Clone BO18310 Report

Search the DGRC for BO18310

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptborr-RB
Protein status:BO18310.pep: validated full length
Sequenced Size:991

Clone Sequence Records

BO18310.3prime Sequence

733 bp (707 high quality bases) assembled on 2006-10-13

> BO18310.3prime
ATGGTCTAGAAAGCTTGCCTTGAACACCGCCTGGCTGGCCTTATTAACAA
TCATCTGCAAGTTCTCGTGCAGCGTTTTGATCTGGTTAAGGGTGTCCTCG
TCCAGGTTCTCCAACAGATTTGACTCCACCTCGTCGGCATCCAGTTTTTT
GGGCCGCAAGCTAAGAACTCCGTTCCGAATGGGTATGTTCACATTGGCGA
ACTTGTCTGGCATTACTTGAGCCACCATGGGACTGCCGTATTTGGATAGT
GCCACCTCGCCGGGCTTGGGATAGCGCAGGAATGCCATCGGCGGTGTAGT
TGGCGATCCGGAGCGCATTTGCTTCTGTTTCAAAGGAGTGCGGTCGGCAC
TGAAGGCCTTCGCACGCGAGGCCATCGGTGTGCGCAGTTTGCTGCGCGAA
TTGCGGCTGCTGCTGCTGCTGCTCGAAATTGACGGCGGTTTGGCCGAGTG
CAATATGTTGAGATCCCCGCAGGCGGAACGACTGCGCCGCGCTCGACGAG
CCCTCGCCGAGTGCAGTGGTCCGGGTGTGCGCATGGCCTTCGTGGACCGC
AGCAGGGAGCCTGTGTGGGCGGCCAGGATGCTCCCACCGCTGGCACCGAT
GCTGCTGTCCTCTGTAAGGTAGCCTTCGTCATTGCGACTTCCAGTGGCGG
AGGGGGCGTGGCCCTCGATGGCGCTGCCACTCATGGACATCGAGGCGAGC
AGCTGCGTCTGATCGCTGGCCTTGAAATCGCTG

BO18310.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4454-PB 960 Borr-RB 243..957 733..19 3550 99.8 Minus
CG4454-PA 948 Borr-RA 351..945 613..19 2975 100 Minus
CG4454-PA 948 Borr-RA 243..352 733..624 525 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RB 1298 CG4454-RB 375..1089 733..19 3560 99.9 Minus
borr-RA 1286 CG4454-RA 375..1077 733..19 3370 98.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252352 215..625 2055 100 Plus
2L 23513712 2L 9251681..9251876 19..214 980 100 Plus
2L 23513712 2L 9252634..9252744 623..733 540 99.1 Plus
Blast to na_te.dros performed on 2015-02-08 11:54:35 has no hits.

BO18310.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:15 Download gff for BO18310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4454-PB 243..960 18..733 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:59 Download gff for BO18310.3prime
Subject Subject Range Query Range Percent Splice Strand
borr-RB 375..1097 9..733 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:03 Download gff for BO18310.3prime
Subject Subject Range Query Range Percent Splice Strand
borr-RB 375..1097 9..733 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:03 Download gff for BO18310.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9251673..9251876 9..214 98 <- Plus
2L 9251942..9252350 215..623 100 <- Plus
2L 9252635..9252744 624..733 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:59 Download gff for BO18310.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251673..9251876 9..214 98 <- Plus
arm_2L 9251942..9252350 215..623 100 <- Plus
arm_2L 9252635..9252744 624..733 99   Plus

BO18310.5prime Sequence

753 bp (709 high quality bases) assembled on 2006-10-13

> BO18310.5prime
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCC
AGCGGTGGGAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCAC
GAAGGCCATGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAG
CGCGGCGCAGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCC
AAACCGCCGTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAG
CAAACTGCGCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACC
GCACTCCTTTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCG
CCGATGGCATTCCTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAA
ATA

BO18310.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4454-PB 960 Borr-RB 1..737 17..753 3685 100 Plus
CG4454-PA 948 Borr-RA 351..725 379..753 1875 100 Plus
CG4454-PA 948 Borr-RA 1..352 17..368 1760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RB 1298 CG4454-RB 133..869 17..753 3685 100 Plus
borr-RA 1286 CG4454-RA 133..857 17..753 3495 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251966..9252352 753..367 1935 100 Minus
2L 23513712 2L 9252634..9252986 369..17 1765 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:07:23 has no hits.

