Clone Sequence Records
BO18310.3prime Sequence
733 bp (707 high quality bases) assembled on 2006-10-13
> BO18310.3prime
ATGGTCTAGAAAGCTTGCCTTGAACACCGCCTGGCTGGCCTTATTAACAA
TCATCTGCAAGTTCTCGTGCAGCGTTTTGATCTGGTTAAGGGTGTCCTCG
TCCAGGTTCTCCAACAGATTTGACTCCACCTCGTCGGCATCCAGTTTTTT
GGGCCGCAAGCTAAGAACTCCGTTCCGAATGGGTATGTTCACATTGGCGA
ACTTGTCTGGCATTACTTGAGCCACCATGGGACTGCCGTATTTGGATAGT
GCCACCTCGCCGGGCTTGGGATAGCGCAGGAATGCCATCGGCGGTGTAGT
TGGCGATCCGGAGCGCATTTGCTTCTGTTTCAAAGGAGTGCGGTCGGCAC
TGAAGGCCTTCGCACGCGAGGCCATCGGTGTGCGCAGTTTGCTGCGCGAA
TTGCGGCTGCTGCTGCTGCTGCTCGAAATTGACGGCGGTTTGGCCGAGTG
CAATATGTTGAGATCCCCGCAGGCGGAACGACTGCGCCGCGCTCGACGAG
CCCTCGCCGAGTGCAGTGGTCCGGGTGTGCGCATGGCCTTCGTGGACCGC
AGCAGGGAGCCTGTGTGGGCGGCCAGGATGCTCCCACCGCTGGCACCGAT
GCTGCTGTCCTCTGTAAGGTAGCCTTCGTCATTGCGACTTCCAGTGGCGG
AGGGGGCGTGGCCCTCGATGGCGCTGCCACTCATGGACATCGAGGCGAGC
AGCTGCGTCTGATCGCTGGCCTTGAAATCGCTG
BO18310.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4454-PB | 960 | Borr-RB | 243..957 | 733..19 | 3550 | 99.8 | Minus |
CG4454-PA | 948 | Borr-RA | 351..945 | 613..19 | 2975 | 100 | Minus |
CG4454-PA | 948 | Borr-RA | 243..352 | 733..624 | 525 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RB | 1298 | CG4454-RB | 375..1089 | 733..19 | 3560 | 99.9 | Minus |
borr-RA | 1286 | CG4454-RA | 375..1077 | 733..19 | 3370 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252352 | 215..625 | 2055 | 100 | Plus |
2L | 23513712 | 2L | 9251681..9251876 | 19..214 | 980 | 100 | Plus |
2L | 23513712 | 2L | 9252634..9252744 | 623..733 | 540 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:54:35 has no hits.
BO18310.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:15 Download gff for
BO18310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4454-PB | 243..960 | 18..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:59 Download gff for
BO18310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 375..1097 | 9..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:03 Download gff for
BO18310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 375..1097 | 9..733 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:03 Download gff for
BO18310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251673..9251876 | 9..214 | 98 | <- | Plus |
2L | 9251942..9252350 | 215..623 | 100 | <- | Plus |
2L | 9252635..9252744 | 624..733 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:59 Download gff for
BO18310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251673..9251876 | 9..214 | 98 | <- | Plus |
arm_2L | 9251942..9252350 | 215..623 | 100 | <- | Plus |
arm_2L | 9252635..9252744 | 624..733 | 99 | | Plus |
BO18310.5prime Sequence
753 bp (709 high quality bases) assembled on 2006-10-13
> BO18310.5prime
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCC
AGCGGTGGGAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCAC
GAAGGCCATGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAG
CGCGGCGCAGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCC
AAACCGCCGTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAG
CAAACTGCGCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACC
GCACTCCTTTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCG
CCGATGGCATTCCTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAA
ATA
BO18310.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4454-PB | 960 | Borr-RB | 1..737 | 17..753 | 3685 | 100 | Plus |
CG4454-PA | 948 | Borr-RA | 351..725 | 379..753 | 1875 | 100 | Plus |
CG4454-PA | 948 | Borr-RA | 1..352 | 17..368 | 1760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RB | 1298 | CG4454-RB | 133..869 | 17..753 | 3685 | 100 | Plus |
borr-RA | 1286 | CG4454-RA | 133..857 | 17..753 | 3495 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251966..9252352 | 753..367 | 1935 | 100 | Minus |
2L | 23513712 | 2L | 9252634..9252986 | 369..17 | 1765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:07:23 has no hits.
