Clone Sequence Records
BO18338.3prime Sequence
789 bp (744 high quality bases) assembled on 2006-10-13
> BO18338.3prime
ATGGTCTAGAAAGCTTGCGTCGTCAAATTCGAACAATGGTTTGCCATTGG
TGTCCCAGGTGTTTTTGCATTTCTTAAAGGCACAAACCAAATAAACAGTT
GCTGCTTCCCATTCGGATTTCGAGAGGGTTCCCACCGACCTGCTTCGCTG
TGCTCCCTGAAAGTTACTCACATGGGCGAACTCTTCATCATTCTCGCAGC
GCTGTGGCTGCACCGACTCCAAGCCGGACATTCGCTGCAAAAGATGCCGC
CCGTGGTGCAGATTTTCCTTGTAGTAATCCGCAAATGTGGAGCGCTTCAA
TAGCTGCAGACCGTATTTTCTGCCCAGCTTGACCAGCGTGGGAAAATGCA
CTAGGAACTCGGGGCAATCGACAACGCCCTCCAAGTGAAACTGATACTTG
GCTCCGAAAAGCGGCAAAGGATCCGTTTCGCAGTCAAATTCAATGCTGTA
CACATCGTTACCGAAACGCCGGGCATCTGGACCGGCTGCCCTTAGCCTGC
GGATGATCTCGTAGGCATCCGGCATTGTGGCTATGAAGAAGCCACCGGGT
TTCAGACACTCGGCTGCATTCCGCATCATGCAATCTGCCTGCGCCATTGA
CTCGAAGCAATAGTGAAAGGCAAACTGACAGGACACGAGATTCAGCTGAA
GCGAAGGATCCTTATACCGTTCCCGCAGGCGCACTAATGTGGAGTCGCAG
GCAAAAAACTCCGCGGTAAACTTATTCGCAAATTTCGACTTCTCCGAACG
CTGCAGGATGTCCTGATATCGCCGCTGGCACTGCTCCAC
BO18338.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3688-PA | 1284 | l(2)35Bd-RA | 511..1281 | 789..19 | 3780 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-RA | 1769 | CG3688-RA | 590..1360 | 789..19 | 3810 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15010528..15011218 | 789..99 | 3425 | 99.7 | Minus |
| 2L | 23513712 | 2L | 15011279..15011355 | 95..19 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:25:49 has no hits.
BO18338.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:33 Download gff for
BO18338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3688-PA | 511..1284 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:52:03 Download gff for
BO18338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 590..1360 | 19..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:50 Download gff for
BO18338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 590..1360 | 19..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:50 Download gff for
BO18338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15010528..15011218 | 99..789 | 99 | -> | Minus |
| 2L | 15011276..15011355 | 19..98 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:52:03 Download gff for
BO18338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15010528..15011218 | 99..789 | 99 | -> | Minus |
| arm_2L | 15011276..15011355 | 19..98 | 98 | | Minus |
BO18338.5prime Sequence
769 bp (710 high quality bases) assembled on 2006-10-13
> BO18338.5prime
GAAGTTATCAGTCGACATGAGTCTTAATTACGAACAAAACGCGGCAGACG
AGCAGTTCGCCCGCGCACACAAAGCAGTCAGCCTGTCGGACGACGAGGAG
AGCGAGGGCCAAGCGGAGACCACGTCTGCACCAAATCAGGAGCCGCATGT
TAGTAAATCACCGAGGGAGTACTACGATGAGCCTGGCGGGAAGGGCAATG
GAAGTGGAGCAGATGATCAGGATGAGCCGGAAACGGAGGCTGCCAGCGGA
GCGGCCAACACACATGTGGTGGCACACCACTACAACGAGCTGAAGGAGGC
GGGCCGCAAGGATCGTCAGAAGTCAAAGATATTCTTCATGAGGAACTTTA
ACAACTGGATCAAGAGCCAGCTGATCAACGAGTATATGTCGCAGATTAAG
CAGAACAAACGCATGGGTGATGCTCTCAGAGTTCTGGACATGTGCTGCGG
CAAGGGCGGTGACCTTCTCAAATGGGAGAAGGCTGCCATCTCCCACCTCA
TCTGCACCGACATCGCTGAGGTGTCGGTGGAGCAGTGCCAGCGGCGATAT
CAGGACATCCTGCAGCGATCGGAGAAGTCGAAATTTGCGAATAAGTTTAC
CGCGGAGTTTTTTGCCTGCGACTCCACATTAGTGCGCCTGCGGGAACGGT
ATAAGGATCCTTCGCTTCAGCTGAATCTCGTGTCCTGTCAGTTTGCCTTT
CACTATTGCTTCGAGTCAATGGCGCAGGCAGATTGCATGATGCGGAATGC
AGCCGAGTGTCTGAAACCG
BO18338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3688-PA | 1284 | l(2)35Bd-RA | 1..752 | 17..768 | 3760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-RA | 1769 | CG3688-RA | 80..831 | 17..768 | 3760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15010018..15010769 | 17..768 | 3760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:15:35 has no hits.
