Clone Sequence Records
BO18288.3prime Sequence
709 bp (666 high quality bases) assembled on 2006-10-13
> BO18288.3prime
ATGGTCTAGAAAGCTTGCACTCATTCTTACGATAGAAGGATCAAAGGGCT
GTCCTTTAAACGGCGAACCTTCGGCATCCCAGGCAGCTTTCAGGCGATCC
AGGTTTATAGCTTGGTCGGGACTTGAGGTCTGAATTTCATTTTGTTGCTT
GTCTGCTGCCAACTGCTGGACCCTAAGCTTTTCTATGGTGGCCTGGGTTT
CCTCCGGCAAATCATCTATATAGCGTTCGCATTCAATCTTCTTGGAATCG
ATTTCTGGATCACCTTCGAAGAGCCGATCCCACCAGAGCTCCTTTGCTTT
ATCGTAACTTATGATCAATCGGTTCTGATCAATTGTCCACACCGCCTCCT
TGTGTTTAATCCGCTGGCTCAGGTTTCCCTCGAGGATGATCGTCTCTGGG
CTATGCTTGCTGCTCACTTTGATGTGCTGGGCCTGAATTGAAATGTGCAG
CTTCTTCGCCGTTTGATGATCCTTGGGAAGCAGAGCCTGCACCTCCACAT
CCTTGAGGGTTTGTGACCAGCAGTGCGTTTCGAACACATCTCCGTTTTTG
TAGTCGCTGGGGGAGAACTTTGACTGCTCCTTCCCTTTTTGTGGCGGCTG
GCTCTCTATGGGTTTCATTTCCTCGTCCTGAGGACCATCTTCGCTTTCCA
GGACCACTTCTTCGACGGCAGGCGGAGCCGTTTCTCCATCATCTGCACCG
CCTTCCGCG
BO18288.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-PA | 921 | CG31251-RA | 228..918 | 709..19 | 3455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-RA | 1060 | CG31251-RA | 298..988 | 709..19 | 3455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17684155..17684561 | 303..709 | 2035 | 100 | Plus |
3R | 32079331 | 3R | 17683812..17684096 | 19..303 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:00:39 has no hits.
BO18288.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:00 Download gff for
BO18288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-PA | 228..921 | 15..709 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:55 Download gff for
BO18288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 298..995 | 10..709 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:58 Download gff for
BO18288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 298..995 | 10..709 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:58 Download gff for
BO18288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17683804..17684095 | 10..302 | 98 | <- | Plus |
3R | 17684155..17684561 | 303..709 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:55 Download gff for
BO18288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13509526..13509817 | 10..302 | 98 | <- | Plus |
arm_3R | 13509877..13510283 | 303..709 | 100 | | Plus |
BO18288.5prime Sequence
759 bp (707 high quality bases) assembled on 2006-10-13
> BO18288.5prime
GAAGTTATCAGTCGACATGGACTTTCAGCGAAACGATGCTATGCTCATGG
AAATTCTGCAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTC
GGATTTCTGCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGC
GGATAAAATAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCG
CCATGCAGCGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAA
GGCGGTGCAGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGT
CCTGGAAAGCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGA
GCCAGCCGCCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGAC
TACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAA
GGATGTGGAGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGA
AGCTGCACATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCAT
AGCCCAGAGACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACA
CAAGGAGGCGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACG
ATAAAGCAAAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAA
ATCGATTCCAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGA
GGAAACCCA
BO18288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-PA | 921 | CG31251-RA | 1..743 | 17..759 | 3715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-RA | 1060 | CG31251-RA | 71..813 | 17..759 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17684155..17684687 | 650..118 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 17683987..17684096 | 759..650 | 550 | 100 | Minus |
3R | 32079331 | 3R | 17684745..17684845 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:37 has no hits.
