Clone BO18329 Report

Search the DGRC for BO18329

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG31997-RA
Protein status:BO18329.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO18329.5prime Sequence

476 bp (476 high quality bases) assembled on 2006-10-13

> BO18329.5prime
GAAGTTATCAGTCGACATGAGTTTTCATTTTGCTGTACTGACCCTTATTT
TAACAGCCTTCACAGTTTCTCTGTGTGCTGAACAAAAAATTACAAAGAGT
GACGCAGGTGAAATACGAATTTTCAAACGTCTTATTCCTGCCGATGTTCT
ACGAGATTTTCCGGGAATGTGCTTTGCTTCAACTCGATGTGCCACTGTTG
AGCCTGGAAAGTCGTGGGACCTTACTCCATTCTGCGGTCGATCTACTTGT
GTTCAAAATGAGGAAAATGATGCAAAGCTATTCGAACTCGTAAAAGACTG
CGGCCCATTGCCACTGGCGAATGACAAATGTAAATTGGACACAGAGAAGA
CTAATAAAACCGCATCGTTTCCTTATTGCTGCCCCATCTTTACATGTGAC
CCCGGTGTTAAATTGGAATACCCCGAGATCGGAAAGGATAATGACAAAAA
GAATTCTGAGGCAAGCTTTCTAGACC

BO18329.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31997-PA 447 CG31997-RA 1..444 17..460 2195 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31997-RB 729 CG31997-RB 158..601 17..460 2205 99.8 Plus
CG31997-RA 666 CG31997-RA 158..601 17..460 2205 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 154782..154965 460..277 905 99.5 Minus
4 1348131 4 155765..155903 155..17 695 100 Minus
4 1348131 4 155026..155149 277..154 620 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:10:42 has no hits.

BO18329.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:28 Download gff for BO18329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31997-PA 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:28 Download gff for BO18329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31997-RA 158..601 17..460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:56 Download gff for BO18329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31997-RA 158..601 17..460 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:56 Download gff for BO18329.5prime
Subject Subject Range Query Range Percent Splice Strand
4 154780..154965 277..461 98 <- Minus
4 155027..155147 156..276 100 <- Minus
4 155765..155903 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:28 Download gff for BO18329.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 175406..175591 277..461 98 <- Minus
arm_4 175653..175773 156..276 100 <- Minus
arm_4 176391..176529 17..155 100   Minus

BO18329.complete Sequence

478 bp assembled on 2007-10-31

GenBank Submission: FJ634381

> BO18329.complete
GAAGTTATCAGTCGACATGAGTTTTCATTTTGCTGTACTGACCCTTATTT
TAACAGCCTTCACAGTTTCTCTGTGTGCTGAACAAAAAATTACAAAGAGT
GACGCAGGTGAAATACGAATTTTCAAACGTCTTATTCCTGCCGATGTTCT
ACGAGATTTTCCGGGAATGTGCTTTGCTTCAACTCGATGTGCCACTGTTG
AGCCTGGAAAGTCGTGGGACCTTACTCCATTCTGCGGTCGATCTACTTGT
GTTCAAAATGAGGAAAATGATGCAAAGCTATTCGAACTCGTAGAAGACTG
CGGCCCATTGCCACTGGCGAATGACAAATGTAAATTGGACACAGAGAAGA
CTAATAAAACCGCATCGTTTCCTTATTGCTGCCCCATCTTTACATGTGAC
CCCGGTGTTAAATTGGAATACCCCGAGATCGGAAAGGATAATGACAAAAA
GAATTCTGAGGCAAGCTTTCTAGACCAT

BO18329.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31997-RB 447 CG31997-PB 1..444 17..460 2220 100 Plus
CG31997-RA 447 CG31997-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31997-RB 729 CG31997-RB 158..601 17..460 2220 100 Plus
CG31997-RA 666 CG31997-RA 158..601 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 154782..154965 460..277 920 100 Minus
4 1348131 4 155765..155903 155..17 695 100 Minus
4 1348131 4 155026..155149 277..154 620 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:04:03 has no hits.

BO18329.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:44 Download gff for BO18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG31997-RA 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:33 Download gff for BO18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG31997-RA 150..593 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:02 Download gff for BO18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG31997-RA 158..601 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:44 Download gff for BO18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG31997-RA 150..593 17..460 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:43 Download gff for BO18329.complete
Subject Subject Range Query Range Percent Splice Strand
CG31997-RA 158..601 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:43 Download gff for BO18329.complete
Subject Subject Range Query Range Percent Splice Strand
4 154779..154965 277..462 98 <- Minus
4 155027..155147 156..276 100 <- Minus
4 155765..155903 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:02 Download gff for BO18329.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 175405..175591 277..462 98 <- Minus
arm_4 175653..175773 156..276 100 <- Minus
arm_4 176391..176529 17..155 100   Minus

BO18329.pep Sequence

Translation from 16 to 478

> BO18329.pep
MSFHFAVLTLILTAFTVSLCAEQKITKSDAGEIRIFKRLIPADVLRDFPG
MCFASTRCATVEPGKSWDLTPFCGRSTCVQNEENDAKLFELVEDCGPLPL
ANDKCKLDTEKTNKTASFPYCCPIFTCDPGVKLEYPEIGKDNDKKNSEAS
FLDH

BO18329.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31997-PB 148 CG31997-PB 1..148 1..148 802 100 Plus
CG31997-PA 148 CG31997-PA 1..148 1..148 802 100 Plus