Clone Sequence Records
BO18324.5prime Sequence
344 bp (344 high quality bases) assembled on 2006-10-13
> BO18324.5prime
GAAGTTATCAGTCGACATGAAATTCCTCATCGTCTTCGTCGCCCTCTTCG
CCATGGCAGTGGCCCGCCCCAACCTTGCCGAGATCGTGAGGCAGGTCTCC
GATGTTGAGCCCGAGAAGTGGAGCTCCGACGTGGAGACCAGCGATGGCAC
CAGCATCAAACAGGAGGGTGTCCTCAAGAACGCTGGCACTGACAACGAGG
CCGCTGTCGTCCACGGATCCTTCACCTGGGTGGATGAGAAGACCGGCGAG
AAGTTCACCATCACATACGTGGCTGATGAGAACGGATACCAGCCCCAGGG
CGCCCATCTGCCCGTGGCACCAGTTGCTGCAAGCTTTCTAGACC
BO18324.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32400-PA | 315 | Lcp65Ab1-RA | 1..312 | 17..328 | 1560 | 100 | Plus |
CG18773-PA | 315 | Lcp65Ab2-RA | 1..312 | 17..328 | 1560 | 100 | Plus |
CG10533-PA | 303 | Lcp65Af-RA | 250..287 | 278..315 | 165 | 97.3 | Plus |
CG18777-PA | 309 | CG18777-RA | 244..293 | 266..315 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ab1-RA | 413 | CG32400-RA | 44..357 | 15..328 | 1570 | 100 | Plus |
Lcp65Ab2-RA | 416 | CG18773-RA | 47..360 | 15..328 | 1570 | 100 | Plus |
Cpr65Ax1-RA | 389 | CG34270-RA | 282..353 | 256..327 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6146720..6147033 | 15..328 | 1570 | 100 | Plus |
3L | 28110227 | 3L | 6149591..6149904 | 15..328 | 1570 | 100 | Plus |
3L | 28110227 | 3L | 6147567..6147638 | 327..256 | 225 | 87.5 | Minus |
3L | 28110227 | 3L | 6150438..6150509 | 327..256 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:50:14 has no hits.
BO18324.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:23 Download gff for
BO18324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18773-PA | 1..315 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:52 Download gff for
BO18324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ab1-RA | 36..361 | 9..333 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:35 Download gff for
BO18324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ab2-RA | 39..364 | 9..333 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:35 Download gff for
BO18324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6146712..6147037 | 9..333 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:52 Download gff for
BO18324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6139812..6140137 | 9..333 | 98 | | Plus |
BO18324.complete Sequence
346 bp assembled on 2006-10-11
GenBank Submission: FJ634380
> BO18324.complete
GAAGTTATCAGTCGACATGAAATTCCTCATCGTCTTCGTCGCCCTCTTCG
CCATGGCAGTGGCCCGCCCCAACCTTGCCGAGATCGTGAGGCAGGTCTCC
GATGTTGAGCCCGAGAAGTGGAGCTCCGACGTGGAGACCAGCGATGGCAC
CAGCATCAAACAGGAGGGTGTCCTCAAGAACGCTGGCACTGACAACGAGG
CCGCTGTCGTCCACGGATCCTTCACCTGGGTGGATGAGAAGACCGGCGAG
AAGTTCACCATCACATACGTGGCTGATGAGAACGGATACCAGCCCCAGGG
CGCCCATCTGCCCGTGGCACCAGTTGCTGCAAGCTTTCTAGACCAT
BO18324.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ab1-RA | 315 | CG32400-PA | 1..312 | 17..328 | 1560 | 100 | Plus |
Lcp65Ab2-RA | 315 | CG18773-PA | 1..312 | 17..328 | 1560 | 100 | Plus |
Cpr65Ax1-RA | 309 | CG34270-PA | 234..305 | 256..327 | 225 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ab1-RA | 413 | CG32400-RA | 44..357 | 15..328 | 1570 | 100 | Plus |
Lcp65Ab2-RA | 416 | CG18773-RA | 47..360 | 15..328 | 1570 | 100 | Plus |
Cpr65Ax1-RA | 389 | CG34270-RA | 282..353 | 256..327 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6146720..6147033 | 15..328 | 1570 | 100 | Plus |
3L | 28110227 | 3L | 6149591..6149904 | 15..328 | 1570 | 100 | Plus |
3L | 28110227 | 3L | 6147567..6147638 | 327..256 | 225 | 87.5 | Minus |
3L | 28110227 | 3L | 6150438..6150509 | 327..256 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:37:32 has no hits.
BO18324.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:35 Download gff for
BO18324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ab1-RA | 1..315 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:40 Download gff for
BO18324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ab2-RA | 42..367 | 9..333 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:50 Download gff for
BO18324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ab1-RA | 46..357 | 17..330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:35 Download gff for
BO18324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ab2-RA | 42..367 | 9..333 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:06 Download gff for
BO18324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ab2-RA | 49..360 | 17..330 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:06 Download gff for
BO18324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6146722..6147033 | 17..330 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:50 Download gff for
BO18324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6139822..6140133 | 17..330 | 99 | | Plus |
BO18324.pep Sequence
Translation from 16 to 346
> BO18324.pep
MKFLIVFVALFAMAVARPNLAEIVRQVSDVEPEKWSSDVETSDGTSIKQE
GVLKNAGTDNEAAVVHGSFTWVDEKTGEKFTITYVADENGYQPQGAHLPV
APVAASFLDH
BO18324.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ab1-PA | 104 | CG32400-PA | 1..104 | 1..104 | 533 | 100 | Plus |
Lcp65Ab2-PA | 104 | CG18773-PA | 1..104 | 1..104 | 533 | 100 | Plus |
Cpr65Ax1-PA | 102 | CG34270-PA | 1..102 | 1..104 | 301 | 61.5 | Plus |
Cpr65Ax2-PB | 102 | CG18777-PB | 1..102 | 1..104 | 301 | 61.5 | Plus |
Cpr65Ax2-PA | 102 | CG18777-PA | 1..102 | 1..104 | 301 | 61.5 | Plus |