Clone BO18317 Report

Search the DGRC for BO18317

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG31102-RA
Protein status:BO18317.pep: Imported from assembly
Sequenced Size:1282

Clone Sequence Records

BO18317.5prime Sequence

759 bp (698 high quality bases) assembled on 2006-10-13

> BO18317.5prime
GAAGTTATCAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCA
GCGATGTCCGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTG
CTCAAGCGGGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCAT
TCCAGCCACGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCG
TCATCGACATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATA
GTAAAGACCATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATAC
CCTCAACATTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTA
ATTTGGAACAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCA
AAGTGCCACCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGA
GGATTTGCAAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCG
ACATGGCCCACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCA
GCAGGTGCCGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCA
GAGGATTTACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGA
GGCTCCAGAGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCAC
GAACAGTATCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTT
AAACAACAA

BO18317.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-PA 1251 CG31102-RA 1..743 17..759 3665 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-RA 1744 CG31102-RA 293..1036 16..759 3690 99.7 Plus
CG31102-RB 1756 CG31102-RB 293..1048 16..759 3560 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25294348..25294837 709..220 2435 99.8 Minus
3R 32079331 3R 25295097..25295302 221..16 1030 100 Minus
3R 32079331 3R 25294222..25294271 759..710 235 98 Minus
Blast to na_te.dros performed on 2015-02-13 07:22:36 has no hits.

BO18317.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:20 Download gff for BO18317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31102-PA 1..741 17..757 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:55 Download gff for BO18317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 287..1034 9..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:08 Download gff for BO18317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 287..1034 9..757 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:08 Download gff for BO18317.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25295097..25295308 9..221 99   Minus
3R 25294224..25294271 710..757 97 <- Minus
3R 25294348..25294835 222..709 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:55 Download gff for BO18317.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21119946..21119993 710..757 97 <- Minus
arm_3R 21120070..21120557 222..709 99 <- Minus
arm_3R 21120819..21121030 9..221 99   Minus

BO18317.complete Sequence

1282 bp assembled on 2008-08-14

GenBank Submission: FJ634379

> BO18317.complete
GAAGTTATCAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCA
GCGATGTCCGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTG
CTCAAGCGGGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCAT
TCCAGCCACGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCG
TCATCGACATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATA
GTAAAGACCATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATAC
CCTCAACATTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTA
ATTTGGAACAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCA
AAGTGCCACCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGA
GGATTTGCAAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCG
ACATGGCCCACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCA
GCAGGTGCCGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCA
GAGGATTTACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGA
GGCTCCAGAGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCAC
GAACAGTATCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTT
TAACAACAATCCGCAGGAGTTTAAAGTTCTAAATCACGGTGATTTTTGGT
CCAGCAACATAATGCTAAGCTATACTCAAACTGGTGATATCAACCAGGTG
CGTTTCGTGGACTTCCAACTGTGCAAGTGGGGTAGTCCGGCTCAGGATCT
TTGGGAACTCATCATATGTTCGGCACGGCATAGTATACGAATACAATACT
TTGACTACTTCATCAGGATATACCACACACACCTAGTGCGCTGCCTAAAG
ATCCTAAAATACAGCGAACGAATACCAATGCTAAGGGAGCTGCATATGAG
CATGATCAAGTATGGATTTTGGGGCTACTTTACCACCTTCACGCACCTTG
TGTTCATTTTGCTGCCACCGGATACGGAAGCTAGCTTGGTGAAGCTTACG
CAGCCGGGAGAGGAAGGAGATCGCTTCCGGTCCAAGGTGTACACAAATCC
ACTCTACGTCCGCTCTGCGCTCAGCATATTCCCCTTTCTACTTCGGCGTG
GTATTCTAGACTTTGCAAGCTTTCTAGACCAT

BO18317.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-RA 1251 CG31102-PA 1..1248 17..1264 6225 99.9 Plus
CG31102-RB 1263 CG31102-PB 1..1260 17..1264 6070 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-RA 1744 CG31102-RA 293..1541 16..1264 6230 99.9 Plus
CG31102-RB 1756 CG31102-RB 293..1553 16..1264 6075 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25294348..25294837 709..220 2435 99.8 Minus
3R 32079331 3R 25293907..25294271 1074..710 1825 100 Minus
3R 32079331 3R 25295097..25295302 221..16 1030 100 Minus
3R 32079331 3R 25293661..25293852 1264..1073 960 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:22:34 has no hits.

BO18317.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:39 Download gff for BO18317.complete
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 283..1551 9..1277 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:23 Download gff for BO18317.complete
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 294..1541 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:14 Download gff for BO18317.complete
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 290..1537 17..1266 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:45 Download gff for BO18317.complete
Subject Subject Range Query Range Percent Splice Strand
CG31102-RA 294..1541 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:45 Download gff for BO18317.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25293658..25293851 1074..1266 98 <- Minus
3R 25293908..25294271 710..1073 100 <- Minus
3R 25294348..25294835 222..709 99 <- Minus
3R 25295097..25295301 17..221 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:23 Download gff for BO18317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21119380..21119573 1074..1266 98 <- Minus
arm_3R 21119630..21119993 710..1073 100 <- Minus
arm_3R 21120070..21120557 222..709 99 <- Minus
arm_3R 21120819..21121023 17..221 100   Minus

BO18317.pep Sequence

Translation from 16 to 1282

> BO18317.pep
MPDNSNKFSASSDVRIPAWINEAYFKRLLKREFREFRRILNLSIIPATPP
GETYTSLLMRIVIDIELKDGFSQQKSYIVKTMLDDAQGNGGFVNTLNIFP
KEKMMYETIIPNLEQLYEEAGLSVKFAPKCHHAEDIKGRICLVQEDLQTK
KYRNINRLKGFDMAHMHRVLEKLAEFHAAGAVWRQRKGPFPDDFQRIYLP
ANYQKSKSYQARLQSYKTAIASWGLADHEQYPTADQFVQSYASCFNNNPQ
EFKVLNHGDFWSSNIMLSYTQTGDINQVRFVDFQLCKWGSPAQDLWELII
CSARHSIRIQYFDYFIRIYHTHLVRCLKILKYSERIPMLRELHMSMIKYG
FWGYFTTFTHLVFILLPPDTEASLVKLTQPGEEGDRFRSKVYTNPLYVRS
ALSIFPFLLRRGILDFASFLDH

BO18317.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31102-PA 416 CG31102-PA 1..416 1..416 2211 100 Plus
CG31102-PB 420 CG31102-PB 1..420 1..416 2196 99 Plus
CG31288-PA 428 CG31288-PA 1..426 1..419 904 40.3 Plus
CG10550-PD 425 CG10550-PD 3..422 2..414 863 41.3 Plus
CG10550-PC 425 CG10550-PC 3..422 2..414 863 41.3 Plus