Clone Sequence Records
BO18308.3prime Sequence
783 bp (740 high quality bases) assembled on 2006-10-13
> BO18308.3prime
ATGGTCTAGAAAGCTTGCAAGATTGCCCACCCTACGATCAAACTCGTCCT
TGTGCTCGTTCTTTAGATACTTCCGCATCCCGACGAGCATGTAGCGCACT
TTGGGTGCGGACAGGACATCCAGGAGTATGGCCATCAGGGCCTGAAAGCT
CTCATAGGTGCCATTCTTGTACTCCAGCAGCGCCTTGCCAAAGCGGCGGA
ATTGATCTTGGGTGACCAGGCTGCGTAGCTCCCGGAGAAACGCGGCCCTT
TCCTCGGGTGCCTCCTTAGCCTGCGAACTACTTGGCTCCACCTTGATGTT
CTCCACCAACTTGTATCGCTTTTTGGTCACCTGGCTGGAGGATTCCGGCG
CCGTTGGTGAGCTTCGCTCCCGCTTGTGAATCTTCACCAGACCAGAGGAG
CCACTTTTACTATCTGTGCAGCAGTTGAAATCGATACTCGAGACATTTGA
GTCCAGTCGACTCATAAAGTCCATGGCATTCGGCGCCGCACCACCCAATT
TATGTCCAGCGGCACTCGCATAATCGGCGGGTGTCCATGTCTTGATGGAA
TTGGCCATCTCCACTTTGATTGCGGATTCATTGGCTGATTTGAAGGTGGC
ATTGGAGCCAGGCTCCCGTTTCACTTTTGGAATGGCGGCTAGTGGTTTCA
TCCTCTGTCTTGCAGACGGTTTCCAAAGGCGAATCGGTTTCCCTTTCATC
CGGTAGTTTCATATTCGCTTCGGCGTTCTTAAAGAACTGACGCAGTTCCC
GGACGATAGGACCAAAGGGTGAGCACTGTGGCC
BO18308.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4078-PA | 2958 | CG4078-RA | 2192..2955 | 783..19 | 3785 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4078-RB | 3603 | CG4078-RB | 2314..3077 | 783..19 | 3800 | 99.9 | Minus |
| CG4078-RA | 3308 | CG4078-RA | 2314..3077 | 783..19 | 3800 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5751340..5751551 | 230..19 | 1060 | 100 | Minus |
| X | 23542271 | X | 5751063..5751273 | 439..229 | 1055 | 100 | Minus |
| X | 23542271 | X | 5750462..5750604 | 712..569 | 670 | 99.3 | Minus |
| X | 23542271 | X | 5750849..5750978 | 568..439 | 650 | 100 | Minus |
| X | 23542271 | X | 5750330..5750400 | 783..713 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:36:37 has no hits.
BO18308.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:13 Download gff for
BO18308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-PA | 2192..2958 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:27:56 Download gff for
BO18308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-RA | 2314..3080 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:33 Download gff for
BO18308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-RA | 2314..3080 | 15..783 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:33 Download gff for
BO18308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5750330..5750400 | 713..783 | 100 | -> | Minus |
| X | 5750462..5750604 | 569..712 | 99 | -> | Minus |
| X | 5750849..5750978 | 439..568 | 100 | -> | Minus |
| X | 5751064..5751273 | 229..438 | 100 | -> | Minus |
| X | 5751342..5751554 | 15..228 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:27:56 Download gff for
BO18308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5644363..5644433 | 713..783 | 100 | -> | Minus |
| arm_X | 5644495..5644637 | 569..712 | 99 | -> | Minus |
| arm_X | 5644882..5645011 | 439..568 | 100 | -> | Minus |
| arm_X | 5645097..5645306 | 229..438 | 100 | -> | Minus |
| arm_X | 5645375..5645587 | 15..228 | 99 | | Minus |
BO18308.5prime Sequence
790 bp (716 high quality bases) assembled on 2006-10-13
> BO18308.5prime