BO18310.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:15 Download gff for BO18310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4454-PB 1..736 17..752 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:47 Download gff for BO18310.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RB 133..868 17..752 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:10 Download gff for BO18310.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RB 133..868 17..752 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:10 Download gff for BO18310.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9251967..9252350 369..752 100 <- Minus
2L 9252635..9252986 17..368 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:47 Download gff for BO18310.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251967..9252350 369..752 100 <- Minus
arm_2L 9252635..9252986 17..368 100   Minus

BO18310.complete Sequence

991 bp assembled on 2006-10-11

GenBank Submission: FJ634378

> BO18310.complete
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCC
AGCGGTGGGAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCAC
GAAGGCCATGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAG
CGCGGCGCAGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCC
AAACCGCCGTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAG
CAAACTGCGCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACC
GCACTCCTTTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCG
CCGATGGCATTCCTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAA
ATACGGCAGTCCCATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATG
TGAACATACCCATTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTG
GATGCCGACGAGGTGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACAC
CCTTAACCAGATCAAAACGCTGCACGAGAACTTGCAGATGATTGTTAATA
AGGCCAGCCAGGCGGTGTTCAAGGCAAGCTTTCTAGACCAT

BO18310.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RB 960 CG4454-PB 1..957 17..973 4785 100 Plus
borr-RA 948 CG4454-PA 1..945 17..973 4570 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RB 1298 CG4454-RB 133..1089 17..973 4785 100 Plus
borr-RA 1286 CG4454-RA 133..1077 17..973 4570 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252352 777..367 2055 100 Minus
2L 23513712 2L 9252634..9252986 369..17 1765 100 Minus
2L 23513712 2L 9251681..9251876 973..778 980 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:44:01 has no hits.

BO18310.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:50 Download gff for BO18310.complete
Subject Subject Range Query Range Percent Splice Strand
Borr-RB 1..960 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:50 Download gff for BO18310.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RB 131..1095 17..983 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:17 Download gff for BO18310.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RB 133..1089 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:50 Download gff for BO18310.complete
Subject Subject Range Query Range Percent Splice Strand
Borr-RB 131..1095 17..983 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:37 Download gff for BO18310.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RB 133..1089 17..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:37 Download gff for BO18310.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9251677..9251876 778..975 99 <- Minus
2L 9251942..9252350 369..777 100 <- Minus
2L 9252635..9252986 17..368 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:17 Download gff for BO18310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9252635..9252986 17..368 100   Minus
arm_2L 9251677..9251876 778..975 99 <- Minus
arm_2L 9251942..9252350 369..777 100 <- Minus

BO18310.pep Sequence

Translation from 16 to 991

> BO18310.pep
MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH
QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG
SAIEGHAPSATGSRNDEGYLTEDSSIGASGGSILAAHTGSLLRSTKAMRT
PGPLHSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTP
MASRAKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPM
VAQVMPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIK
TLHENLQMIVNKASQAVFKASFLDH

BO18310.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
borr-PB 319 CG4454-PB 1..319 1..319 1586 100 Plus
borr-PA 315 CG4454-PA 1..315 1..319 1549 98.7 Plus
aust-PB 216 CG17009-PB 88..210 179..315 236 41.4 Plus
aust-PA 216 CG17009-PA 88..210 179..315 236 41.4 Plus
aust-PB 216 CG17009-PB 1..98 1..99 178 41 Plus
aust-PA 216 CG17009-PA 1..98 1..99 178 41 Plus