Clone BO18294 Report

Search the DGRC for BO18294

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG33932-RA
Protein status:BO18294.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO18294.3prime Sequence

476 bp (476 high quality bases) assembled on 2006-10-13

> BO18294.3prime
ATGGTCTAGAAAGCTTGCGATGGAGTTGGGCAACTGGCAGGCGCGCACAG
CCACGAGCTGCAACAGAACGAAGATCGGCGAGAAGACCTCCGAATACTCG
AGGCCCGTCTTGCTGGATAGCTTCAGGCAGAGCAGGTACTTGAAGATGGC
GATGAGCACCAGGAAATACGTGCTCCACATGAAGCGATGCAGGGCTTTGC
GCTTGTTGTTAGAGTCCAGGTACATGCGGATGCCCACAATGACGCAAAAG
TACGCGTTGCAGATGTCGATGAAGAACAGGGGGCTGAAGACGGTGAACCA
GTCGCCCATGGGCTCCGGGAGTATGCCACCGGGTCCGGCCCTGGCCTGCA
GATGGAGCTTGACGGTCAGCGTGATGGTGAACACCAGCAGGCCGCACAGA
TTGACCAGAATCTCGAACTCGGTGAGCCCCAGCCAGCGCACCAGCTCCGA
GAGTTTGAACATGTCGACTGATAACT

BO18294.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33932-PA 447 CG33932-RA 1..444 462..19 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp20-RB 1395 CG33931-RB 603..1047 463..19 2225 100 Minus
Rpp20-RA 1244 CG33931-RA 603..1047 463..19 2225 100 Minus
CG33932-RB 1395 CG33932-RB 603..1047 463..19 2225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19745106..19745550 463..19 2225 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:07:02 has no hits.

BO18294.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:05 Download gff for BO18294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33932-PA 1..447 15..462 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:43 Download gff for BO18294.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 597..1050 15..470 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:05 Download gff for BO18294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33932-RB 597..1050 15..470 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:05 Download gff for BO18294.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19745103..19745553 15..468 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:43 Download gff for BO18294.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19639136..19639586 15..468 98   Minus

BO18294.5prime Sequence

476 bp (476 high quality bases) assembled on 2006-10-13

> BO18294.5prime
GAAGTTATCAGTCGACATGTTCAAACTCTCGGAGCTGGTGCGCTGGCTGG
GGCTCACCGAGTTCGAGATTCTGGTCAATCTGTGCGGCCTGCTGGTGTTC
ACCATCACGCTGACCGTCAAGCTCCATCTGCAGGCCAGGGCCGGACCCGG
TGGCATACTCCCGGAGCCCATGGGCGACTGGTTCACCGTCTTCAGCCCCC
TGTTCTTCATCGACATCTGCAACGCGTACTTTTGCGTCATTGTGGGCATC
CGCATGTACCTGGACTCTAACAACAAGCGCAAAGCCCTGCATCGCTTCAT
GTGGAGCACGTATTTCCTGGTGCTCATCGCCATCTTCAAGTACCTGCTCT
GCCTGAAGCTATCCAGCAAGACGGGCCTCGAGTATTCGGAGGTCTTCTCG
CCGATCTTCGTTCTGTTGCAGCTCGTGGCTGTGCGCGCCTGCCAGTTGCC
CAACTCCATCGCAAGCTTTCTAGACC

BO18294.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33932-PA 447 CG33932-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp20-RB 1395 CG33931-RB 603..1047 16..460 2225 100 Plus
Rpp20-RA 1244 CG33931-RA 603..1047 16..460 2225 100 Plus
CG33932-RB 1395 CG33932-RB 603..1047 16..460 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19745106..19745550 16..460 2225 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:32:01 has no hits.

BO18294.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:06 Download gff for BO18294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33932-PA 1..447 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:36 Download gff for BO18294.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 597..1050 9..464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:43 Download gff for BO18294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33932-RB 597..1050 9..464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:43 Download gff for BO18294.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19745103..19745553 11..464 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:36 Download gff for BO18294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19639136..19639586 11..464 98   Plus

BO18294.complete Sequence

478 bp assembled on 2006-10-11

GenBank Submission: FJ634376

> BO18294.complete
GAAGTTATCAGTCGACATGTTCAAACTCTCGGAGCTGGTGCGCTGGCTGG
GGCTCACCGAGTTCGAGATTCTGGTCAATCTGTGCGGCCTGCTGGTGTTC
ACCATCACGCTGACCGTCAAGCTCCATCTGCAGGCCAGGGCCGGACCCGG
TGGCATACTCCCGGAGCCCATGGGCGACTGGTTCACCGTCTTCAGCCCCC
TGTTCTTCATCGACATCTGCAACGCGTACTTTTGCGTCATTGTGGGCATC
CGCATGTACCTGGACTCTAACAACAAGCGCAAAGCCCTGCATCGCTTCAT
GTGGAGCACGTATTTCCTGGTGCTCATCGCCATCTTCAAGTACCTGCTCT
GCCTGAAGCTATCCAGCAAGACGGGCCTCGAGTATTCGGAGGTCTTCTCG
CCGATCTTCGTTCTGTTGCAGCTCGTGGCTGTGCGCGCCTGCCAGTTGCC
CAACTCCATCGCAAGCTTTCTAGACCAT

BO18294.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33932-RB 447 CG33932-PB 1..444 17..460 2220 100 Plus
CG33932-RA 447 CG33932-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp20-RB 1395 CG33931-RB 603..1047 16..460 2225 100 Plus
Rpp20-RA 1244 CG33931-RA 603..1047 16..460 2225 100 Plus
CG33932-RB 1395 CG33932-RB 603..1047 16..460 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19745106..19745550 16..460 2225 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:47:04 has no hits.

BO18294.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:06 Download gff for BO18294.complete
Subject Subject Range Query Range Percent Splice Strand
CG33932-RA 1..447 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:20 Download gff for BO18294.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 595..1048 9..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:01 Download gff for BO18294.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 609..1047 22..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:06 Download gff for BO18294.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp20-RA 595..1048 9..464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:19 Download gff for BO18294.complete
Subject Subject Range Query Range Percent Splice Strand
CG33932-RB 609..1047 22..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:19 Download gff for BO18294.complete
Subject Subject Range Query Range Percent Splice Strand
X 19745112..19745550 22..462 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:01 Download gff for BO18294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19639145..19639583 22..462 99   Plus

BO18294.pep Sequence

Translation from 16 to 478

> BO18294.pep
MFKLSELVRWLGLTEFEILVNLCGLLVFTITLTVKLHLQARAGPGGILPE
PMGDWFTVFSPLFFIDICNAYFCVIVGIRMYLDSNNKRKALHRFMWSTYF
LVLIAIFKYLLCLKLSSKTGLEYSEVFSPIFVLLQLVAVRACQLPNSIAS
FLDH

BO18294.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33932-PB 148 CG33932-PB 1..148 1..148 770 100 Plus
CG33932-PA 148 CG33932-PA 1..148 1..148 770 100 Plus