Clone BO18340 Report

Search the DGRC for BO18340

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG12540-RA
Protein status:BO18340.pep: validated full length
Sequenced Size:475

Clone Sequence Records

BO18340.3prime Sequence

473 bp (473 high quality bases) assembled on 2006-10-13

> BO18340.3prime
ATGGTCTAGAAAGCTTGCGTAGGGATTATTGCAGCAGCAGTTCTTGATGA
GGGCGTGCTCGTAACAGGATTTGGCATAAAGCAGCGAGCAGTCGTAGTAC
AAACACTGGGGCGGTCTCAACTGCGGGGCACCGCCTGGAAAATCGCAGCA
ACAGGCATCGTGTACCATCTTGTGCGAGCAGTACGAGTAAACCGACGAAT
CGCACAGCGGGCAGCCCGGCTGCTGCGCTGGTCCGTAGCCGCCTTGTCCC
GGATATCCGGCTGCGGAACCGGGTCCAAACCCGGCCCCAGGCCCTAGACC
ACCAGCGCCCACGCCACCAAAGGAGGGGCCCAGGCCGTTGCCGAAGTTCT
GGCCACCGCCGAATTGACGCGTTGAACTTTCCTGTTTTGCCGTCACCACC
ACAACGATTGCCATTAAAACGAGCAGCTGCACGTGGCTCACACGGCGTAT
GCGCAACATGTCGACTGATAACT

BO18340.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12540-PA 444 CG12540-RA 1..441 459..19 2180 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12540-RA 772 CG12540-RA 113..553 459..19 2190 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14496539..14496781 376..134 1200 99.6 Minus
X 23542271 X 14496903..14497021 137..19 595 100 Minus
X 23542271 X 14496247..14496334 459..372 425 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 17:39:08 has no hits.

BO18340.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:34 Download gff for BO18340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12540-PA 1..444 16..459 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:02 Download gff for BO18340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12540-RA 106..557 13..464 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:57 Download gff for BO18340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12540-RA 108..559 13..464 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:57 Download gff for BO18340.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14496242..14496334 372..464 96 -> Minus
X 14496544..14496780 135..371 100 -> Minus
X 14496906..14497027 13..134 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:02 Download gff for BO18340.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14390275..14390367 372..464 96 -> Minus
arm_X 14390577..14390813 135..371 100 -> Minus
arm_X 14390939..14391060 13..134 97   Minus

BO18340.5prime Sequence

473 bp (473 high quality bases) assembled on 2006-10-13

> BO18340.5prime
GAAGTTATCAGTCGACATGTTGCGCATACGCCGTGTGAGCCACGTGCAGC
TGCTCGTTCTAATGGCAATCGTTGTGGTGGTGACGGCAAAACAGGAAAGT
TCAACGCGTCAATTCGGCGGTGGCCAGAACTTCGGCAACGGCCTGGGCCC
CTCCTTTGGTGGCGTGGGCGCTGGTGGTCTAGGGCCTGGGGCCGGGTTTG
GACCCGGTTCCGCAGCCGGATATCCGGGACAAGGCGGCTACGGACCAGCG
CAGCAGCCGGGCTGCCCGCTGTGCGATTCGTCGGTTTACTCGTACTGCTC
GCACAAGATGGTACACGATGCCTGTTGCTGCGATTTTCCAGGCGGTGCCC
CGCAGTTGAGACCGCCCCAGTGTTTGTACTACGACTGCTCGCTGCTTTAT
GCCAAATCCTGTTACGAGCACGCCCTCATCAAGAACTGCTGCTGCAATAA
TCCCTACGCAAGCTTTCTAGACC

BO18340.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12540-PA 444 CG12540-RA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12540-RA 772 CG12540-RA 113..553 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14496539..14496781 100..342 1200 99.6 Plus
X 23542271 X 14496903..14497021 339..457 595 100 Plus
X 23542271 X 14496247..14496334 17..104 440 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:10:50 has no hits.

