Clone Sequence Records
BO18334.3prime Sequence
617 bp (617 high quality bases) assembled on 2006-10-13
> BO18334.3prime
ATGGTCTAGAAAGCTTGCCTTGCAATAGTAGAGCCTCCCCTCCTTGCCCA
CATGAACACTCCAGCCGGGCTTGAGCTTTTCCTGTATGGCCTCCAAGTGT
CCATCAATTTCTGGCCAATTTTCGGTCATGCCAGCGATGACGCCCCCATG
ACTTTGACCCAAAAGTGGCCCATAGATCCCGGTGCCGCAGTTAGTTTCAT
TTGCTAACCCAGTGCTCAGCTCCGTCGATGCTGTACCCTCCACTTCCGTA
CATCCAGATGGGTCTGGTGTTGCTGTAGCCATTGCTGTGGCTGTTGTTGC
CATTGTCACTGGGATTCCGGAGGATTGGGTCAACGGACATCCGTTGGAGC
GGGTGGGCGTGGCATGGACAACAGAGCCATTTGTTGTCGGCAATGTTGTC
AATTGAGGCGATGATGTTCGTGTCAGTAGCAAGGGCTTGGGGTTGGATGT
TGCTCCTACGCCACCACAGACGCCTCCCACTCCGCCTGCTCCACCCGCGC
CACCAGCTGATGTTGCTCCTCCGGTCGATGTTGCTGTTGTGTTTGCGGCA
TTTTGTAGCGGATAGACATCACTATTCGAACGCCCCGAAGGCAGTAACAT
CATGTCGACTGATAACT
BO18334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6934-PA | 588 | CG6934-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-RB | 6686 | CG42788-RB | 333..916 | 603..20 | 2920 | 100 | Minus |
CG42788-RC | 6683 | CG42788-RC | 333..916 | 603..20 | 2920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15111592..15112176 | 19..603 | 2925 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 311..213 | 130 | 61.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6825 | 311..265 | 127 | 74.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6784 | 311..264 | 123 | 72.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2661 | 311..257 | 122 | 69.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6876 | 311..253 | 117 | 69.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2430 | 563..506 | 116 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6839 | 300..181 | 114 | 62.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2489 | 539..381 | 109 | 55.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2414 | 563..504 | 108 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2438 | 306..264 | 107 | 72.1 | Minus |
BO18334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:32 Download gff for
BO18334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-PA | 1..588 | 16..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:54 Download gff for
BO18334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 328..917 | 16..608 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:17 Download gff for
BO18334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 330..919 | 16..608 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:17 Download gff for
BO18334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15111586..15112179 | 11..608 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:54 Download gff for
BO18334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10937308..10937901 | 11..608 | 98 | | Plus |
BO18334.5prime Sequence
617 bp (617 high quality bases) assembled on 2006-10-13
> BO18334.5prime
GAAGTTATCAGTCGACATGATGTTACTGCCTTCGGGGCGTTCGAATAGTG
ATGTCTATCCGCTACAAAATGCCGCAAACACAACAGCAACATCGACCGGA
GGAGCAACATCAGCTGGTGGCGCGGGTGGAGCAGGCGGAGTGGGAGGCGT
CTGTGGTGGCGTAGGAGCAACATCCAACCCCAAGCCCTTGCTACTGACAC
GAACATCATCGCCTCAATTGACAACATTGCCGACAACAAATGGCTCTGTT
GTCCATGCCACGCCCACCCGCTCCAACGGATGTCCGTTGACCCAATCCTC
CGGAATCCCAGTGACAATGGCAACAACAGCCACAGCAATGGCTACAGCAA
CACCAGACCCATCTGGATGTACGGAAGTGGAGGGTACAGCATCGACGGAG
CTGAGCACTGGGTTAGCAAATGAAACTAACTGCGGCACCGGGATCTATGG
GCCACTTTTGGGTCAAAGTCATGGGGGCGTCATCGCTGGCATGACCGAAA
ATTGGCCAGAAATTGATGGACACTTGGAGGCCATACAGGAAAAGCTCAAG
CCCGGCTGGAGTGTTCATGTGGGCAAGGAGGGGAGGCTCTACTATTGCAA
GGCAAGCTTTCTAGACC
BO18334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6934-PA | 588 | CG6934-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-RB | 6686 | CG42788-RB | 333..916 | 17..600 | 2920 | 100 | Plus |
CG42788-RC | 6683 | CG42788-RC | 333..916 | 17..600 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15111592..15112176 | 601..17 | 2925 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 11:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 309..407 | 130 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6825 | 309..355 | 127 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6784 | 309..356 | 123 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2661 | 309..363 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6876 | 309..367 | 117 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2430 | 57..114 | 116 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6839 | 320..439 | 114 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2489 | 81..239 | 109 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2414 | 57..116 | 108 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2438 | 314..356 | 107 | 72.1 | Plus |
