Clone BO18291 Report

Search the DGRC for BO18291

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptmod(r)-RA
Protein status:BO18291.pep: validated full length
Sequenced Size:634

Clone Sequence Records

BO18291.3prime Sequence

632 bp (632 high quality bases) assembled on 2006-10-13

> BO18291.3prime
ATGGTCTAGAAAGCTTGCGATACCGGCCCGCTCCAGAGCACTGAGCTGGG
TGCCCAGGCGCTCCTCTTTGGCCTTGCGCTCGGTACTGATCTTCTTCGAC
CACTGGTACGTGTTGAGGAAAGTCTGCACGTCGGTCTTTCCGTTCAGGAA
GTGCTCCACGTGACGATCGCAGTCGCCATCGGCATTGGAAGCTGCAATCT
GAAGAAGCTCCCTGATATGCTGAGGCGCGTATTCATCCGACTTCTTGAAG
TACTTCTTGTTCAGCCGGTCGCATTTCTCGCCTAGGTTTTTTAAAGCTGT
AAAATCGTCGCTGAGTCGGCGCTTCAGCTCTACCAGATGAATGCCCTTGC
ACTCGTTCTCTCTTGATATAATCTCCACCTGGTCCATCATTGAATCGAGC
TCCTCGTTCAGGTACTGCACCACGGACATCTCCTCGATGAAGTCCTCGAA
GAACTCGGGATCCCTGTCCAGCTGTTTCAGTTCGTCCAGCGACAAAGTGC
ACAGGTTGGGCAGGTTGTCCGATTCGCCGGCCTCCTGCTCCTTGGCCTCA
CTGCTATCGGTCGGAGGTCTTTGAGCAAGAGAGTGGGCAAGGGCAAGATC
CTGTGGTGTAGTCGGCATGTCGACTGATAACT

BO18291.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17828-PA 603 mod(r)-RA 1..600 618..19 3000 100 Minus
CG17828-PC 603 mod(r)-RC 1..600 618..19 3000 100 Minus
CG17828-PB 591 mod(r)-RB 1..408 618..211 2040 100 Minus
CG17828-PD 591 mod(r)-RD 1..408 618..211 2040 100 Minus
CG17828-PB 591 mod(r)-RB 408..588 199..19 905 100 Minus
CG17828-PD 591 mod(r)-RD 408..588 199..19 905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RF 1294 CG17828-RF 269..868 618..19 3000 100 Minus
mod(r)-RC 1332 CG17828-RC 307..906 618..19 3000 100 Minus
mod(r)-RA 1343 CG17828-RA 318..917 618..19 3000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 621891..622151 618..358 1290 99.6 Minus
X 23542271 X 622433..622625 211..19 965 100 Minus
X 23542271 X 622207..622359 362..210 765 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:36:59 has no hits.

BO18291.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:03 Download gff for BO18291.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17828-PC 1..603 18..618 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:52 Download gff for BO18291.3prime
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 313..924 11..623 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:40 Download gff for BO18291.3prime
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 313..924 11..623 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:40 Download gff for BO18291.3prime
Subject Subject Range Query Range Percent Splice Strand
X 621886..622146 363..623 99 -> Minus
X 622207..622358 211..362 100 -> Minus
X 622434..622632 11..210 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:52 Download gff for BO18291.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 515919..516179 363..623 99 -> Minus
arm_X 516240..516391 211..362 100 -> Minus
arm_X 516467..516665 11..210 98   Minus

BO18291.5prime Sequence

632 bp (632 high quality bases) assembled on 2006-10-13

> BO18291.5prime
GAAGTTATCAGTCGACATGCCGACTACACCACAGGATCTTGCCCTTGCCC
ACTCTCTTGCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAG
GAGGCCGGCGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGA
CGAACTGAAACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCG
AGGAGATGTCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATG
GACCAGGTGGAGATTATATCAAGAGAGAACGAGTGCAAGGGCATTCATCT
GGTAGAGCTGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACC
TAGGCGAGAAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGAT
GAATACGCGCCTCAGCATATCAGGGAGCTTCTTCAGATTGCAGCTTCCAA
TGCCGATGGCGACTGCGATCGTCACGTGGAGCACTTCCTGAACGGAAAGA
CCGACGTGCAGACTTTCCTCAACACGTACCAGTGGTCGAAGAAGATCAGT
ACCGAGCGCAAGGCCAAAGAGGAGCGCCTGGGCACCCAGCTCAGTGCTCT
GGAGCGGGCCGGTATCGCAAGCTTTCTAGACC

BO18291.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17828-PA 603 mod(r)-RA 1..600 17..616 3000 100 Plus
CG17828-PC 603 mod(r)-RC 1..600 17..616 3000 100 Plus
CG17828-PB 591 mod(r)-RB 1..408 17..424 2040 100 Plus
CG17828-PD 591 mod(r)-RD 1..408 17..424 2040 100 Plus
CG17828-PB 591 mod(r)-RB 408..588 436..616 905 100 Plus
CG17828-PD 591 mod(r)-RD 408..588 436..616 905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RF 1294 CG17828-RF 269..868 17..616 3000 100 Plus
mod(r)-RC 1332 CG17828-RC 307..906 17..616 3000 100 Plus
mod(r)-RA 1343 CG17828-RA 318..917 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 621891..622151 17..277 1290 99.6 Plus
X 23542271 X 622433..622625 424..616 965 100 Plus
X 23542271 X 622207..622359 273..425 765 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:45:30 has no hits.