BO18338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:33 Download gff for
BO18338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3688-PA | 1..752 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:49:15 Download gff for
BO18338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 71..831 | 7..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:39 Download gff for
BO18338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 71..831 | 7..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:39 Download gff for
BO18338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15010009..15010769 | 7..769 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:49:15 Download gff for
BO18338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15010009..15010769 | 7..769 | 99 | | Plus |
BO18338.complete Sequence
1315 bp assembled on 2006-12-18
GenBank Submission: FJ634384
> BO18338.complete
GAAGTTATCAGTCGACATGAGTCTTAATTACGAACAAAACGCGGCAGACG
AGCAGTTCGCCCGCGCACACAAAGCAGTCAGCCTGTCGGACGACGAGGAG
AGCGAGGGCCAAGCGGAGACCACGTCTGCACCAAATCAGGAGCCGCATGT
TAGTAAATCACCGAGGGAGTACTACGATGAGCCTGGCGGGAAGGGCAATG
GAAGTGGAGCAGATGATCAGGATGAGCCGGAAACGGAGGCTGCCAGCGGA
GCGGCCAACACACATGTGGTGGCACACCACTACAACGAGCTGAAGGAGGC
GGGCCGCAAGGATCGTCAGAAGTCAAAGATATTCTTCATGAGGAACTTTA
ACAACTGGATCAAGAGCCAGCTGATCAACGAGTATATGTCGCAGATTAAG
CAGAACAAACGCATGGGTGATGCTCTCAGAGTTCTGGACATGTGCTGCGG
CAAGGGCGGTGACCTTCTCAAATGGGAGAAGGCTGCCATCTCCCACCTCA
TCTGCACCGACATCGCTGAGGTGTCGGTGGAGCAGTGCCAGCGGCGATAT
CAGGACATCCTGCAGCGATCGGAGAAGTCGAAATTTGCGAATAAGTTTAC
CGCGGAGTTTTTTGCCTGCGACTCCACATTAGTGCGCCTGCGGGAACGGT
ATAAGGATCCTTCGCTTCAGCTGAATCTCGTGTCCTGTCAGTTTGCCTTT
CACTATTGCTTCGAGTCAATGGCGCAGGCAGATTGCATGATGCGGAATGC
AGCCGAGTGTCTGAAACCCGGTGGCTTCTTCATAGCCACAATGCCGGATG
CCTACGAGATCATCCGCAGGCTAAGGGCAGCCGGTCCAGATGCCCGGCGT
TTCGGTAACGATGTGTACAGCATTGAATTTGACTGCGAAACGGATCCTTT
GCCGCTTTTCGGAGCCAAGTATCAGTTTCACTTGGAGGGCGTTGTCGATT
GCCCCGAGTTCCTAGTGCATTTTCCCACGCTGGTCAAGCTGGGCAGAAAA
TACGGTCTGCAGCTATTGAAGCGCTCCACATTTGCGGATTACTACAAGGA
AAATCTGCACCACGGGCGGCATCTTCTGCAGCGAATGTCCGGCTTGGAGT
CGGTGCAGCCACAGCGCTGCGAGAATGATGAAGAGTTCGCCCATGTGAGT
AACTTTCAGGGAGCACAGCGAAGCAGGTCGGTGGGAACCCTCTCGAAATC
CGAATGGGAAGCAGCAACTCTTTATTTGGTTTGTGCCTTTAAGAAATGCA
AAAACACCTGGGACACCAATGGCAAACCATTGTTCGAATTTGACGACGCA
AGCTTTCTAGACCAT
BO18338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-RA | 1284 | CG3688-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-RA | 1769 | CG3688-RA | 80..1360 | 17..1297 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15010018..15011218 | 17..1217 | 6005 | 100 | Plus |
| 2L | 23513712 | 2L | 15011276..15011355 | 1218..1297 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:20:48 has no hits.
BO18338.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:35 Download gff for
BO18338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 1..1284 | 17..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:04 Download gff for
BO18338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 69..1358 | 7..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:58 Download gff for
BO18338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 80..1360 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:35 Download gff for
BO18338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 69..1358 | 7..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:32 Download gff for
BO18338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 80..1360 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:32 Download gff for
BO18338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15010018..15011218 | 17..1217 | 100 | -> | Plus |
| 2L | 15011276..15011355 | 1218..1299 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:58 Download gff for
BO18338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15011276..15011355 | 1218..1299 | 97 | | Plus |
| arm_2L | 15010018..15011218 | 17..1217 | 100 | -> | Plus |
BO18338.pep Sequence
Translation from 16 to 1315
> BO18338.pep
MSLNYEQNAADEQFARAHKAVSLSDDEESEGQAETTSAPNQEPHVSKSPR
EYYDEPGGKGNGSGADDQDEPETEAASGAANTHVVAHHYNELKEAGRKDR
QKSKIFFMRNFNNWIKSQLINEYMSQIKQNKRMGDALRVLDMCCGKGGDL
LKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEFFA
CDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLK
PGGFFIATMPDAYEIIRRLRAAGPDARRFGNDVYSIEFDCETDPLPLFGA
KYQFHLEGVVDCPEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENLHHG
RHLLQRMSGLESVQPQRCENDEEFAHVSNFQGAQRSRSVGTLSKSEWEAA
TLYLVCAFKKCKNTWDTNGKPLFEFDDASFLDH
BO18338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-PA | 427 | CG3688-PA | 1..427 | 1..427 | 2280 | 100 | Plus |
