Clone Sequence Records
BO18333.3prime Sequence
754 bp (720 high quality bases) assembled on 2006-10-13
> BO18333.3prime
ATGGTCTAGAAAGCTTGCGTGGTAACAGTGCCAGGCGGCCACCCGCTGAC
CTGGCGGGGATTCCCGGATGAGTCGCATCTGCTCGGAGCCCGTATCCCCC
GCCTGATCTCCGCCGACTATGACGGTGCCGAGCACCAGTTTCTTGCCCAT
CTTCTTGGTGGCCAATGTGATGCGCAGCACGATGTCCTCCAACTGATCGA
GTCTCTGGAGCGGTATATCTATCGTACCCTCACCGGATCCATCGTCCCAC
TTGGTGGACAGCGAGGGAAAGAAAATGGGGGACTTCCAGGCGTCTATGTA
GATGCCGTGCTCGAAGGCCGTGGTCTTCACATACACACCGGAGCTCGCCG
TGGCCTCCAGCTCATCCTTGACCTTATTGGAGCAACGCATCCGTGTGGTG
GTCACCCGGAGCAGGTATCTGCCGGAGTCGCTGTTGCCGGCATTGCTAAT
GCCCATTTTCCGCTTCACTTCGGCGGTCATCCGTTGCCAATTGTTGGTCG
CATGGGTGGCAAGTGGAGATGGAGGATCTGGTGTAGTGGGCGTGTTCGTG
GGCGTGGCAGGGGGCAGTGAAATATCCACAGGTGTCTCACATTCCAGGAG
ATCTCGCACCTCGAGAGCCAGTTCGACCACACCCTTGGTGGAGTTAACCA
AATTGTTGTTGCTGGGTGACGACTTGGCCACCGTCGTGGTGATATCTTTG
ATAGGCAGCCACAGCTCTTCCGTGGAATAGCACCCCGTGCGGGTGTTGCG
CTGG
BO18333.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10660-PA | 1464 | CG10660-RA | 726..1461 | 754..19 | 3655 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10660-RD | 2289 | CG10660-RD | 1407..2142 | 754..19 | 3665 | 99.9 | Minus |
| CG10660-RC | 2310 | CG10660-RC | 1428..2163 | 754..19 | 3665 | 99.9 | Minus |
| CG10660-RB | 1688 | CG10660-RB | 806..1541 | 754..19 | 3665 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12486815..12487447 | 19..651 | 3165 | 100 | Plus |
| 3L | 28110227 | 3L | 12488083..12488185 | 652..754 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:09:40 has no hits.
BO18333.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:31 Download gff for
BO18333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-PA | 726..1464 | 15..754 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:04:32 Download gff for
BO18333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RB | 806..1546 | 13..754 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:43 Download gff for
BO18333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RB | 806..1546 | 13..754 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:43 Download gff for
BO18333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12486810..12487447 | 13..651 | 99 | <- | Plus |
| 3L | 12488083..12488185 | 652..754 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:04:32 Download gff for
BO18333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12479910..12480547 | 13..651 | 99 | <- | Plus |
| arm_3L | 12481183..12481285 | 652..754 | 99 | | Plus |
BO18333.5prime Sequence
775 bp (770 high quality bases) assembled on 2006-10-13
> BO18333.5prime
GAAGTTATCAGTCGACATGAACAAACTACGGGCCCTGCTGCCCGGCCAAC
ATTCTGGCTCCAATGGAGCATCCCGGCACTCCGTAACTCTGGAGCCGGAG
ATCGGATTCCAGATCACCATTGACAATCCAAAAAACAACGATCAGAGCAA
GGGTTCCACGGCGGTGCCCGAACTGAATGTCCATCTCATCGCCGCGCGAC
ATTTGCCCTCTCTTTTCGGCTTCAAGATCGTCCAGGGGTATCTTATAAAG
GTGAAGCTTTTTCCCGGTTCGAAACGCTTGGACAGCAGCATTCAGACGAA
TACATGGCCAAAGTTCAATGAAAATTTCAAGTTTCCCCTGGTGCCGGATA
TCAAATCCTCTATGAAACATGTGGCTCGACGTCCCGCAAATGGACAGGTA
AGCAGCTCGGATCAGGAGCCGGAACAACTCTTTTCCGGGCAATTTTTGGT
CTTTACGGTCTACGCGCTACTGGAACTTCCGGCAACGAACTTCAATCGCT
TTAACAAGACATACCGCTCGCTAAAAGATAGAAGCACCAGCTTTGTGCAG
CGTTTCGTGGATCCAACTGCGAGTGCTCCAAGTGAGGCAAAGACTGAGGC
CGGCGGAAAGCCAAGTGACCAGGGAAAGGGCAGGAAGAAGTCGTCGGAGA
GCTCCGCTCGGGATGCGATGCCACCGCTGACCATCAGTGAATCGCGCAGA
AATATAGGTTCCGTCACCTGTTACCTGGAATCGAAGCTCTTCCAGCGCAA
CAGCCGCACGGGGTGCTATTCCACG
BO18333.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10660-PA | 1464 | CG10660-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10660-RC | 2310 | CG10660-RC | 702..1461 | 16..775 | 3800 | 100 | Plus |
| CG10660-RA | 1709 | CG10660-RA | 101..860 | 16..775 | 3800 | 100 | Plus |
| CG10660-RD | 2289 | CG10660-RD | 702..1440 | 16..775 | 3475 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12489739..12489975 | 252..16 | 1185 | 100 | Minus |
| 3L | 28110227 | 3L | 12488553..12488775 | 709..487 | 1115 | 100 | Minus |
| 3L | 28110227 | 3L | 12488828..12488960 | 487..355 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 12489012..12489117 | 354..249 | 530 | 100 | Minus |
| 3L | 28110227 | 3L | 12488152..12488221 | 775..706 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:20:09 has no hits.