BO18340.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:34 Download gff for BO18340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12540-PA 1..444 17..460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:31 Download gff for BO18340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12540-RA 106..557 12..463 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:58 Download gff for BO18340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12540-RA 108..559 12..463 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:58 Download gff for BO18340.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14496242..14496334 12..104 97 -> Plus
X 14496544..14496780 105..341 100 -> Plus
X 14496906..14497027 342..463 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:31 Download gff for BO18340.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14390275..14390367 12..104 97 -> Plus
arm_X 14390577..14390813 105..341 100 -> Plus
arm_X 14390939..14391060 342..463 97   Plus

BO18340.complete Sequence

475 bp assembled on 2006-10-11

GenBank Submission: FJ634385

> BO18340.complete
GAAGTTATCAGTCGACATGTTGCGCATACGCCGTGTGAGCCACGTGCAGC
TGCTCGTTCTAATGGCAATCGTTGTGGTGGTGACGGCAAAACAGGAAAGT
TCAACGCGTCAATTCGGCGGTGGCCAGAACTTCGGCAACGGCCTGGGCCC
CTCCTTTGGTGGCGTGGGCGCTGGTGGTCTAGGGCCTGGGGCCGGGTTTG
GACCCGGTTCCGCAGCCGGATATCCGGGACAAGGCGGCTACGGACCAGCG
CAGCAGCCGGGCTGCCCGCTGTGCGATTCGTCGGTTTACTCGTACTGCTC
GCACAAGATGGTACACGATGCCTGTTGCTGCGATTTTCCAGGCGGTGCCC
CGCAGTTGAGACCGCCCCAGTGTTTGTACTACGACTGCTCGCTGCTTTAT
GCCAAATCCTGTTACGAGCACGCCCTCATCAAGAACTGCTGCTGCAATAA
TCCCTACGCAAGCTTTCTAGACCAT

BO18340.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12540-RA 444 CG12540-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12540-RA 772 CG12540-RA 113..553 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14496539..14496781 100..342 1200 99.6 Plus
X 23542271 X 14496903..14497021 339..457 595 100 Plus
X 23542271 X 14496247..14496334 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:47:06 has no hits.

BO18340.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:53 Download gff for BO18340.complete
Subject Subject Range Query Range Percent Splice Strand
CG12540-RA 1..444 17..460 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:51 Download gff for BO18340.complete
Subject Subject Range Query Range Percent Splice Strand
CG12540-RA 106..557 12..463 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:29 Download gff for BO18340.complete
Subject Subject Range Query Range Percent Splice Strand
CG12540-RA 116..551 22..459 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:53 Download gff for BO18340.complete
Subject Subject Range Query Range Percent Splice Strand
CG12540-RA 106..557 12..463 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:52 Download gff for BO18340.complete
Subject Subject Range Query Range Percent Splice Strand
CG12540-RA 118..553 22..459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:52 Download gff for BO18340.complete
Subject Subject Range Query Range Percent Splice Strand
X 14496544..14496780 105..341 100 -> Plus
X 14496906..14497021 342..459 98   Plus
X 14496252..14496334 22..104 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:29 Download gff for BO18340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14390285..14390367 22..104 100 -> Plus
arm_X 14390577..14390813 105..341 100 -> Plus
arm_X 14390939..14391054 342..459 98   Plus

BO18340.pep Sequence

Translation from 16 to 475

> BO18340.pep
MLRIRRVSHVQLLVLMAIVVVVTAKQESSTRQFGGGQNFGNGLGPSFGGV
GAGGLGPGAGFGPGSAAGYPGQGGYGPAQQPGCPLCDSSVYSYCSHKMVH
DACCCDFPGGAPQLRPPQCLYYDCSLLYAKSCYEHALIKNCCCNNPYASF
LDH

BO18340.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12540-PA 147 CG12540-PA 1..147 1..147 828 100 Plus