BO18334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:32 Download gff for
BO18334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-PA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:10 Download gff for
BO18334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 328..917 | 12..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:11 Download gff for
BO18334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 330..919 | 12..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:11 Download gff for
BO18334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15111586..15112179 | 12..609 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:10 Download gff for
BO18334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10937308..10937901 | 12..609 | 98 | | Minus |
BO18334.complete Sequence
619 bp assembled on 2006-10-11
GenBank Submission: FJ634383
> BO18334.complete
GAAGTTATCAGTCGACATGATGTTACTGCCTTCGGGGCGTTCGAATAGTG
ATGTCTATCCGCTACAAAATGCCGCAAACACAACAGCAACATCGACCGGA
GGAGCAACATCAGCTGGTGGCGCGGGTGGAGCAGGCGGAGTGGGAGGCGT
CTGTGGTGGCGTAGGAGCAACATCCAACCCCAAGCCCTTGCTACTGACAC
GAACATCATCGCCTCAATTGACAACATTGCCGACAACAAATGGCTCTGTT
GTCCATGCCACGCCCACCCGCTCCAACGGATGTCCGTTGACCCAATCCTC
CGGAATCCCAGTGACAATGGCAACAACAGCCACAGCAATGGCTACAGCAA
CACCAGACCCATCTGGATGTACGGAAGTGGAGGGTACAGCATCGACGGAG
CTGAGCACTGGGTTAGCAAATGAAACTAACTGCGGCACCGGGATCTATGG
GCCACTTTTGGGTCAAAGTCATGGGGGCGTCATCGCTGGCATGACCGAAA
ATTGGCCAGAAATTGATGGACACTTGGAGGCCATACAGGAAAAGCTCAAG
CCCGGCTGGAGTGTTCATGTGGGCAAGGAGGGGAGGCTCTACTATTGCAA
GGCAAGCTTTCTAGACCAT
BO18334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-RB | 4683 | CG42788-PB | 1..584 | 17..600 | 2920 | 100 | Plus |
CG42788-RC | 4680 | CG42788-PC | 1..584 | 17..600 | 2920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-RB | 6686 | CG42788-RB | 333..916 | 17..600 | 2920 | 100 | Plus |
CG42788-RC | 6683 | CG42788-RC | 333..916 | 17..600 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15111592..15112176 | 601..17 | 2925 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 12:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 309..407 | 130 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6825 | 309..355 | 127 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6784 | 309..356 | 123 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2661 | 309..363 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6876 | 309..367 | 117 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2430 | 57..114 | 116 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6839 | 320..439 | 114 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2489 | 81..239 | 109 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2414 | 57..116 | 108 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2438 | 314..356 | 107 | 72.1 | Plus |
BO18334.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:52 Download gff for
BO18334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-RA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:10 Download gff for
BO18334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-RA | 327..917 | 12..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:02 Download gff for
BO18334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 331..916 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:52 Download gff for
BO18334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-RA | 327..917 | 12..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:43 Download gff for
BO18334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 333..918 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:43 Download gff for
BO18334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15111589..15112176 | 17..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:02 Download gff for
BO18334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10937311..10937898 | 17..603 | 99 | | Minus |
BO18334.pep Sequence
Translation from 16 to 619
> BO18334.pep
MMLLPSGRSNSDVYPLQNAANTTATSTGGATSAGGAGGAGGVGGVCGGVG
ATSNPKPLLLTRTSSPQLTTLPTTNGSVVHATPTRSNGCPLTQSSGIPVT
MATTATAMATATPDPSGCTEVEGTASTELSTGLANETNCGTGIYGPLLGQ
SHGGVIAGMTENWPEIDGHLEAIQEKLKPGWSVHVGKEGRLYYCKASFLD
H
BO18334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-PC | 1559 | CG42788-PC | 1..194 | 1..194 | 1026 | 100 | Plus |
CG42788-PB | 1560 | CG42788-PB | 1..194 | 1..194 | 1026 | 100 | Plus |