BO18310.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:15 Download gff for
BO18310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4454-PB | 1..736 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:47 Download gff for
BO18310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 133..868 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:10 Download gff for
BO18310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 133..868 | 17..752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:10 Download gff for
BO18310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251967..9252350 | 369..752 | 100 | <- | Minus |
2L | 9252635..9252986 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:47 Download gff for
BO18310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251967..9252350 | 369..752 | 100 | <- | Minus |
arm_2L | 9252635..9252986 | 17..368 | 100 | | Minus |
BO18310.complete Sequence
991 bp assembled on 2006-10-11
GenBank Submission: FJ634378
> BO18310.complete
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCC
AGCGGTGGGAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCAC
GAAGGCCATGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAG
CGCGGCGCAGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCC
AAACCGCCGTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAG
CAAACTGCGCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACC
GCACTCCTTTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCG
CCGATGGCATTCCTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAA
ATACGGCAGTCCCATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATG
TGAACATACCCATTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTG
GATGCCGACGAGGTGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACAC
CCTTAACCAGATCAAAACGCTGCACGAGAACTTGCAGATGATTGTTAATA
AGGCCAGCCAGGCGGTGTTCAAGGCAAGCTTTCTAGACCAT
BO18310.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RB | 960 | CG4454-PB | 1..957 | 17..973 | 4785 | 100 | Plus |
borr-RA | 948 | CG4454-PA | 1..945 | 17..973 | 4570 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RB | 1298 | CG4454-RB | 133..1089 | 17..973 | 4785 | 100 | Plus |
borr-RA | 1286 | CG4454-RA | 133..1077 | 17..973 | 4570 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252352 | 777..367 | 2055 | 100 | Minus |
2L | 23513712 | 2L | 9252634..9252986 | 369..17 | 1765 | 100 | Minus |
2L | 23513712 | 2L | 9251681..9251876 | 973..778 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:44:01 has no hits.
BO18310.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:50 Download gff for
BO18310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-RB | 1..960 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:50 Download gff for
BO18310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 131..1095 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:17 Download gff for
BO18310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 133..1089 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:50 Download gff for
BO18310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-RB | 131..1095 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:37 Download gff for
BO18310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RB | 133..1089 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:37 Download gff for
BO18310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251677..9251876 | 778..975 | 99 | <- | Minus |
2L | 9251942..9252350 | 369..777 | 100 | <- | Minus |
2L | 9252635..9252986 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:17 Download gff for
BO18310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9252635..9252986 | 17..368 | 100 | | Minus |
arm_2L | 9251677..9251876 | 778..975 | 99 | <- | Minus |
arm_2L | 9251942..9252350 | 369..777 | 100 | <- | Minus |
BO18310.pep Sequence
Translation from 16 to 991
> BO18310.pep
MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH
QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG
SAIEGHAPSATGSRNDEGYLTEDSSIGASGGSILAAHTGSLLRSTKAMRT
PGPLHSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTP
MASRAKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPM
VAQVMPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIK
TLHENLQMIVNKASQAVFKASFLDH
BO18310.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-PB | 319 | CG4454-PB | 1..319 | 1..319 | 1586 | 100 | Plus |
borr-PA | 315 | CG4454-PA | 1..315 | 1..319 | 1549 | 98.7 | Plus |
aust-PB | 216 | CG17009-PB | 88..210 | 179..315 | 236 | 41.4 | Plus |
aust-PA | 216 | CG17009-PA | 88..210 | 179..315 | 236 | 41.4 | Plus |
aust-PB | 216 | CG17009-PB | 1..98 | 1..99 | 178 | 41 | Plus |
aust-PA | 216 | CG17009-PA | 1..98 | 1..99 | 178 | 41 | Plus |