Clone Sequence Records
BO18317.5prime Sequence
759 bp (698 high quality bases) assembled on 2006-10-13
> BO18317.5prime
GAAGTTATCAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCA
GCGATGTCCGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTG
CTCAAGCGGGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCAT
TCCAGCCACGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCG
TCATCGACATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATA
GTAAAGACCATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATAC
CCTCAACATTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTA
ATTTGGAACAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCA
AAGTGCCACCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGA
GGATTTGCAAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCG
ACATGGCCCACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCA
GCAGGTGCCGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCA
GAGGATTTACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGA
GGCTCCAGAGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCAC
GAACAGTATCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTT
AAACAACAA
BO18317.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-PA | 1251 | CG31102-RA | 1..743 | 17..759 | 3665 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-RA | 1744 | CG31102-RA | 293..1036 | 16..759 | 3690 | 99.7 | Plus |
CG31102-RB | 1756 | CG31102-RB | 293..1048 | 16..759 | 3560 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25294348..25294837 | 709..220 | 2435 | 99.8 | Minus |
3R | 32079331 | 3R | 25295097..25295302 | 221..16 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 25294222..25294271 | 759..710 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:22:36 has no hits.
BO18317.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:20 Download gff for
BO18317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-PA | 1..741 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:55 Download gff for
BO18317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 287..1034 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:08 Download gff for
BO18317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 287..1034 | 9..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:08 Download gff for
BO18317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25295097..25295308 | 9..221 | 99 | | Minus |
3R | 25294224..25294271 | 710..757 | 97 | <- | Minus |
3R | 25294348..25294835 | 222..709 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:55 Download gff for
BO18317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21119946..21119993 | 710..757 | 97 | <- | Minus |
arm_3R | 21120070..21120557 | 222..709 | 99 | <- | Minus |
arm_3R | 21120819..21121030 | 9..221 | 99 | | Minus |
BO18317.complete Sequence
1282 bp assembled on 2008-08-14
GenBank Submission: FJ634379
> BO18317.complete
GAAGTTATCAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCA
GCGATGTCCGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTG
CTCAAGCGGGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCAT
TCCAGCCACGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCG
TCATCGACATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATA
GTAAAGACCATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATAC
CCTCAACATTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTA
ATTTGGAACAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCA
AAGTGCCACCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGA
GGATTTGCAAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCG
ACATGGCCCACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCA
GCAGGTGCCGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCA
GAGGATTTACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGA
GGCTCCAGAGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCAC
GAACAGTATCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTT
TAACAACAATCCGCAGGAGTTTAAAGTTCTAAATCACGGTGATTTTTGGT
CCAGCAACATAATGCTAAGCTATACTCAAACTGGTGATATCAACCAGGTG
CGTTTCGTGGACTTCCAACTGTGCAAGTGGGGTAGTCCGGCTCAGGATCT
TTGGGAACTCATCATATGTTCGGCACGGCATAGTATACGAATACAATACT
TTGACTACTTCATCAGGATATACCACACACACCTAGTGCGCTGCCTAAAG
ATCCTAAAATACAGCGAACGAATACCAATGCTAAGGGAGCTGCATATGAG
CATGATCAAGTATGGATTTTGGGGCTACTTTACCACCTTCACGCACCTTG
TGTTCATTTTGCTGCCACCGGATACGGAAGCTAGCTTGGTGAAGCTTACG
CAGCCGGGAGAGGAAGGAGATCGCTTCCGGTCCAAGGTGTACACAAATCC
ACTCTACGTCCGCTCTGCGCTCAGCATATTCCCCTTTCTACTTCGGCGTG
GTATTCTAGACTTTGCAAGCTTTCTAGACCAT
BO18317.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-RA | 1251 | CG31102-PA | 1..1248 | 17..1264 | 6225 | 99.9 | Plus |
CG31102-RB | 1263 | CG31102-PB | 1..1260 | 17..1264 | 6070 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-RA | 1744 | CG31102-RA | 293..1541 | 16..1264 | 6230 | 99.9 | Plus |
CG31102-RB | 1756 | CG31102-RB | 293..1553 | 16..1264 | 6075 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25294348..25294837 | 709..220 | 2435 | 99.8 | Minus |
3R | 32079331 | 3R | 25293907..25294271 | 1074..710 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 25295097..25295302 | 221..16 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 25293661..25293852 | 1264..1073 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:22:34 has no hits.
BO18317.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:39 Download gff for
BO18317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 283..1551 | 9..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:23 Download gff for
BO18317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 294..1541 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:14 Download gff for
BO18317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 290..1537 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:45 Download gff for
BO18317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31102-RA | 294..1541 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:45 Download gff for
BO18317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25293658..25293851 | 1074..1266 | 98 | <- | Minus |
3R | 25293908..25294271 | 710..1073 | 100 | <- | Minus |
3R | 25294348..25294835 | 222..709 | 99 | <- | Minus |
3R | 25295097..25295301 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:23 Download gff for
BO18317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21119380..21119573 | 1074..1266 | 98 | <- | Minus |
arm_3R | 21119630..21119993 | 710..1073 | 100 | <- | Minus |
arm_3R | 21120070..21120557 | 222..709 | 99 | <- | Minus |
arm_3R | 21120819..21121023 | 17..221 | 100 | | Minus |
BO18317.pep Sequence
Translation from 16 to 1282
> BO18317.pep
MPDNSNKFSASSDVRIPAWINEAYFKRLLKREFREFRRILNLSIIPATPP
GETYTSLLMRIVIDIELKDGFSQQKSYIVKTMLDDAQGNGGFVNTLNIFP
KEKMMYETIIPNLEQLYEEAGLSVKFAPKCHHAEDIKGRICLVQEDLQTK
KYRNINRLKGFDMAHMHRVLEKLAEFHAAGAVWRQRKGPFPDDFQRIYLP
ANYQKSKSYQARLQSYKTAIASWGLADHEQYPTADQFVQSYASCFNNNPQ
EFKVLNHGDFWSSNIMLSYTQTGDINQVRFVDFQLCKWGSPAQDLWELII
CSARHSIRIQYFDYFIRIYHTHLVRCLKILKYSERIPMLRELHMSMIKYG
FWGYFTTFTHLVFILLPPDTEASLVKLTQPGEEGDRFRSKVYTNPLYVRS
ALSIFPFLLRRGILDFASFLDH
BO18317.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31102-PA | 416 | CG31102-PA | 1..416 | 1..416 | 2211 | 100 | Plus |
CG31102-PB | 420 | CG31102-PB | 1..420 | 1..416 | 2196 | 99 | Plus |
CG31288-PA | 428 | CG31288-PA | 1..426 | 1..419 | 904 | 40.3 | Plus |
CG10550-PD | 425 | CG10550-PD | 3..422 | 2..414 | 863 | 41.3 | Plus |
CG10550-PC | 425 | CG10550-PC | 3..422 | 2..414 | 863 | 41.3 | Plus |