Clone Sequence Records
BO18291.3prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO18291.3prime
ATGGTCTAGAAAGCTTGCGATACCGGCCCGCTCCAGAGCACTGAGCTGGG
TGCCCAGGCGCTCCTCTTTGGCCTTGCGCTCGGTACTGATCTTCTTCGAC
CACTGGTACGTGTTGAGGAAAGTCTGCACGTCGGTCTTTCCGTTCAGGAA
GTGCTCCACGTGACGATCGCAGTCGCCATCGGCATTGGAAGCTGCAATCT
GAAGAAGCTCCCTGATATGCTGAGGCGCGTATTCATCCGACTTCTTGAAG
TACTTCTTGTTCAGCCGGTCGCATTTCTCGCCTAGGTTTTTTAAAGCTGT
AAAATCGTCGCTGAGTCGGCGCTTCAGCTCTACCAGATGAATGCCCTTGC
ACTCGTTCTCTCTTGATATAATCTCCACCTGGTCCATCATTGAATCGAGC
TCCTCGTTCAGGTACTGCACCACGGACATCTCCTCGATGAAGTCCTCGAA
GAACTCGGGATCCCTGTCCAGCTGTTTCAGTTCGTCCAGCGACAAAGTGC
ACAGGTTGGGCAGGTTGTCCGATTCGCCGGCCTCCTGCTCCTTGGCCTCA
CTGCTATCGGTCGGAGGTCTTTGAGCAAGAGAGTGGGCAAGGGCAAGATC
CTGTGGTGTAGTCGGCATGTCGACTGATAACT
BO18291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17828-PA | 603 | mod(r)-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
CG17828-PC | 603 | mod(r)-RC | 1..600 | 618..19 | 3000 | 100 | Minus |
CG17828-PB | 591 | mod(r)-RB | 1..408 | 618..211 | 2040 | 100 | Minus |
CG17828-PD | 591 | mod(r)-RD | 1..408 | 618..211 | 2040 | 100 | Minus |
CG17828-PB | 591 | mod(r)-RB | 408..588 | 199..19 | 905 | 100 | Minus |
CG17828-PD | 591 | mod(r)-RD | 408..588 | 199..19 | 905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mod(r)-RF | 1294 | CG17828-RF | 269..868 | 618..19 | 3000 | 100 | Minus |
mod(r)-RC | 1332 | CG17828-RC | 307..906 | 618..19 | 3000 | 100 | Minus |
mod(r)-RA | 1343 | CG17828-RA | 318..917 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 621891..622151 | 618..358 | 1290 | 99.6 | Minus |
X | 23542271 | X | 622433..622625 | 211..19 | 965 | 100 | Minus |
X | 23542271 | X | 622207..622359 | 362..210 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:36:59 has no hits.
BO18291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:03 Download gff for
BO18291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17828-PC | 1..603 | 18..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:52 Download gff for
BO18291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(r)-RA | 313..924 | 11..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:40 Download gff for
BO18291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(r)-RA | 313..924 | 11..623 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:40 Download gff for
BO18291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 621886..622146 | 363..623 | 99 | -> | Minus |
X | 622207..622358 | 211..362 | 100 | -> | Minus |
X | 622434..622632 | 11..210 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:52 Download gff for
BO18291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 515919..516179 | 363..623 | 99 | -> | Minus |
arm_X | 516240..516391 | 211..362 | 100 | -> | Minus |
arm_X | 516467..516665 | 11..210 | 98 | | Minus |
BO18291.5prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO18291.5prime
GAAGTTATCAGTCGACATGCCGACTACACCACAGGATCTTGCCCTTGCCC
ACTCTCTTGCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAG
GAGGCCGGCGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGA
CGAACTGAAACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCG
AGGAGATGTCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATG
GACCAGGTGGAGATTATATCAAGAGAGAACGAGTGCAAGGGCATTCATCT
GGTAGAGCTGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACC
TAGGCGAGAAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGAT
GAATACGCGCCTCAGCATATCAGGGAGCTTCTTCAGATTGCAGCTTCCAA
TGCCGATGGCGACTGCGATCGTCACGTGGAGCACTTCCTGAACGGAAAGA
CCGACGTGCAGACTTTCCTCAACACGTACCAGTGGTCGAAGAAGATCAGT
ACCGAGCGCAAGGCCAAAGAGGAGCGCCTGGGCACCCAGCTCAGTGCTCT
GGAGCGGGCCGGTATCGCAAGCTTTCTAGACC
BO18291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17828-PA | 603 | mod(r)-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
CG17828-PC | 603 | mod(r)-RC | 1..600 | 17..616 | 3000 | 100 | Plus |
CG17828-PB | 591 | mod(r)-RB | 1..408 | 17..424 | 2040 | 100 | Plus |
CG17828-PD | 591 | mod(r)-RD | 1..408 | 17..424 | 2040 | 100 | Plus |
CG17828-PB | 591 | mod(r)-RB | 408..588 | 436..616 | 905 | 100 | Plus |
CG17828-PD | 591 | mod(r)-RD | 408..588 | 436..616 | 905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mod(r)-RF | 1294 | CG17828-RF | 269..868 | 17..616 | 3000 | 100 | Plus |
mod(r)-RC | 1332 | CG17828-RC | 307..906 | 17..616 | 3000 | 100 | Plus |
mod(r)-RA | 1343 | CG17828-RA | 318..917 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 621891..622151 | 17..277 | 1290 | 99.6 | Plus |
X | 23542271 | X | 622433..622625 | 424..616 | 965 | 100 | Plus |
X | 23542271 | X | 622207..622359 | 273..425 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:45:30 has no hits.
