Clone Sequence Records
BO18289.3prime Sequence
566 bp (566 high quality bases) assembled on 2006-10-13
> BO18289.3prime
ATGGTCTAGAAAGCTTGCATCCTCGCCAGCTGGTATGACCTCCTCTAGAC
GCCGCACGAACTTAACGCGCAGTTCCGTCACATTGTCGCCCTTCAGTTGA
TCCTGCACGAACCAGCACTGCACCTCCAGCTGCACCATCTCCAGGGCGCC
GCGGATGCAGCCGCTGAGTATGGCACTGTAGCGCAGATTGGTCAGGTCAG
GCGGCAGCTCGACGAACTCCGTCAGCGGATTGCTATCGAATACCAGGGAG
AACTCATCGGAGGCCGGCGACCAGTTCGAGATGGTGGGCTGGATATTCAG
GTAGATGCGGAACGCCTGCTGGATGCGATCGGCCGTCTCGCGCATCTCGA
GGCAGCGTGGCGCCGATGTCCTGGCCAGAAAGTCCTCGATCAGTCGCATG
CCCATGTTGTAGCCGATTCGCTCCAGCTGCTTGTTCACGTCCTCGGCGTT
CTCGAAGTCGCGCAGCATCTGGGTGACGAGTGCTCCGTAGGTGAGTGTCA
GGAACTCCGAGTTCACTTTCTTGGCGTCCAAACGAGAGGCTTGTCGTGAC
ATGTCGACTGATAACT
BO18289.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3911-PA | 537 | CG3911-RA | 1..534 | 552..19 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet3-RA | 1125 | CG3911-RA | 106..639 | 552..19 | 2670 | 100 | Minus |
MTF-1-RF | 3182 | CG3743-RF | 2841..3182 | 102..443 | 1710 | 100 | Plus |
MTF-1-RF | 3182 | CG3743-RF | 2671..2748 | 30..107 | 390 | 100 | Plus |
Nf-YA-RA | 2055 | CG3891-RA | 106..144 | 552..514 | 195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9439149..9439561 | 102..514 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 9438968..9439056 | 19..107 | 445 | 100 | Plus |
3L | 28110227 | 3L | 9442124..9442162 | 514..552 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:39:55 has no hits.
BO18289.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:01 Download gff for
BO18289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3911-PA | 1..537 | 18..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:13 Download gff for
BO18289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet3-RA | 96..639 | 19..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:28 Download gff for
BO18289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet3-RA | 96..639 | 19..560 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:28 Download gff for
BO18289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9438968..9439051 | 19..102 | 100 | <- | Plus |
3L | 9439150..9439560 | 103..513 | 100 | <- | Plus |
3L | 9442124..9442172 | 514..560 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:13 Download gff for
BO18289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9432068..9432151 | 19..102 | 100 | <- | Plus |
arm_3L | 9432250..9432660 | 103..513 | 100 | <- | Plus |
arm_3L | 9435224..9435272 | 514..560 | 91 | | Plus |
BO18289.5prime Sequence
566 bp (566 high quality bases) assembled on 2006-10-13
> BO18289.5prime
GAAGTTATCAGTCGACATGTCACGACAAGCCTCTCGTTTGGACGCCAAGA
AAGTGAACTCGGAGTTCCTGACACTCACCTACGGAGCACTCGTCACCCAG
ATGCTGCGCGACTTCGAGAACGCCGAGGACGTGAACAAGCAGCTGGAGCG
AATCGGCTACAACATGGGCATGCGACTGATCGAGGACTTTCTGGCCAGGA
CATCGGCGCCACGCTGCCTCGAGATGCGCGAGACGGCCGATCGCATCCAG
CAGGCGTTCCGCATCTACCTGAATATCCAGCCCACCATCTCGAACTGGTC
GCCGGCCTCCGATGAGTTCTCCCTGGTATTCGATAGCAATCCGCTGACGG
AGTTCGTCGAGCTGCCGCCTGACCTGACCAATCTGCGCTACAGTGCCATA
CTCAGCGGCTGCATCCGCGGCGCCCTGGAGATGGTGCAGCTGGAGGTGCA
GTGCTGGTTCGTGCAGGATCAACTGAAGGGCGACAATGTGACGGAACTGC
GCGTTAAGTTCGTGCGGCGTCTAGAGGAGGTCATACCAGCTGGCGAGGAT
GCAAGCTTTCTAGACC
BO18289.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3911-PA | 537 | CG3911-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet3-RA | 1125 | CG3911-RA | 106..639 | 17..550 | 2670 | 100 | Plus |
MTF-1-RF | 3182 | CG3743-RF | 2841..3182 | 467..126 | 1710 | 100 | Minus |
MTF-1-RF | 3182 | CG3743-RF | 2671..2748 | 539..462 | 390 | 100 | Minus |
Nf-YA-RA | 2055 | CG3891-RA | 106..144 | 17..55 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9439149..9439561 | 467..55 | 2065 | 100 | Minus |
3L | 28110227 | 3L | 9438968..9439056 | 550..462 | 445 | 100 | Minus |
3L | 28110227 | 3L | 9442124..9442162 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:54:22 has no hits.
