Clone BO18334 Report

Search the DGRC for BO18334

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:34
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO18334.pep: validated full length
Sequenced Size:619

Clone Sequence Records

BO18334.3prime Sequence

617 bp (617 high quality bases) assembled on 2006-10-13

> BO18334.3prime
ATGGTCTAGAAAGCTTGCCTTGCAATAGTAGAGCCTCCCCTCCTTGCCCA
CATGAACACTCCAGCCGGGCTTGAGCTTTTCCTGTATGGCCTCCAAGTGT
CCATCAATTTCTGGCCAATTTTCGGTCATGCCAGCGATGACGCCCCCATG
ACTTTGACCCAAAAGTGGCCCATAGATCCCGGTGCCGCAGTTAGTTTCAT
TTGCTAACCCAGTGCTCAGCTCCGTCGATGCTGTACCCTCCACTTCCGTA
CATCCAGATGGGTCTGGTGTTGCTGTAGCCATTGCTGTGGCTGTTGTTGC
CATTGTCACTGGGATTCCGGAGGATTGGGTCAACGGACATCCGTTGGAGC
GGGTGGGCGTGGCATGGACAACAGAGCCATTTGTTGTCGGCAATGTTGTC
AATTGAGGCGATGATGTTCGTGTCAGTAGCAAGGGCTTGGGGTTGGATGT
TGCTCCTACGCCACCACAGACGCCTCCCACTCCGCCTGCTCCACCCGCGC
CACCAGCTGATGTTGCTCCTCCGGTCGATGTTGCTGTTGTGTTTGCGGCA
TTTTGTAGCGGATAGACATCACTATTCGAACGCCCCGAAGGCAGTAACAT
CATGTCGACTGATAACT

BO18334.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6934-PA 588 CG6934-RA 1..585 603..19 2925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-RB 6686 CG42788-RB 333..916 603..20 2920 100 Minus
CG42788-RC 6683 CG42788-RC 333..916 603..20 2920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15111592..15112176 19..603 2925 100 Plus
Blast to na_te.dros performed 2015-02-10 16:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6858 311..213 130 61.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6825 311..265 127 74.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6784 311..264 123 72.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2607..2661 311..257 122 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 311..253 117 69.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2430 563..506 116 69 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6839 300..181 114 62.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2489 539..381 109 55.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2414 563..504 108 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2396..2438 306..264 107 72.1 Minus

BO18334.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:32 Download gff for BO18334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6934-PA 1..588 16..603 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:54 Download gff for BO18334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 328..917 16..608 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:17 Download gff for BO18334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 330..919 16..608 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:17 Download gff for BO18334.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15111586..15112179 11..608 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:54 Download gff for BO18334.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10937308..10937901 11..608 98   Plus

BO18334.5prime Sequence

617 bp (617 high quality bases) assembled on 2006-10-13

> BO18334.5prime
GAAGTTATCAGTCGACATGATGTTACTGCCTTCGGGGCGTTCGAATAGTG
ATGTCTATCCGCTACAAAATGCCGCAAACACAACAGCAACATCGACCGGA
GGAGCAACATCAGCTGGTGGCGCGGGTGGAGCAGGCGGAGTGGGAGGCGT
CTGTGGTGGCGTAGGAGCAACATCCAACCCCAAGCCCTTGCTACTGACAC
GAACATCATCGCCTCAATTGACAACATTGCCGACAACAAATGGCTCTGTT
GTCCATGCCACGCCCACCCGCTCCAACGGATGTCCGTTGACCCAATCCTC
CGGAATCCCAGTGACAATGGCAACAACAGCCACAGCAATGGCTACAGCAA
CACCAGACCCATCTGGATGTACGGAAGTGGAGGGTACAGCATCGACGGAG
CTGAGCACTGGGTTAGCAAATGAAACTAACTGCGGCACCGGGATCTATGG
GCCACTTTTGGGTCAAAGTCATGGGGGCGTCATCGCTGGCATGACCGAAA
ATTGGCCAGAAATTGATGGACACTTGGAGGCCATACAGGAAAAGCTCAAG
CCCGGCTGGAGTGTTCATGTGGGCAAGGAGGGGAGGCTCTACTATTGCAA
GGCAAGCTTTCTAGACC