BO18288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:01 Download gff for
BO18288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-PA | 1..742 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:40 Download gff for
BO18288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 71..812 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:27 Download gff for
BO18288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 71..812 | 17..758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:27 Download gff for
BO18288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17683988..17684095 | 651..758 | 100 | <- | Minus |
3R | 17684155..17684687 | 118..650 | 100 | <- | Minus |
3R | 17684745..17684845 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:40 Download gff for
BO18288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13509710..13509817 | 651..758 | 100 | <- | Minus |
arm_3R | 13509877..13510409 | 118..650 | 100 | <- | Minus |
arm_3R | 13510467..13510567 | 17..117 | 100 | | Minus |
BO18288.complete Sequence
952 bp assembled on 2006-10-11
GenBank Submission: FJ634373
> BO18288.complete
GAAGTTATCAGTCGACATGGACTTTCAGCGAAACGATGCTATGCTCATGG
AAATTCTGCAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTC
GGATTTCTGCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGC
GGATAAAATAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCG
CCATGCAGCGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAA
GGCGGTGCAGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGT
CCTGGAAAGCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGA
GCCAGCCGCCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGAC
TACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAA
GGATGTGGAGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGA
AGCTGCACATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCAT
AGCCCAGAGACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACA
CAAGGAGGCGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACG
ATAAAGCAAAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAA
ATCGATTCCAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGA
GGAAACCCAGGCCACCATAGAAAAGCTTAGGGTCCAGCAGTTGGCAGCAG
ACAAGCAACAAAATGAAATTCAGACCTCAAGTCCCGACCAAGCTATAAAC
CTGGATCGCCTGAAAGCTGCCTGGGATGCCGAAGGTTCGCCGTTTAAAGG
ACAGCCCTTTGATCCTTCTATCGTAAGAATGAGTGCAAGCTTTCTAGACC
AT
BO18288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-RA | 921 | CG31251-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-RA | 1060 | CG31251-RA | 71..988 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17684155..17684687 | 650..118 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 17683812..17684096 | 934..650 | 1425 | 100 | Minus |
3R | 32079331 | 3R | 17684745..17684845 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:20:02 has no hits.
BO18288.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:08 Download gff for
BO18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 1..921 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:11 Download gff for
BO18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 67..987 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:11 Download gff for
BO18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 71..988 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:08 Download gff for
BO18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 67..987 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:38 Download gff for
BO18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31251-RA | 71..988 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:38 Download gff for
BO18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17683810..17684095 | 651..936 | 99 | <- | Minus |
3R | 17684155..17684687 | 118..650 | 100 | <- | Minus |
3R | 17684745..17684845 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:11 Download gff for
BO18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13509532..13509817 | 651..936 | 99 | <- | Minus |
arm_3R | 13509877..13510409 | 118..650 | 100 | <- | Minus |
arm_3R | 13510467..13510567 | 17..117 | 100 | | Minus |
BO18288.pep Sequence
Translation from 16 to 952
> BO18288.pep
MDFQRNDAMLMEILQDRKTITGFLDSIFGFLRRNTDFYHTKRDEADKIGF
PKGVRDQILYGAMQRYDPDCLLQSLTAEGGADDGETAPPAVEEVVLESED
GPQDEEMKPIESQPPQKGKEQSKFSPSDYKNGDVFETHCWSQTLKDVEVQ
ALLPKDHQTAKKLHISIQAQHIKVSSKHSPETIILEGNLSQRIKHKEAVW
TIDQNRLIISYDKAKELWWDRLFEGDPEIDSKKIECERYIDDLPEETQAT
IEKLRVQQLAADKQQNEIQTSSPDQAINLDRLKAAWDAEGSPFKGQPFDP
SIVRMSASFLDH
BO18288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31251-PA | 306 | CG31251-PA | 1..306 | 1..306 | 1607 | 100 | Plus |
nudC-PB | 332 | CG9710-PB | 26..295 | 23..258 | 194 | 27.4 | Plus |
nudC-PA | 332 | CG9710-PA | 26..295 | 23..258 | 194 | 27.4 | Plus |