GAAGTTATCAGTCGACATGCCGGAGAGCCTGATCGCCGGCATTCCGGTGC
ACTTTCCGTTCGAGCCGTACCCGGTTCAACGGGCGTACATGGAGAAGGTG
ATCCATTGTCTCCGCGATGGCACGAATGGAGTCCTGGAATCGCCAACCGG
CACGGGCAAGACCCTAAGCTTGCTGTGCTCATCCTTGGCCTGGATCCGCA
CCAGGCAATCGGAGCACCAAAAGCAGATGGTTAAGATGGAGAAGGCAGAT
TTTTCGGGTCTTGGAGGCGGAGCACCTGGGGGAGACCTGTCCGAGCTGGC
CAAGACCATGGGTCGTGCGAATAACTGGGGCGTGCCCAAGGTCATCTACG
CCTCGCGCACCCACTCCCAATTGACGCAGGCGATGCGGGAACTCAAGAGG
ACAGCGTACGCTAACATGAGATCCGTGGTTCTGGGCTCCCGCGATCAGCT
ATGCATTCATCCGGAGGTCATGCGGGAGCAGGGCAACTCCAACAAGACCA
ACATGTGCAAGCTACGGGTGCACTCCAAGACCTGTTCATTTCAAATGCGC
GTTGAGTCGCGAAAGGATCATCCCGATTTGCGCGGACCCACCATCATGGA
CATTGAGGACCTGGTCAAGGTGGGCCAGCGACTCAAGATCTGTCCCTACT
TCGCGTCTCGGGAGTTGGTTCCCCAGGCGGATATCACCTTCATGCCCTAC
AATTATCTACTCGATCCCAAGGCTCGCAAGGCCAACAAAATCGAACTGGG
CAACACTATTGTGATCCTGGATGAGGCCCACAACATCGAG
BO18308.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4078-PA | 2958 | CG4078-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4078-RB | 3603 | CG4078-RB | 123..896 | 17..790 | 3870 | 100 | Plus |
| CG4078-RA | 3308 | CG4078-RA | 123..896 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5747869..5748642 | 17..790 | 3870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:03:03 has no hits.
BO18308.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:13 Download gff for
BO18308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:04:27 Download gff for
BO18308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-RA | 123..896 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:18 Download gff for
BO18308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-RA | 123..896 | 17..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:18 Download gff for
BO18308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5747869..5748642 | 17..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:04:27 Download gff for
BO18308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5641902..5642675 | 17..790 | 100 | | Plus |
BO18308.complete Sequence
2989 bp assembled on 2007-03-23
GenBank Submission: FJ634377
> BO18308.complete
GAAGTTATCAGTCGACATGCCGGAGAGCCTGATCGCCGGCATTCCGGTGC
ACTTTCCGTTCGAGCCGTACCCGGTTCAACGGGCGTACATGGAGAAGGTG
ATCCATTGTCTCCGCGATGGCACGAATGGAGTCCTGGAATCGCCAACCGG
CACGGGCAAGACCCTAAGCTTGCTGTGCTCATCCTTGGCCTGGATCCGCA
CCAGGCAATCGGAGCACCAAAAGCAGATGGTTAAGATGGAGAAGGCAGAT
TTTTCGGGTCTTGGAGGCGGAGCACCTGGGGGAGACCTGTCCGAGCTGGC
CAAGACCATGGGTCGTGCGAATAACTGGGGCGTGCCCAAGGTCATCTACG
CCTCGCGCACCCACTCCCAATTGACGCAGGCGATGCGGGAACTCAAGAGG
ACAGCGTACGCTAACATGAGATCCGTGGTTCTGGGCTCCCGCGATCAGCT
ATGCATTCATCCGGAGGTCATGCGGGAGCAGGGCAACTCCAACAAGACCA
ACATGTGCAAGCTACGGGTGCACTCCAAGACCTGTTCATTTCAAATGCGC
GTTGAGTCGCGAAAGGATCATCCCGATTTGCGCGGACCCACCATCATGGA
CATTGAGGACCTGGTCAAGGTGGGCCAGCGACTCAAGATCTGTCCCTACT
TCGCGTCTCGGGAGTTGGTTCCCCAGGCGGATATCACCTTCATGCCCTAC
AATTATCTACTCGATCCCAAGGCTCGCAAGGCCAACAAAATCGAACTGGG
CAACACTATTGTGATCCTGGATGAGGCCCACAACATCGAGAAGATCTGCG
AGGAGTCCGCTTCGGTGCAGATTAAGTCCTCTGATGTGGCCATGGCCATC
GAGGACGTCACGCATATCATGCAAGTCTTTGCGAGCGGCGAGTCGCAGGA
TATGGCTGGAGATGAGCCAAAGGACTTCACACTGGACGACCTTACACTGC