BO18291.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:03 Download gff for BO18291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17828-PC 1..603 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:50 Download gff for BO18291.5prime
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 313..924 12..624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:12 Download gff for BO18291.5prime
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 313..924 12..624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:12 Download gff for BO18291.5prime
Subject Subject Range Query Range Percent Splice Strand
X 621886..622146 12..272 99 -> Plus
X 622207..622358 273..424 100 -> Plus
X 622434..622632 425..624 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:50 Download gff for BO18291.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 515919..516179 12..272 99 -> Plus
arm_X 516240..516391 273..424 100 -> Plus
arm_X 516467..516665 425..624 98   Plus

BO18291.complete Sequence

634 bp assembled on 2006-10-11

GenBank Submission: FJ634375

> BO18291.complete
GAAGTTATCAGTCGACATGCCGACTACACCACAGGATCTTGCCCTTGCCC
ACTCTCTTGCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAG
GAGGCCGGCGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGA
CGAACTGAAACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCG
AGGAGATGTCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATG
GACCAGGTGGAGATTATATCAAGAGAGAACGAGTGCAAGGGCATTCATCT
GGTAGAGCTGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACC
TAGGCGAGAAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGAT
GAATACGCGCCTCAGCATATCAGGGAGCTTCTTCAGATTGCAGCTTCCAA
TGCCGATGGCGACTGCGATCGTCACGTGGAGCACTTCCTGAACGGAAAGA
CCGACGTGCAGACTTTCCTCAACACGTACCAGTGGTCGAAGAAGATCAGT
ACCGAGCGCAAGGCCAAAGAGGAGCGCCTGGGCACCCAGCTCAGTGCTCT
GGAGCGGGCCGGTATCGCAAGCTTTCTAGACCAT

BO18291.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RF 603 CG17828-PF 1..600 17..616 3000 100 Plus
mod(r)-RC 603 CG17828-PC 1..600 17..616 3000 100 Plus
mod(r)-RA 603 CG17828-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RF 1294 CG17828-RF 269..868 17..616 3000 100 Plus
mod(r)-RC 1332 CG17828-RC 307..906 17..616 3000 100 Plus
mod(r)-RA 1343 CG17828-RA 318..917 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 621891..622151 17..277 1290 99.6 Plus
X 23542271 X 622433..622625 424..616 965 100 Plus
X 23542271 X 622207..622359 273..425 765 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:52:22 has no hits.

BO18291.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:10 Download gff for BO18291.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RC 1..603 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:14 Download gff for BO18291.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RC 296..907 12..624 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:20 Download gff for BO18291.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 318..917 17..618 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:10 Download gff for BO18291.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RC 296..907 12..624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:09 Download gff for BO18291.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RA 318..917 17..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:09 Download gff for BO18291.complete
Subject Subject Range Query Range Percent Splice Strand
X 621891..622146 17..272 100 -> Plus
X 622207..622358 273..424 100 -> Plus
X 622434..622625 425..618 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:20 Download gff for BO18291.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 515924..516179 17..272 100 -> Plus
arm_X 516240..516391 273..424 100 -> Plus
arm_X 516467..516658 425..618 98   Plus

BO18291.pep Sequence

Translation from 16 to 634

> BO18291.pep
MPTTPQDLALAHSLAQRPPTDSSEAKEQEAGESDNLPNLCTLSLDELKQL
DRDPEFFEDFIEEMSVVQYLNEELDSMMDQVEIISRENECKGIHLVELKR
RLSDDFTALKNLGEKCDRLNKKYFKKSDEYAPQHIRELLQIAASNADGDC
DRHVEHFLNGKTDVQTFLNTYQWSKKISTERKAKEERLGTQLSALERAGI
ASFLDH

BO18291.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-PF 200 CG17828-PF 1..200 1..200 1034 100 Plus
mod(r)-PC 200 CG17828-PC 1..200 1..200 1034 100 Plus
mod(r)-PA 200 CG17828-PA 1..200 1..200 1034 100 Plus
mod(r)-PE 196 CG17828-PE 1..196 1..200 1001 98 Plus
mod(r)-PD 196 CG17828-PD 1..196 1..200 1001 98 Plus