BO18333.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:31 Download gff for
BO18333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:26 Download gff for
BO18333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 101..860 | 16..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:57 Download gff for
BO18333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 101..860 | 16..775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:57 Download gff for
BO18333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12488152..12488219 | 708..775 | 100 | <- | Minus |
| 3L | 12488555..12488774 | 488..707 | 100 | <- | Minus |
| 3L | 12488828..12488960 | 355..487 | 100 | <- | Minus |
| 3L | 12489012..12489115 | 251..354 | 100 | <- | Minus |
| 3L | 12489741..12489975 | 16..250 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:26 Download gff for
BO18333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12481252..12481319 | 708..775 | 100 | <- | Minus |
| arm_3L | 12481655..12481874 | 488..707 | 100 | <- | Minus |
| arm_3L | 12481928..12482060 | 355..487 | 100 | <- | Minus |
| arm_3L | 12482112..12482215 | 251..354 | 100 | <- | Minus |
| arm_3L | 12482841..12483075 | 16..250 | 100 | | Minus |
BO18333.complete Sequence
1495 bp assembled on 2007-03-23
GenBank Submission: FJ634382
> BO18333.complete
GAAGTTATCAGTCGACATGAACAAACTACGGGCCCTGCTGCCCGGCCAAC
ATTCTGGCTCCAATGGAGCATCCCGGCACTCCGTAACTCTGGAGCCGGAG
ATCGGATTCCAGATCACCATTGACAATCCAAAAAACAACGATCAGAGCAA
GGGTTCCACGGCGGTGCCCGAACTGAATGTCCATCTCATCGCCGCGCGAC
ATTTGCCCTCTCTTTTCGGCTTCAAGATCGTCCAGGGGTATCTTATAAAG
GTGAAGCTTTTTCCCGGTTCGAAACGCTTGGACAGCAGCATTCAGACGAA
TACATGGCCAAAGTTCAATGAAAATTTCAAGTTTCCCCTGGTGCCGGATA
TCAAATCCTCTATGAAACATGTGGCTCGACGTCCCGCAAATGGACAGGTA
AGCAGCTCGGATCAGGAGCCGGAACAACTCTTTTCCGGGCAATTTTTGGT
CTTTACGGTCTACGCGCTACTGGAACTTCCGGCAACGAACTTCAATCGCT
TTAACAAGACATACCGCTCGCTAAAAGATAGAAGCACCAGCTTTGTGCAG
CGTTTCGTGGATCCAACTGCGAGTGCTCCAAGTGAGGCAAAGACTGAGGC
CGGCGGAAAGCCAAGTGACCAGGGAAAGGGCAGGAAGAAGTCGTCGGAGA
GCTCCGCTCGGGATGCGATGCCACCGCTGACCATCAGTGAATCGCGCAGA
AATATAGGTTCCGTCACCTGTTACCTGGAATCGAAGCTCTTCCAGCGCAA
CAGCCGCACGGGGTGCTATTCCACGGAAGAGCTGTGGCTGCCTATCAAAG
ATATCACCACGACGGTGGCCAAGTCGTCACCCAGCAACAACAATTTGGTT
AACTCCACCAAGGGTGTGGTCGAACTGGCTCTCGAGGTGCGAGATCTCCT
GGAATGTGAGACACCTGTGGATATTTCACTGCCCCCTGCCACGCCCACGA
ACACGCCCACTACACCAGATCCTCCATCTCCACTTGCCACCCATGCGACC
AACAATTGGCAACGGATGACCGCCGAAGTGAAGCGGAAAATGGGCATTAG
CAATGCCGGCAACAGCGACTCCGGCAGATACCTGCTCCGGGTGACCACCA
CACGGATGCGTTGCTCCAATAAGGTCAAGGATGAGCTGGAGGCCACGGCG
AGCTCCGGTGTGTATGTGAAGACCACGGCCTTCGAGCACGGCATCTACAT
AGACGCCTGGAAGTCCCCCATTTTCTTTCCCTCGCTGTCCACCAAGTGGG
ACGATGGATCCGGTGAGGGTACGATAGATATACCGCTCCAGAGACTCGAT
CAGTTGGAGGACATCGTGCTGCGCATCACATTGGCCACCAAGAAGATGGG
CAAGAAACTGGTGCTCGGCACCGTCATAGTCGGCGGAGATCAGGCGGGGG
ATACGGGCTCCGAGCAGATGCGACTCATCCGGGAATCCCCGCCAGGTCAG
CGGGTGGCCGCCTGGCACTGTTACCACGCAAGCTTTCTAGACCAT
BO18333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10660-RC | 1464 | CG10660-PC | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| CG10660-RA | 1464 | CG10660-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| CG10660-RD | 1443 | CG10660-PD | 1..1440 | 17..1477 | 6955 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10660-RC | 2310 | CG10660-RC | 702..2163 | 16..1477 | 7310 | 100 | Plus |
