Clone BO18289 Report

Search the DGRC for BO18289

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptBet3-RA
Protein status:BO18289.pep: validated full length
Sequenced Size:568

Clone Sequence Records

BO18289.3prime Sequence

566 bp (566 high quality bases) assembled on 2006-10-13

> BO18289.3prime
ATGGTCTAGAAAGCTTGCATCCTCGCCAGCTGGTATGACCTCCTCTAGAC
GCCGCACGAACTTAACGCGCAGTTCCGTCACATTGTCGCCCTTCAGTTGA
TCCTGCACGAACCAGCACTGCACCTCCAGCTGCACCATCTCCAGGGCGCC
GCGGATGCAGCCGCTGAGTATGGCACTGTAGCGCAGATTGGTCAGGTCAG
GCGGCAGCTCGACGAACTCCGTCAGCGGATTGCTATCGAATACCAGGGAG
AACTCATCGGAGGCCGGCGACCAGTTCGAGATGGTGGGCTGGATATTCAG
GTAGATGCGGAACGCCTGCTGGATGCGATCGGCCGTCTCGCGCATCTCGA
GGCAGCGTGGCGCCGATGTCCTGGCCAGAAAGTCCTCGATCAGTCGCATG
CCCATGTTGTAGCCGATTCGCTCCAGCTGCTTGTTCACGTCCTCGGCGTT
CTCGAAGTCGCGCAGCATCTGGGTGACGAGTGCTCCGTAGGTGAGTGTCA
GGAACTCCGAGTTCACTTTCTTGGCGTCCAAACGAGAGGCTTGTCGTGAC
ATGTCGACTGATAACT

BO18289.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3911-PA 537 CG3911-RA 1..534 552..19 2670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Bet3-RA 1125 CG3911-RA 106..639 552..19 2670 100 Minus
MTF-1-RF 3182 CG3743-RF 2841..3182 102..443 1710 100 Plus
MTF-1-RF 3182 CG3743-RF 2671..2748 30..107 390 100 Plus
Nf-YA-RA 2055 CG3891-RA 106..144 552..514 195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9439149..9439561 102..514 2065 100 Plus
3L 28110227 3L 9438968..9439056 19..107 445 100 Plus
3L 28110227 3L 9442124..9442162 514..552 195 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:39:55 has no hits.

BO18289.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:01 Download gff for BO18289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3911-PA 1..537 18..552 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:13 Download gff for BO18289.3prime
Subject Subject Range Query Range Percent Splice Strand
Bet3-RA 96..639 19..560 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:28 Download gff for BO18289.3prime
Subject Subject Range Query Range Percent Splice Strand
Bet3-RA 96..639 19..560 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:28 Download gff for BO18289.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9438968..9439051 19..102 100 <- Plus
3L 9439150..9439560 103..513 100 <- Plus
3L 9442124..9442172 514..560 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:13 Download gff for BO18289.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9432068..9432151 19..102 100 <- Plus
arm_3L 9432250..9432660 103..513 100 <- Plus
arm_3L 9435224..9435272 514..560 91   Plus

BO18289.5prime Sequence

566 bp (566 high quality bases) assembled on 2006-10-13

> BO18289.5prime
GAAGTTATCAGTCGACATGTCACGACAAGCCTCTCGTTTGGACGCCAAGA
AAGTGAACTCGGAGTTCCTGACACTCACCTACGGAGCACTCGTCACCCAG
ATGCTGCGCGACTTCGAGAACGCCGAGGACGTGAACAAGCAGCTGGAGCG
AATCGGCTACAACATGGGCATGCGACTGATCGAGGACTTTCTGGCCAGGA
CATCGGCGCCACGCTGCCTCGAGATGCGCGAGACGGCCGATCGCATCCAG
CAGGCGTTCCGCATCTACCTGAATATCCAGCCCACCATCTCGAACTGGTC
GCCGGCCTCCGATGAGTTCTCCCTGGTATTCGATAGCAATCCGCTGACGG
AGTTCGTCGAGCTGCCGCCTGACCTGACCAATCTGCGCTACAGTGCCATA
CTCAGCGGCTGCATCCGCGGCGCCCTGGAGATGGTGCAGCTGGAGGTGCA
GTGCTGGTTCGTGCAGGATCAACTGAAGGGCGACAATGTGACGGAACTGC
GCGTTAAGTTCGTGCGGCGTCTAGAGGAGGTCATACCAGCTGGCGAGGAT
GCAAGCTTTCTAGACC

BO18289.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3911-PA 537 CG3911-RA 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Bet3-RA 1125 CG3911-RA 106..639 17..550 2670 100 Plus
MTF-1-RF 3182 CG3743-RF 2841..3182 467..126 1710 100 Minus
MTF-1-RF 3182 CG3743-RF 2671..2748 539..462 390 100 Minus
Nf-YA-RA 2055 CG3891-RA 106..144 17..55 195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9439149..9439561 467..55 2065 100 Minus
3L 28110227 3L 9438968..9439056 550..462 445 100 Minus
3L 28110227 3L 9442124..9442162 55..17 195 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:54:22 has no hits.