TCAAGGAGATGCTGCTCGAGCTCGAAAAGGCCATCGATGCCATCGTTGTG
GACAACGCCGTCGATGGAACTACCTTTCCCGCCTCCATGATGTACGAACT
GCTTGGCAAGGCGAATTTCACCTACGGCAACGTTGCAACGATAGTATCCC
TGCTGGACAAACTGGTGCAATACCTCCTAGTGGCCTCCCAGCAGATGAGC
ATCCGCAAGGGCGGCACCTTCACGTTGCTTAGCGATCTACTGACCATTGT
GTTTGCCAACAAGGAGGATGTGATGAGCAAGGTGTACGCAAGCTTCAAAG
TGCATGTCCTGGTGGAGGAGTCCAAGCAGGGACACGGTAAGCAGCAGGGT
GCTAAACAGCAGGGCGGTTGGCTTGGCAAGGGAACGATTGCAGCAGCGAC
TGGCTTAAGCAAGGTCGCAAAAATCATTAACTTCTGGTGCTTCAATCCTG
GCTTCGGAATGGAGCAACTGCTCAACACCCAAGTGCGCAGCGTAATCCTG
ACCAGCGGCACACTAGCTCCCCTCAAGCCGCTAATCGCCGAGCTTGCCAT
TCCGGTGGCCCAGCATCTGGAGAATCCGCACATCGTCGACCAGTCGCAGG
TTTATGTCAAGATCATCGGCACCGGACCCGATCGGCAGCAACTGATATCG
AACTATGCGAACCGTGATAATCCAAAGTACATCAGCTCCCTGGGACAGAC
GATTCTGAATGTAGCGCGTATAGTGCCCGACGGCCTCCTTGTCTTTTTCC
CATCGTATCCCATGTTGAACAAGTGCGTGGACGCGTGGCAGGCCAGTGGT
TTGTGGGCGGACATATCGTGCAAGAAACCGATTTTTCTGGAGCCGCGCAG
CAAGGACCAGTTCACCAGCACGATGGAAGAGTTCTACCAGGCGATACGCG
ACTCCAAGGGTGCCGTATTCATGGCTGTTTGTCGCGGCAAAGTCTCCGAA
GGTCTGGACTTTGCTGATCGCAATGGCCGCGCGGTGATTATTACTGGTCT
GCCATTCCCACCGCTAAAGGATCCCAAGGTGATACTGAAACGTCGCTACC
TGGAGGCGAATCGGACTCGTGAGAATCAGCTGTTAAGTGGGCAGGAATGG
TACAATCTAGATGCCACGAGGGCAGTCAATCAAGCCATCGGTCGTGTGAT
TCGGCATCGCAACGATTATGGTGCCATTCTGCTTTGCGACTCGCGATTTA
AGGACGCCTCACAGGTCCAGCAGCTATCCAAATGGATTCGGGGTCACCTG
GGCGACCGGCCACAGTGCTCACCCTTTGGTCCTATCGTCCGGGAACTGCG
TCAGTTCTTTAAGAACGCCGAAGCGAATATGAAACTACCGGATGAAAGGG
AAACCGATTCGCCTTTGGAAACCGTCTGCAAGACAGAGGATGAACCACTA
GCCGCCATTCCAAAAGTGAAACGGGAGCCTGGCTCCAATGCCACCTTCAA
ATCAGCCAATGAATCCGCAATCAAAGTGGAGATGGCCAATTCCATCAAGA
CATGGACACCCGCCGATTATGCGAGTGCCGCTGGACATAAATTGGGTGGT
GCGGCGCCGAATGCCATGGACTTTATGAGTCGACTGGACTCAAATGTCTC
GAGTATCGATTTCAACTGCTGCACAGATAGTAAAAGTGGCTCCTCTGGTC
TGGTGAAGATTCACAAGCGGGAGCGAAGCTCACCAACGGCGCCGGAATCC
TCCAGCCAGGTGACCAAAAAGCGATACAAGTTGGTGGAGAACATCAAGGT
GGAGCCAAGTAGTTCGCAGGCTAAGGAGGCACCCGAGGAAAGGGCCGCGT
TTCTCCGGGAGCTACGCAGCCTGGTCACCCAAGATCAATTCCGCCGCTTT
GGCAAGGCGCTGCTGGAGTACAAGAATGGCACCTATGAGAGCTTTCAGGC
CCTGATGGCCATACTCCTGGATGTCCTGTCCGCACCCAAAGTGCGCTACA
TGCTCGTCGGGATGCGGAAGTATCTAAAGAACGAGCACAAGGACGAGTTT
GATCGTAGGGTGGGCAATCTTGCAAGCTTTCTAGACCAT
BO18308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4078-RB | 2958 | CG4078-PB | 1..2955 | 17..2971 | 14775 | 100 | Plus |
| CG4078-RA | 2958 | CG4078-PA | 1..2955 | 17..2971 | 14775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4078-RB | 3603 | CG4078-RB | 123..3077 | 17..2971 | 14775 | 100 | Plus |
| CG4078-RA | 3308 | CG4078-RA | 123..3077 | 17..2971 | 14775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5747869..5748918 | 17..1066 | 5250 | 100 | Plus |
| X | 23542271 | X | 5749736..5750400 | 1614..2278 | 3325 | 100 | Plus |
| X | 23542271 | X | 5748994..5749541 | 1067..1614 | 2740 | 100 | Plus |
| X | 23542271 | X | 5751340..5751551 | 2760..2971 | 1060 | 100 | Plus |
| X | 23542271 | X | 5751063..5751273 | 2551..2761 | 1055 | 100 | Plus |
| X | 23542271 | X | 5750462..5750604 | 2279..2421 | 715 | 100 | Plus |
| X | 23542271 | X | 5750849..5750978 | 2422..2551 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:52:19 has no hits.
