACTTTAAAAAGAGAGATTCAGGGCTTCGCCACCAATCGGAT
TCAGTATGCCATTCTGAACGAGGTGTGGCGCCTGGTGGGCTCCGGTATCC
TCAGCGTGGCCGATGTGGATCGAGTTCTCAGCCAGGGCTTGGGATTGCGA
TATGCCCTGCTAGGATCCCTGGAGACAGCCCATCTGAATGCGCCTGGTGG
TGTGGCTGACTACTTCCAGCGTTTTGGTGGGGAAATCTCTGCGGTGAGTG
CCACCTATGGAGAGACCCCGAATACCCAGGAGGATCGGGAAACGCTGGCC
GAGATTGCACGGCAGTGTGAGCAGCTGGTGTCACTGGAAAAACTCGACGA
GAGGCGGGCCGTTCGTGATGAATTCCTCATCCAACTGGCCAAACTGAAGA
AGCAGTTTGAAGCAAGCTTTCTAGACCAT

BO18285.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-RA 948 CG10131-PA 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-RA 1058 CG10131-RA 7..956 12..961 4735 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14630383..14630921 423..961 2695 100 Plus
2R 25286936 2R 14629916..14630331 12..427 2065 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 06:42:46 has no hits.

BO18285.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:07 Download gff for BO18285.complete
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 1..948 17..962 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:09 Download gff for BO18285.complete
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 1..953 10..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:35 Download gff for BO18285.complete
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 12..956 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:07 Download gff for BO18285.complete
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 1..953 10..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:23 Download gff for BO18285.complete
Subject Subject Range Query Range Percent Splice Strand
CG10131-RA 12..956 17..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:23 Download gff for BO18285.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14629921..14630331 17..427 100 -> Plus
2R 14630388..14630921 428..963 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:35 Download gff for BO18285.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10517426..10517836 17..427 100 -> Plus
arm_2R 10517893..10518426 428..963 99   Plus

BO18285.pep Sequence

Translation from 16 to 979

> BO18285.pep
MSSQKIGIVGSGLIGRAWAMLFAAAGYRVQLYDILESQLATALQELDKDL
HRLEEQSALRGNIRASEQFALIGVTTRLEELTREAVHIQECVPEVLHLKK
SLYSQLDELLEEQTVVASSTSTFMPSLYSEGLQKRQQMLVAHPLNPPYFI
PLVEIVPAPWTSPSAVERTRDLMLSLGQRPVTLKREIQGFATNRIQYAIL
NEVWRLVGSGILSVADVDRVLSQGLGLRYALLGSLETAHLNAPGGVADYF
QRFGGEISAVSATYGETPNTQEDRETLAEIARQCEQLVSLEKLDERRAVR
DEFLIQLAKLKKQFEASFLDH

BO18285.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10131-PA 315 CG10131-PA 1..315 1..315 1570 100 Plus
CG9914-PB 315 CG9914-PB 5..312 3..313 884 55.9 Plus
CG9914-PA 315 CG9914-PA 5..312 3..313 884 55.9 Plus
Mtpalpha-PB 744 CG4389-PB 337..539 6..211 164 24.3 Plus
Mtpalpha-PA 783 CG4389-PA 376..578 6..211 164 24.3 Plus