BO18289.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:02 Download gff for BO18289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3911-PA 1..537 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:49 Download gff for BO18289.5prime
Subject Subject Range Query Range Percent Splice Strand
Bet3-RA 96..639 9..550 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:48 Download gff for BO18289.5prime
Subject Subject Range Query Range Percent Splice Strand
Bet3-RA 96..639 9..550 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:48 Download gff for BO18289.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9438968..9439051 467..550 100 <- Minus
3L 9439150..9439560 56..466 100 <- Minus
3L 9442124..9442172 9..55 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:49 Download gff for BO18289.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9432068..9432151 467..550 100 <- Minus
arm_3L 9432250..9432660 56..466 100 <- Minus
arm_3L 9435224..9435272 9..55 91   Minus

BO18289.complete Sequence

568 bp assembled on 2006-10-11

GenBank Submission: FJ634374

> BO18289.complete
GAAGTTATCAGTCGACATGTCACGACAAGCCTCTCGTTTGGACGCCAAGA
AAGTGAACTCGGAGTTCCTGACACTCACCTACGGAGCACTCGTCACCCAG
ATGCTGCGCGACTTCGAGAACGCCGAGGACGTGAACAAGCAGCTGGAGCG
AATCGGCTACAACATGGGCATGCGACTGATCGAGGACTTTCTGGCCAGGA
CATCGGCGCCACGCTGCCTCGAGATGCGCGAGACGGCCGATCGCATCCAG
CAGGCGTTCCGCATCTACCTGAATATCCAGCCCACCATCTCGAACTGGTC
GCCGGCCTCCGATGAGTTCTCCCTGGTATTCGATAGCAATCCGCTGACGG
AGTTCGTCGAGCTGCCGCCTGACCTGACCAATCTGCGCTACAGTGCCATA
CTCAGCGGCTGCATCCGCGGCGCCCTGGAGATGGTGCAGCTGGAGGTGCA
GTGCTGGTTCGTGCAGGATCAACTGAAGGGCGACAATGTGACGGAACTGC
GCGTTAAGTTCGTGCGGCGTCTAGAGGAGGTCATACCAGCTGGCGAGGAT
GCAAGCTTTCTAGACCAT

BO18289.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
Bet3-RA 537 CG3911-PA 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
Bet3-RA 1125 CG3911-RA 106..639 17..550 2670 100 Plus
MTF-1-RF 3182 CG3743-RF 2841..3182 467..126 1710 100 Minus
MTF-1-RF 3182 CG3743-RF 2671..2748 539..462 390 100 Minus
Nf-YA-RA 2055 CG3891-RA 106..144 17..55 195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9439149..9439561 467..55 2065 100 Minus
3L 28110227 3L 9438968..9439056 550..462 445 100 Minus
3L 28110227 3L 9442124..9442162 55..17 195 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:05:08 has no hits.

BO18289.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:09 Download gff for BO18289.complete
Subject Subject Range Query Range Percent Splice Strand
CG3911-RA 1..537 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:12 Download gff for BO18289.complete
Subject Subject Range Query Range Percent Splice Strand
CG3911-RA 82..625 9..550 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:32 Download gff for BO18289.complete
Subject Subject Range Query Range Percent Splice Strand
Bet3-RA 106..639 17..552 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:09 Download gff for BO18289.complete
Subject Subject Range Query Range Percent Splice Strand
CG3911-RA 82..625 9..550 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:27 Download gff for BO18289.complete
Subject Subject Range Query Range Percent Splice Strand
Bet3-RA 106..639 17..552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:27 Download gff for BO18289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9438966..9439051 467..552 97 <- Minus
3L 9439150..9439560 56..466 100 <- Minus
3L 9442124..9442162 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:32 Download gff for BO18289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9432066..9432151 467..552 97 <- Minus
arm_3L 9432250..9432660 56..466 100 <- Minus
arm_3L 9435224..9435262 17..55 100   Minus

BO18289.pep Sequence

Translation from 16 to 568

> BO18289.pep
MSRQASRLDAKKVNSEFLTLTYGALVTQMLRDFENAEDVNKQLERIGYNM
GMRLIEDFLARTSAPRCLEMRETADRIQQAFRIYLNIQPTISNWSPASDE
FSLVFDSNPLTEFVELPPDLTNLRYSAILSGCIRGALEMVQLEVQCWFVQ
DQLKGDNVTELRVKFVRRLEEVIPAGEDASFLDH

BO18289.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Bet3-PA 178 CG3911-PA 1..178 1..178 907 100 Plus