BO18308.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:13 Download gff for
BO18308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-RA | 1..2958 | 17..2975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:13 Download gff for
BO18308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-RA | 121..3078 | 17..2975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:25 Download gff for
BO18308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-RA | 123..3077 | 17..2973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:13 Download gff for
BO18308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-RA | 121..3078 | 17..2975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:00 Download gff for
BO18308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4078-RA | 123..3077 | 17..2973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:00 Download gff for
BO18308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5751064..5751273 | 2552..2761 | 100 | -> | Plus |
| X | 5751342..5751551 | 2762..2973 | 99 | | Plus |
| X | 5747869..5748918 | 17..1066 | 100 | -> | Plus |
| X | 5748994..5749541 | 1067..1614 | 100 | -> | Plus |
| X | 5749737..5750400 | 1615..2278 | 100 | -> | Plus |
| X | 5750462..5750604 | 2279..2421 | 100 | -> | Plus |
| X | 5750849..5750978 | 2422..2551 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:25 Download gff for
BO18308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5641902..5642951 | 17..1066 | 100 | -> | Plus |
| arm_X | 5643027..5643574 | 1067..1614 | 100 | -> | Plus |
| arm_X | 5643770..5644433 | 1615..2278 | 100 | -> | Plus |
| arm_X | 5644495..5644637 | 2279..2421 | 100 | -> | Plus |
| arm_X | 5644882..5645011 | 2422..2551 | 100 | -> | Plus |
| arm_X | 5645097..5645306 | 2552..2761 | 100 | -> | Plus |
| arm_X | 5645375..5645584 | 2762..2973 | 99 | | Plus |
BO18308.pep Sequence
Translation from 16 to 2989
> BO18308.pep
MPESLIAGIPVHFPFEPYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTL
SLLCSSLAWIRTRQSEHQKQMVKMEKADFSGLGGGAPGGDLSELAKTMGR
ANNWGVPKVIYASRTHSQLTQAMRELKRTAYANMRSVVLGSRDQLCIHPE
VMREQGNSNKTNMCKLRVHSKTCSFQMRVESRKDHPDLRGPTIMDIEDLV
KVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELGNTIVI
LDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQDMAGDE
PKDFTLDDLTLLKEMLLELEKAIDAIVVDNAVDGTTFPASMMYELLGKAN
FTYGNVATIVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKE
DVMSKVYASFKVHVLVEESKQGHGKQQGAKQQGGWLGKGTIAAATGLSKV
AKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQH
LENPHIVDQSQVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVA
RIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISCKKPIFLEPRSKDQFT
STMEEFYQAIRDSKGAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPL
KDPKVILKRRYLEANRTRENQLLSGQEWYNLDATRAVNQAIGRVIRHRND
YGAILLCDSRFKDASQVQQLSKWIRGHLGDRPQCSPFGPIVRELRQFFKN
AEANMKLPDERETDSPLETVCKTEDEPLAAIPKVKREPGSNATFKSANES
AIKVEMANSIKTWTPADYASAAGHKLGGAAPNAMDFMSRLDSNVSSIDFN
CCTDSKSGSSGLVKIHKRERSSPTAPESSSQVTKKRYKLVENIKVEPSSS
QAKEAPEERAAFLRELRSLVTQDQFRRFGKALLEYKNGTYESFQALMAIL
LDVLSAPKVRYMLVGMRKYLKNEHKDEFDRRVGNLASFLDH
BO18308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4078-PB | 985 | CG4078-PB | 1..985 | 1..985 | 5069 | 100 | Plus |
| CG4078-PA | 985 | CG4078-PA | 1..985 | 1..985 | 5069 | 100 | Plus |
| Xpd-PA | 769 | CG9433-PA | 5..703 | 6..730 | 537 | 24.9 | Plus |
| CG11403-PA | 861 | CG11403-PA | 582..859 | 472..749 | 346 | 30.6 | Plus |
| CG11403-PA | 861 | CG11403-PA | 189..437 | 108..351 | 217 | 27.8 | Plus |