BO18291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:03 Download gff for
BO18291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17828-PC | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:50 Download gff for
BO18291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(r)-RA | 313..924 | 12..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:12 Download gff for
BO18291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(r)-RA | 313..924 | 12..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:12 Download gff for
BO18291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 621886..622146 | 12..272 | 99 | -> | Plus |
X | 622207..622358 | 273..424 | 100 | -> | Plus |
X | 622434..622632 | 425..624 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:50 Download gff for
BO18291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 515919..516179 | 12..272 | 99 | -> | Plus |
arm_X | 516240..516391 | 273..424 | 100 | -> | Plus |
arm_X | 516467..516665 | 425..624 | 98 | | Plus |
BO18291.complete Sequence
634 bp assembled on 2006-10-11
GenBank Submission: FJ634375
> BO18291.complete
GAAGTTATCAGTCGACATGCCGACTACACCACAGGATCTTGCCCTTGCCC
ACTCTCTTGCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAG
GAGGCCGGCGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGA
CGAACTGAAACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCG
AGGAGATGTCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATG
GACCAGGTGGAGATTATATCAAGAGAGAACGAGTGCAAGGGCATTCATCT
GGTAGAGCTGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACC
TAGGCGAGAAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGAT
GAATACGCGCCTCAGCATATCAGGGAGCTTCTTCAGATTGCAGCTTCCAA
TGCCGATGGCGACTGCGATCGTCACGTGGAGCACTTCCTGAACGGAAAGA
CCGACGTGCAGACTTTCCTCAACACGTACCAGTGGTCGAAGAAGATCAGT
ACCGAGCGCAAGGCCAAAGAGGAGCGCCTGGGCACCCAGCTCAGTGCTCT
GGAGCGGGCCGGTATCGCAAGCTTTCTAGACCAT
BO18291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mod(r)-RF | 603 | CG17828-PF | 1..600 | 17..616 | 3000 | 100 | Plus |
mod(r)-RC | 603 | CG17828-PC | 1..600 | 17..616 | 3000 | 100 | Plus |
mod(r)-RA | 603 | CG17828-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mod(r)-RF | 1294 | CG17828-RF | 269..868 | 17..616 | 3000 | 100 | Plus |
mod(r)-RC | 1332 | CG17828-RC | 307..906 | 17..616 | 3000 | 100 | Plus |
mod(r)-RA | 1343 | CG17828-RA | 318..917 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 621891..622151 | 17..277 | 1290 | 99.6 | Plus |
X | 23542271 | X | 622433..622625 | 424..616 | 965 | 100 | Plus |
X | 23542271 | X | 622207..622359 | 273..425 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:52:22 has no hits.
BO18291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:10 Download gff for
BO18291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(r)-RC | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:14 Download gff for
BO18291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(r)-RC | 296..907 | 12..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:20 Download gff for
BO18291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(r)-RA | 318..917 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:10 Download gff for
BO18291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(r)-RC | 296..907 | 12..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:09 Download gff for
BO18291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mod(r)-RA | 318..917 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:09 Download gff for
BO18291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 621891..622146 | 17..272 | 100 | -> | Plus |
X | 622207..622358 | 273..424 | 100 | -> | Plus |
X | 622434..622625 | 425..618 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:20 Download gff for
BO18291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 515924..516179 | 17..272 | 100 | -> | Plus |
arm_X | 516240..516391 | 273..424 | 100 | -> | Plus |
arm_X | 516467..516658 | 425..618 | 98 | | Plus |
BO18291.pep Sequence
Translation from 16 to 634
> BO18291.pep
MPTTPQDLALAHSLAQRPPTDSSEAKEQEAGESDNLPNLCTLSLDELKQL
DRDPEFFEDFIEEMSVVQYLNEELDSMMDQVEIISRENECKGIHLVELKR
RLSDDFTALKNLGEKCDRLNKKYFKKSDEYAPQHIRELLQIAASNADGDC
DRHVEHFLNGKTDVQTFLNTYQWSKKISTERKAKEERLGTQLSALERAGI
ASFLDH
BO18291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mod(r)-PF | 200 | CG17828-PF | 1..200 | 1..200 | 1034 | 100 | Plus |
mod(r)-PC | 200 | CG17828-PC | 1..200 | 1..200 | 1034 | 100 | Plus |
mod(r)-PA | 200 | CG17828-PA | 1..200 | 1..200 | 1034 | 100 | Plus |
mod(r)-PE | 196 | CG17828-PE | 1..196 | 1..200 | 1001 | 98 | Plus |
mod(r)-PD | 196 | CG17828-PD | 1..196 | 1..200 | 1001 | 98 | Plus |