Clone Sequence Records
BO18294.3prime Sequence
476 bp (476 high quality bases) assembled on 2006-10-13
> BO18294.3prime
ATGGTCTAGAAAGCTTGCGATGGAGTTGGGCAACTGGCAGGCGCGCACAG
CCACGAGCTGCAACAGAACGAAGATCGGCGAGAAGACCTCCGAATACTCG
AGGCCCGTCTTGCTGGATAGCTTCAGGCAGAGCAGGTACTTGAAGATGGC
GATGAGCACCAGGAAATACGTGCTCCACATGAAGCGATGCAGGGCTTTGC
GCTTGTTGTTAGAGTCCAGGTACATGCGGATGCCCACAATGACGCAAAAG
TACGCGTTGCAGATGTCGATGAAGAACAGGGGGCTGAAGACGGTGAACCA
GTCGCCCATGGGCTCCGGGAGTATGCCACCGGGTCCGGCCCTGGCCTGCA
GATGGAGCTTGACGGTCAGCGTGATGGTGAACACCAGCAGGCCGCACAGA
TTGACCAGAATCTCGAACTCGGTGAGCCCCAGCCAGCGCACCAGCTCCGA
GAGTTTGAACATGTCGACTGATAACT
BO18294.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33932-PA | 447 | CG33932-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp20-RB | 1395 | CG33931-RB | 603..1047 | 463..19 | 2225 | 100 | Minus |
Rpp20-RA | 1244 | CG33931-RA | 603..1047 | 463..19 | 2225 | 100 | Minus |
CG33932-RB | 1395 | CG33932-RB | 603..1047 | 463..19 | 2225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19745106..19745550 | 463..19 | 2225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:07:02 has no hits.
BO18294.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:05 Download gff for
BO18294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-PA | 1..447 | 15..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:43 Download gff for
BO18294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 597..1050 | 15..470 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:05 Download gff for
BO18294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-RB | 597..1050 | 15..470 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:05 Download gff for
BO18294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19745103..19745553 | 15..468 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:43 Download gff for
BO18294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19639136..19639586 | 15..468 | 98 | | Minus |
BO18294.5prime Sequence
476 bp (476 high quality bases) assembled on 2006-10-13
> BO18294.5prime
GAAGTTATCAGTCGACATGTTCAAACTCTCGGAGCTGGTGCGCTGGCTGG
GGCTCACCGAGTTCGAGATTCTGGTCAATCTGTGCGGCCTGCTGGTGTTC
ACCATCACGCTGACCGTCAAGCTCCATCTGCAGGCCAGGGCCGGACCCGG
TGGCATACTCCCGGAGCCCATGGGCGACTGGTTCACCGTCTTCAGCCCCC
TGTTCTTCATCGACATCTGCAACGCGTACTTTTGCGTCATTGTGGGCATC
CGCATGTACCTGGACTCTAACAACAAGCGCAAAGCCCTGCATCGCTTCAT
GTGGAGCACGTATTTCCTGGTGCTCATCGCCATCTTCAAGTACCTGCTCT
GCCTGAAGCTATCCAGCAAGACGGGCCTCGAGTATTCGGAGGTCTTCTCG
CCGATCTTCGTTCTGTTGCAGCTCGTGGCTGTGCGCGCCTGCCAGTTGCC
CAACTCCATCGCAAGCTTTCTAGACC
BO18294.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33932-PA | 447 | CG33932-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp20-RB | 1395 | CG33931-RB | 603..1047 | 16..460 | 2225 | 100 | Plus |
Rpp20-RA | 1244 | CG33931-RA | 603..1047 | 16..460 | 2225 | 100 | Plus |
CG33932-RB | 1395 | CG33932-RB | 603..1047 | 16..460 | 2225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19745106..19745550 | 16..460 | 2225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:32:01 has no hits.
BO18294.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:06 Download gff for
BO18294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-PA | 1..447 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:36 Download gff for
BO18294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 597..1050 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:43 Download gff for
BO18294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-RB | 597..1050 | 9..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:43 Download gff for
BO18294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19745103..19745553 | 11..464 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:36 Download gff for
BO18294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19639136..19639586 | 11..464 | 98 | | Plus |
BO18294.complete Sequence
478 bp assembled on 2006-10-11
GenBank Submission: FJ634376
> BO18294.complete
GAAGTTATCAGTCGACATGTTCAAACTCTCGGAGCTGGTGCGCTGGCTGG
GGCTCACCGAGTTCGAGATTCTGGTCAATCTGTGCGGCCTGCTGGTGTTC
ACCATCACGCTGACCGTCAAGCTCCATCTGCAGGCCAGGGCCGGACCCGG
TGGCATACTCCCGGAGCCCATGGGCGACTGGTTCACCGTCTTCAGCCCCC
TGTTCTTCATCGACATCTGCAACGCGTACTTTTGCGTCATTGTGGGCATC
CGCATGTACCTGGACTCTAACAACAAGCGCAAAGCCCTGCATCGCTTCAT
GTGGAGCACGTATTTCCTGGTGCTCATCGCCATCTTCAAGTACCTGCTCT
GCCTGAAGCTATCCAGCAAGACGGGCCTCGAGTATTCGGAGGTCTTCTCG
CCGATCTTCGTTCTGTTGCAGCTCGTGGCTGTGCGCGCCTGCCAGTTGCC
CAACTCCATCGCAAGCTTTCTAGACCAT
BO18294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33932-RB | 447 | CG33932-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
CG33932-RA | 447 | CG33932-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp20-RB | 1395 | CG33931-RB | 603..1047 | 16..460 | 2225 | 100 | Plus |
Rpp20-RA | 1244 | CG33931-RA | 603..1047 | 16..460 | 2225 | 100 | Plus |
CG33932-RB | 1395 | CG33932-RB | 603..1047 | 16..460 | 2225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19745106..19745550 | 16..460 | 2225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:47:04 has no hits.
BO18294.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:06 Download gff for
BO18294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-RA | 1..447 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:20 Download gff for
BO18294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 595..1048 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:01 Download gff for
BO18294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 609..1047 | 22..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:06 Download gff for
BO18294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp20-RA | 595..1048 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:19 Download gff for
BO18294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33932-RB | 609..1047 | 22..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:19 Download gff for
BO18294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19745112..19745550 | 22..462 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:01 Download gff for
BO18294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19639145..19639583 | 22..462 | 99 | | Plus |
BO18294.pep Sequence
Translation from 16 to 478
> BO18294.pep
MFKLSELVRWLGLTEFEILVNLCGLLVFTITLTVKLHLQARAGPGGILPE
PMGDWFTVFSPLFFIDICNAYFCVIVGIRMYLDSNNKRKALHRFMWSTYF
LVLIAIFKYLLCLKLSSKTGLEYSEVFSPIFVLLQLVAVRACQLPNSIAS
FLDH
BO18294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33932-PB | 148 | CG33932-PB | 1..148 | 1..148 | 770 | 100 | Plus |
CG33932-PA | 148 | CG33932-PA | 1..148 | 1..148 | 770 | 100 | Plus |