BO18334.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6934-PA 588 CG6934-RA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-RB 6686 CG42788-RB 333..916 17..600 2920 100 Plus
CG42788-RC 6683 CG42788-RC 333..916 17..600 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15111592..15112176 601..17 2925 100 Minus
Blast to na_te.dros performed 2015-02-08 11:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6858 309..407 130 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6825 309..355 127 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6784 309..356 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2607..2661 309..363 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 309..367 117 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2430 57..114 116 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6839 320..439 114 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2489 81..239 109 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2414 57..116 108 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2396..2438 314..356 107 72.1 Plus

BO18334.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:32 Download gff for BO18334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6934-PA 1..588 17..604 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:10 Download gff for BO18334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 328..917 12..604 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:11 Download gff for BO18334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 330..919 12..604 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:11 Download gff for BO18334.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15111586..15112179 12..609 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:10 Download gff for BO18334.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10937308..10937901 12..609 98   Minus

BO18334.complete Sequence

619 bp assembled on 2006-10-11

GenBank Submission: FJ634383

> BO18334.complete
GAAGTTATCAGTCGACATGATGTTACTGCCTTCGGGGCGTTCGAATAGTG
ATGTCTATCCGCTACAAAATGCCGCAAACACAACAGCAACATCGACCGGA
GGAGCAACATCAGCTGGTGGCGCGGGTGGAGCAGGCGGAGTGGGAGGCGT
CTGTGGTGGCGTAGGAGCAACATCCAACCCCAAGCCCTTGCTACTGACAC
GAACATCATCGCCTCAATTGACAACATTGCCGACAACAAATGGCTCTGTT
GTCCATGCCACGCCCACCCGCTCCAACGGATGTCCGTTGACCCAATCCTC
CGGAATCCCAGTGACAATGGCAACAACAGCCACAGCAATGGCTACAGCAA
CACCAGACCCATCTGGATGTACGGAAGTGGAGGGTACAGCATCGACGGAG
CTGAGCACTGGGTTAGCAAATGAAACTAACTGCGGCACCGGGATCTATGG
GCCACTTTTGGGTCAAAGTCATGGGGGCGTCATCGCTGGCATGACCGAAA
ATTGGCCAGAAATTGATGGACACTTGGAGGCCATACAGGAAAAGCTCAAG
CCCGGCTGGAGTGTTCATGTGGGCAAGGAGGGGAGGCTCTACTATTGCAA
GGCAAGCTTTCTAGACCAT

BO18334.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-RB 4683 CG42788-PB 1..584 17..600 2920 100 Plus
CG42788-RC 4680 CG42788-PC 1..584 17..600 2920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-RB 6686 CG42788-RB 333..916 17..600 2920 100 Plus
CG42788-RC 6683 CG42788-RC 333..916 17..600 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15111592..15112176 601..17 2925 100 Minus
Blast to na_te.dros performed 2014-11-27 12:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6858 309..407 130 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6825 309..355 127 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6784 309..356 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2607..2661 309..363 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 309..367 117 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2430 57..114 116 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6839 320..439 114 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2489 81..239 109 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2414 57..116 108 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2396..2438 314..356 107 72.1 Plus

BO18334.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:52 Download gff for BO18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6934-RA 1..588 17..604 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:10 Download gff for BO18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6934-RA 327..917 12..604 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:02 Download gff for BO18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 331..916 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:52 Download gff for BO18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG6934-RA 327..917 12..604 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:43 Download gff for BO18334.complete
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 333..918 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:43 Download gff for BO18334.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15111589..15112176 17..603 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:02 Download gff for BO18334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10937311..10937898 17..603 99   Minus

BO18334.pep Sequence

Translation from 16 to 619

> BO18334.pep
MMLLPSGRSNSDVYPLQNAANTTATSTGGATSAGGAGGAGGVGGVCGGVG
ATSNPKPLLLTRTSSPQLTTLPTTNGSVVHATPTRSNGCPLTQSSGIPVT
MATTATAMATATPDPSGCTEVEGTASTELSTGLANETNCGTGIYGPLLGQ
SHGGVIAGMTENWPEIDGHLEAIQEKLKPGWSVHVGKEGRLYYCKASFLD
H

BO18334.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-PC 1559 CG42788-PC 1..194 1..194 1026 100 Plus
CG42788-PB 1560 CG42788-PB 1..194 1..194 1026 100 Plus