Clone Sequence Records
BO18329.5prime Sequence
476 bp (476 high quality bases) assembled on 2006-10-13
> BO18329.5prime
GAAGTTATCAGTCGACATGAGTTTTCATTTTGCTGTACTGACCCTTATTT
TAACAGCCTTCACAGTTTCTCTGTGTGCTGAACAAAAAATTACAAAGAGT
GACGCAGGTGAAATACGAATTTTCAAACGTCTTATTCCTGCCGATGTTCT
ACGAGATTTTCCGGGAATGTGCTTTGCTTCAACTCGATGTGCCACTGTTG
AGCCTGGAAAGTCGTGGGACCTTACTCCATTCTGCGGTCGATCTACTTGT
GTTCAAAATGAGGAAAATGATGCAAAGCTATTCGAACTCGTAAAAGACTG
CGGCCCATTGCCACTGGCGAATGACAAATGTAAATTGGACACAGAGAAGA
CTAATAAAACCGCATCGTTTCCTTATTGCTGCCCCATCTTTACATGTGAC
CCCGGTGTTAAATTGGAATACCCCGAGATCGGAAAGGATAATGACAAAAA
GAATTCTGAGGCAAGCTTTCTAGACC
BO18329.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31997-PA | 447 | CG31997-RA | 1..444 | 17..460 | 2195 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31997-RB | 729 | CG31997-RB | 158..601 | 17..460 | 2205 | 99.8 | Plus |
CG31997-RA | 666 | CG31997-RA | 158..601 | 17..460 | 2205 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 154782..154965 | 460..277 | 905 | 99.5 | Minus |
4 | 1348131 | 4 | 155765..155903 | 155..17 | 695 | 100 | Minus |
4 | 1348131 | 4 | 155026..155149 | 277..154 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:10:42 has no hits.
BO18329.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:28 Download gff for
BO18329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31997-PA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:28 Download gff for
BO18329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31997-RA | 158..601 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:56 Download gff for
BO18329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31997-RA | 158..601 | 17..460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:56 Download gff for
BO18329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 154780..154965 | 277..461 | 98 | <- | Minus |
4 | 155027..155147 | 156..276 | 100 | <- | Minus |
4 | 155765..155903 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:28 Download gff for
BO18329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 175406..175591 | 277..461 | 98 | <- | Minus |
arm_4 | 175653..175773 | 156..276 | 100 | <- | Minus |
arm_4 | 176391..176529 | 17..155 | 100 | | Minus |
BO18329.complete Sequence
478 bp assembled on 2007-10-31
GenBank Submission: FJ634381
> BO18329.complete
GAAGTTATCAGTCGACATGAGTTTTCATTTTGCTGTACTGACCCTTATTT
TAACAGCCTTCACAGTTTCTCTGTGTGCTGAACAAAAAATTACAAAGAGT
GACGCAGGTGAAATACGAATTTTCAAACGTCTTATTCCTGCCGATGTTCT
ACGAGATTTTCCGGGAATGTGCTTTGCTTCAACTCGATGTGCCACTGTTG
AGCCTGGAAAGTCGTGGGACCTTACTCCATTCTGCGGTCGATCTACTTGT
GTTCAAAATGAGGAAAATGATGCAAAGCTATTCGAACTCGTAGAAGACTG
CGGCCCATTGCCACTGGCGAATGACAAATGTAAATTGGACACAGAGAAGA
CTAATAAAACCGCATCGTTTCCTTATTGCTGCCCCATCTTTACATGTGAC
CCCGGTGTTAAATTGGAATACCCCGAGATCGGAAAGGATAATGACAAAAA
GAATTCTGAGGCAAGCTTTCTAGACCAT
BO18329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31997-RB | 447 | CG31997-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
CG31997-RA | 447 | CG31997-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31997-RB | 729 | CG31997-RB | 158..601 | 17..460 | 2220 | 100 | Plus |
CG31997-RA | 666 | CG31997-RA | 158..601 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 154782..154965 | 460..277 | 920 | 100 | Minus |
4 | 1348131 | 4 | 155765..155903 | 155..17 | 695 | 100 | Minus |
4 | 1348131 | 4 | 155026..155149 | 277..154 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:04:03 has no hits.
BO18329.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:44 Download gff for
BO18329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31997-RA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:33 Download gff for
BO18329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31997-RA | 150..593 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:02 Download gff for
BO18329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31997-RA | 158..601 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:44 Download gff for
BO18329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31997-RA | 150..593 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:43 Download gff for
BO18329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31997-RA | 158..601 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:43 Download gff for
BO18329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 154779..154965 | 277..462 | 98 | <- | Minus |
4 | 155027..155147 | 156..276 | 100 | <- | Minus |
4 | 155765..155903 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:02 Download gff for
BO18329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 175405..175591 | 277..462 | 98 | <- | Minus |
arm_4 | 175653..175773 | 156..276 | 100 | <- | Minus |
arm_4 | 176391..176529 | 17..155 | 100 | | Minus |
BO18329.pep Sequence
Translation from 16 to 478
> BO18329.pep
MSFHFAVLTLILTAFTVSLCAEQKITKSDAGEIRIFKRLIPADVLRDFPG
MCFASTRCATVEPGKSWDLTPFCGRSTCVQNEENDAKLFELVEDCGPLPL
ANDKCKLDTEKTNKTASFPYCCPIFTCDPGVKLEYPEIGKDNDKKNSEAS
FLDH
BO18329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31997-PB | 148 | CG31997-PB | 1..148 | 1..148 | 802 | 100 | Plus |
CG31997-PA | 148 | CG31997-PA | 1..148 | 1..148 | 802 | 100 | Plus |