| CG10660-RA | 1709 | CG10660-RA | 101..1562 | 16..1477 | 7310 | 100 | Plus |
| CG10660-RD | 2289 | CG10660-RD | 702..2142 | 16..1477 | 6960 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12486815..12487447 | 1477..845 | 3165 | 100 | Minus |
| 3L | 28110227 | 3L | 12489739..12489975 | 252..16 | 1185 | 100 | Minus |
| 3L | 28110227 | 3L | 12488553..12488775 | 709..487 | 1115 | 100 | Minus |
| 3L | 28110227 | 3L | 12488083..12488221 | 844..706 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 12488828..12488960 | 487..355 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 12489012..12489117 | 354..249 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:02:24 has no hits.
BO18333.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:15 Download gff for
BO18333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 1..1464 | 17..1481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:17 Download gff for
BO18333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 114..1580 | 16..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:59 Download gff for
BO18333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 102..1562 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:16 Download gff for
BO18333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 114..1580 | 16..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:56 Download gff for
BO18333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10660-RA | 102..1562 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:56 Download gff for
BO18333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12486813..12487447 | 845..1479 | 99 | <- | Minus |
| 3L | 12488083..12488219 | 708..844 | 100 | <- | Minus |
| 3L | 12488555..12488774 | 488..707 | 100 | <- | Minus |
| 3L | 12488828..12488960 | 355..487 | 100 | <- | Minus |
| 3L | 12489012..12489115 | 251..354 | 100 | <- | Minus |
| 3L | 12489741..12489974 | 17..250 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:59 Download gff for
BO18333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12481183..12481319 | 708..844 | 100 | <- | Minus |
| arm_3L | 12479913..12480547 | 845..1479 | 99 | <- | Minus |
| arm_3L | 12481655..12481874 | 488..707 | 100 | <- | Minus |
| arm_3L | 12481928..12482060 | 355..487 | 100 | <- | Minus |
| arm_3L | 12482112..12482215 | 251..354 | 100 | <- | Minus |
| arm_3L | 12482841..12483074 | 17..250 | 100 | | Minus |
BO18333.pep Sequence
Translation from 16 to 1495
> BO18333.pep
MNKLRALLPGQHSGSNGASRHSVTLEPEIGFQITIDNPKNNDQSKGSTAV
PELNVHLIAARHLPSLFGFKIVQGYLIKVKLFPGSKRLDSSIQTNTWPKF
NENFKFPLVPDIKSSMKHVARRPANGQVSSSDQEPEQLFSGQFLVFTVYA
LLELPATNFNRFNKTYRSLKDRSTSFVQRFVDPTASAPSEAKTEAGGKPS
DQGKGRKKSSESSARDAMPPLTISESRRNIGSVTCYLESKLFQRNSRTGC
YSTEELWLPIKDITTTVAKSSPSNNNLVNSTKGVVELALEVRDLLECETP
VDISLPPATPTNTPTTPDPPSPLATHATNNWQRMTAEVKRKMGISNAGNS
DSGRYLLRVTTTRMRCSNKVKDELEATASSGVYVKTTAFEHGIYIDAWKS
PIFFPSLSTKWDDGSGEGTIDIPLQRLDQLEDIVLRITLATKKMGKKLVL
GTVIVGGDQAGDTGSEQMRLIRESPPGQRVAAWHCYHASFLDH
BO18333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10660-PC | 487 | CG10660-PC | 1..487 | 1..487 | 2526 | 100 | Plus |
| CG10660-PA | 487 | CG10660-PA | 1..487 | 1..487 | 2526 | 100 | Plus |
| CG10660-PD | 480 | CG10660-PD | 1..480 | 1..487 | 2468 | 98.6 | Plus |
| CG10660-PB | 480 | CG10660-PB | 1..480 | 1..487 | 2468 | 98.6 | Plus |
