Clone BO18288 Report

Search the DGRC for BO18288

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG31251-RA
Protein status:BO18288.pep: validated full length
Sequenced Size:952

Clone Sequence Records

BO18288.3prime Sequence

709 bp (666 high quality bases) assembled on 2006-10-13

> BO18288.3prime
ATGGTCTAGAAAGCTTGCACTCATTCTTACGATAGAAGGATCAAAGGGCT
GTCCTTTAAACGGCGAACCTTCGGCATCCCAGGCAGCTTTCAGGCGATCC
AGGTTTATAGCTTGGTCGGGACTTGAGGTCTGAATTTCATTTTGTTGCTT
GTCTGCTGCCAACTGCTGGACCCTAAGCTTTTCTATGGTGGCCTGGGTTT
CCTCCGGCAAATCATCTATATAGCGTTCGCATTCAATCTTCTTGGAATCG
ATTTCTGGATCACCTTCGAAGAGCCGATCCCACCAGAGCTCCTTTGCTTT
ATCGTAACTTATGATCAATCGGTTCTGATCAATTGTCCACACCGCCTCCT
TGTGTTTAATCCGCTGGCTCAGGTTTCCCTCGAGGATGATCGTCTCTGGG
CTATGCTTGCTGCTCACTTTGATGTGCTGGGCCTGAATTGAAATGTGCAG
CTTCTTCGCCGTTTGATGATCCTTGGGAAGCAGAGCCTGCACCTCCACAT
CCTTGAGGGTTTGTGACCAGCAGTGCGTTTCGAACACATCTCCGTTTTTG
TAGTCGCTGGGGGAGAACTTTGACTGCTCCTTCCCTTTTTGTGGCGGCTG
GCTCTCTATGGGTTTCATTTCCTCGTCCTGAGGACCATCTTCGCTTTCCA
GGACCACTTCTTCGACGGCAGGCGGAGCCGTTTCTCCATCATCTGCACCG
CCTTCCGCG

BO18288.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-PA 921 CG31251-RA 228..918 709..19 3455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-RA 1060 CG31251-RA 298..988 709..19 3455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17684155..17684561 303..709 2035 100 Plus
3R 32079331 3R 17683812..17684096 19..303 1425 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:00:39 has no hits.

BO18288.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:00 Download gff for BO18288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-PA 228..921 15..709 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:55 Download gff for BO18288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 298..995 10..709 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:58 Download gff for BO18288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 298..995 10..709 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:58 Download gff for BO18288.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17683804..17684095 10..302 98 <- Plus
3R 17684155..17684561 303..709 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:55 Download gff for BO18288.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13509526..13509817 10..302 98 <- Plus
arm_3R 13509877..13510283 303..709 100   Plus

BO18288.5prime Sequence

759 bp (707 high quality bases) assembled on 2006-10-13

> BO18288.5prime
GAAGTTATCAGTCGACATGGACTTTCAGCGAAACGATGCTATGCTCATGG
AAATTCTGCAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTC
GGATTTCTGCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGC
GGATAAAATAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCG
CCATGCAGCGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAA
GGCGGTGCAGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGT
CCTGGAAAGCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGA
GCCAGCCGCCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGAC
TACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAA
GGATGTGGAGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGA
AGCTGCACATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCAT
AGCCCAGAGACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACA
CAAGGAGGCGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACG
ATAAAGCAAAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAA
ATCGATTCCAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGA
GGAAACCCA

BO18288.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-PA 921 CG31251-RA 1..743 17..759 3715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-RA 1060 CG31251-RA 71..813 17..759 3715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17684155..17684687 650..118 2665 100 Minus
3R 32079331 3R 17683987..17684096 759..650 550 100 Minus
3R 32079331 3R 17684745..17684845 117..17 505 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:58:37 has no hits.

BO18288.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:01 Download gff for BO18288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-PA 1..742 17..758 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:40 Download gff for BO18288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 71..812 17..758 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:27 Download gff for BO18288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 71..812 17..758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:27 Download gff for BO18288.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17683988..17684095 651..758 100 <- Minus
3R 17684155..17684687 118..650 100 <- Minus
3R 17684745..17684845 17..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:40 Download gff for BO18288.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13509710..13509817 651..758 100 <- Minus
arm_3R 13509877..13510409 118..650 100 <- Minus
arm_3R 13510467..13510567 17..117 100   Minus

BO18288.complete Sequence

952 bp assembled on 2006-10-11

GenBank Submission: FJ634373

> BO18288.complete
GAAGTTATCAGTCGACATGGACTTTCAGCGAAACGATGCTATGCTCATGG
AAATTCTGCAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTC
GGATTTCTGCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGC
GGATAAAATAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCG
CCATGCAGCGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAA
GGCGGTGCAGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGT
CCTGGAAAGCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGA
GCCAGCCGCCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGAC
TACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAA
GGATGTGGAGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGA
AGCTGCACATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCAT
AGCCCAGAGACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACA
CAAGGAGGCGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACG
ATAAAGCAAAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAA
ATCGATTCCAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGA
GGAAACCCAGGCCACCATAGAAAAGCTTAGGGTCCAGCAGTTGGCAGCAG
ACAAGCAACAAAATGAAATTCAGACCTCAAGTCCCGACCAAGCTATAAAC
CTGGATCGCCTGAAAGCTGCCTGGGATGCCGAAGGTTCGCCGTTTAAAGG
ACAGCCCTTTGATCCTTCTATCGTAAGAATGAGTGCAAGCTTTCTAGACC
AT

BO18288.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-RA 921 CG31251-PA 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-RA 1060 CG31251-RA 71..988 17..934 4590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17684155..17684687 650..118 2665 100 Minus
3R 32079331 3R 17683812..17684096 934..650 1425 100 Minus
3R 32079331 3R 17684745..17684845 117..17 505 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:20:02 has no hits.

BO18288.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:08 Download gff for BO18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 1..921 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:11 Download gff for BO18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 67..987 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:11 Download gff for BO18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 71..988 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:08 Download gff for BO18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 67..987 17..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:38 Download gff for BO18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG31251-RA 71..988 17..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:38 Download gff for BO18288.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17683810..17684095 651..936 99 <- Minus
3R 17684155..17684687 118..650 100 <- Minus
3R 17684745..17684845 17..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:11 Download gff for BO18288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13509532..13509817 651..936 99 <- Minus
arm_3R 13509877..13510409 118..650 100 <- Minus
arm_3R 13510467..13510567 17..117 100   Minus

BO18288.pep Sequence

Translation from 16 to 952

> BO18288.pep
MDFQRNDAMLMEILQDRKTITGFLDSIFGFLRRNTDFYHTKRDEADKIGF
PKGVRDQILYGAMQRYDPDCLLQSLTAEGGADDGETAPPAVEEVVLESED
GPQDEEMKPIESQPPQKGKEQSKFSPSDYKNGDVFETHCWSQTLKDVEVQ
ALLPKDHQTAKKLHISIQAQHIKVSSKHSPETIILEGNLSQRIKHKEAVW
TIDQNRLIISYDKAKELWWDRLFEGDPEIDSKKIECERYIDDLPEETQAT
IEKLRVQQLAADKQQNEIQTSSPDQAINLDRLKAAWDAEGSPFKGQPFDP
SIVRMSASFLDH

BO18288.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31251-PA 306 CG31251-PA 1..306 1..306 1607 100 Plus
nudC-PB 332 CG9710-PB 26..295 23..258 194 27.4 Plus
nudC-PA 332 CG9710-PA 26..295 23..258 194 27.4 Plus