BO18289.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:02 Download gff for
BO18289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3911-PA | 1..537 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:49 Download gff for
BO18289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet3-RA | 96..639 | 9..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:48 Download gff for
BO18289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet3-RA | 96..639 | 9..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:48 Download gff for
BO18289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9438968..9439051 | 467..550 | 100 | <- | Minus |
3L | 9439150..9439560 | 56..466 | 100 | <- | Minus |
3L | 9442124..9442172 | 9..55 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:49 Download gff for
BO18289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9432068..9432151 | 467..550 | 100 | <- | Minus |
arm_3L | 9432250..9432660 | 56..466 | 100 | <- | Minus |
arm_3L | 9435224..9435272 | 9..55 | 91 | | Minus |
BO18289.complete Sequence
568 bp assembled on 2006-10-11
GenBank Submission: FJ634374
> BO18289.complete
GAAGTTATCAGTCGACATGTCACGACAAGCCTCTCGTTTGGACGCCAAGA
AAGTGAACTCGGAGTTCCTGACACTCACCTACGGAGCACTCGTCACCCAG
ATGCTGCGCGACTTCGAGAACGCCGAGGACGTGAACAAGCAGCTGGAGCG
AATCGGCTACAACATGGGCATGCGACTGATCGAGGACTTTCTGGCCAGGA
CATCGGCGCCACGCTGCCTCGAGATGCGCGAGACGGCCGATCGCATCCAG
CAGGCGTTCCGCATCTACCTGAATATCCAGCCCACCATCTCGAACTGGTC
GCCGGCCTCCGATGAGTTCTCCCTGGTATTCGATAGCAATCCGCTGACGG
AGTTCGTCGAGCTGCCGCCTGACCTGACCAATCTGCGCTACAGTGCCATA
CTCAGCGGCTGCATCCGCGGCGCCCTGGAGATGGTGCAGCTGGAGGTGCA
GTGCTGGTTCGTGCAGGATCAACTGAAGGGCGACAATGTGACGGAACTGC
GCGTTAAGTTCGTGCGGCGTCTAGAGGAGGTCATACCAGCTGGCGAGGAT
GCAAGCTTTCTAGACCAT
BO18289.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet3-RA | 537 | CG3911-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet3-RA | 1125 | CG3911-RA | 106..639 | 17..550 | 2670 | 100 | Plus |
MTF-1-RF | 3182 | CG3743-RF | 2841..3182 | 467..126 | 1710 | 100 | Minus |
MTF-1-RF | 3182 | CG3743-RF | 2671..2748 | 539..462 | 390 | 100 | Minus |
Nf-YA-RA | 2055 | CG3891-RA | 106..144 | 17..55 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9439149..9439561 | 467..55 | 2065 | 100 | Minus |
3L | 28110227 | 3L | 9438968..9439056 | 550..462 | 445 | 100 | Minus |
3L | 28110227 | 3L | 9442124..9442162 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:05:08 has no hits.
BO18289.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:09 Download gff for
BO18289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3911-RA | 1..537 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:12 Download gff for
BO18289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3911-RA | 82..625 | 9..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:32 Download gff for
BO18289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet3-RA | 106..639 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:09 Download gff for
BO18289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3911-RA | 82..625 | 9..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:27 Download gff for
BO18289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet3-RA | 106..639 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:27 Download gff for
BO18289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9438966..9439051 | 467..552 | 97 | <- | Minus |
3L | 9439150..9439560 | 56..466 | 100 | <- | Minus |
3L | 9442124..9442162 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:32 Download gff for
BO18289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9432066..9432151 | 467..552 | 97 | <- | Minus |
arm_3L | 9432250..9432660 | 56..466 | 100 | <- | Minus |
arm_3L | 9435224..9435262 | 17..55 | 100 | | Minus |
BO18289.pep Sequence
Translation from 16 to 568
> BO18289.pep
MSRQASRLDAKKVNSEFLTLTYGALVTQMLRDFENAEDVNKQLERIGYNM
GMRLIEDFLARTSAPRCLEMRETADRIQQAFRIYLNIQPTISNWSPASDE
FSLVFDSNPLTEFVELPPDLTNLRYSAILSGCIRGALEMVQLEVQCWFVQ
DQLKGDNVTELRVKFVRRLEEVIPAGEDASFLDH
BO18289.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet3-PA | 178 | CG3911-PA | 1..178 | 1..178 | 907 | 100 | Plus |