Clone Sequence Records
BO18340.3prime Sequence
473 bp (473 high quality bases) assembled on 2006-10-13
> BO18340.3prime
ATGGTCTAGAAAGCTTGCGTAGGGATTATTGCAGCAGCAGTTCTTGATGA
GGGCGTGCTCGTAACAGGATTTGGCATAAAGCAGCGAGCAGTCGTAGTAC
AAACACTGGGGCGGTCTCAACTGCGGGGCACCGCCTGGAAAATCGCAGCA
ACAGGCATCGTGTACCATCTTGTGCGAGCAGTACGAGTAAACCGACGAAT
CGCACAGCGGGCAGCCCGGCTGCTGCGCTGGTCCGTAGCCGCCTTGTCCC
GGATATCCGGCTGCGGAACCGGGTCCAAACCCGGCCCCAGGCCCTAGACC
ACCAGCGCCCACGCCACCAAAGGAGGGGCCCAGGCCGTTGCCGAAGTTCT
GGCCACCGCCGAATTGACGCGTTGAACTTTCCTGTTTTGCCGTCACCACC
ACAACGATTGCCATTAAAACGAGCAGCTGCACGTGGCTCACACGGCGTAT
GCGCAACATGTCGACTGATAACT
BO18340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12540-PA | 444 | CG12540-RA | 1..441 | 459..19 | 2180 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12540-RA | 772 | CG12540-RA | 113..553 | 459..19 | 2190 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14496539..14496781 | 376..134 | 1200 | 99.6 | Minus |
X | 23542271 | X | 14496903..14497021 | 137..19 | 595 | 100 | Minus |
X | 23542271 | X | 14496247..14496334 | 459..372 | 425 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:39:08 has no hits.
BO18340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:34 Download gff for
BO18340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-PA | 1..444 | 16..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:02 Download gff for
BO18340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-RA | 106..557 | 13..464 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:57 Download gff for
BO18340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-RA | 108..559 | 13..464 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:57 Download gff for
BO18340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14496242..14496334 | 372..464 | 96 | -> | Minus |
X | 14496544..14496780 | 135..371 | 100 | -> | Minus |
X | 14496906..14497027 | 13..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:02 Download gff for
BO18340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14390275..14390367 | 372..464 | 96 | -> | Minus |
arm_X | 14390577..14390813 | 135..371 | 100 | -> | Minus |
arm_X | 14390939..14391060 | 13..134 | 97 | | Minus |
BO18340.5prime Sequence
473 bp (473 high quality bases) assembled on 2006-10-13
> BO18340.5prime
GAAGTTATCAGTCGACATGTTGCGCATACGCCGTGTGAGCCACGTGCAGC
TGCTCGTTCTAATGGCAATCGTTGTGGTGGTGACGGCAAAACAGGAAAGT
TCAACGCGTCAATTCGGCGGTGGCCAGAACTTCGGCAACGGCCTGGGCCC
CTCCTTTGGTGGCGTGGGCGCTGGTGGTCTAGGGCCTGGGGCCGGGTTTG
GACCCGGTTCCGCAGCCGGATATCCGGGACAAGGCGGCTACGGACCAGCG
CAGCAGCCGGGCTGCCCGCTGTGCGATTCGTCGGTTTACTCGTACTGCTC
GCACAAGATGGTACACGATGCCTGTTGCTGCGATTTTCCAGGCGGTGCCC
CGCAGTTGAGACCGCCCCAGTGTTTGTACTACGACTGCTCGCTGCTTTAT
GCCAAATCCTGTTACGAGCACGCCCTCATCAAGAACTGCTGCTGCAATAA
TCCCTACGCAAGCTTTCTAGACC
BO18340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12540-PA | 444 | CG12540-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12540-RA | 772 | CG12540-RA | 113..553 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14496539..14496781 | 100..342 | 1200 | 99.6 | Plus |
X | 23542271 | X | 14496903..14497021 | 339..457 | 595 | 100 | Plus |
X | 23542271 | X | 14496247..14496334 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:10:50 has no hits.
BO18340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:34 Download gff for
BO18340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-PA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:31 Download gff for
BO18340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-RA | 106..557 | 12..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:58 Download gff for
BO18340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-RA | 108..559 | 12..463 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:58 Download gff for
BO18340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14496242..14496334 | 12..104 | 97 | -> | Plus |
X | 14496544..14496780 | 105..341 | 100 | -> | Plus |
X | 14496906..14497027 | 342..463 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:31 Download gff for
BO18340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14390275..14390367 | 12..104 | 97 | -> | Plus |
arm_X | 14390577..14390813 | 105..341 | 100 | -> | Plus |
arm_X | 14390939..14391060 | 342..463 | 97 | | Plus |
BO18340.complete Sequence
475 bp assembled on 2006-10-11
GenBank Submission: FJ634385
> BO18340.complete
GAAGTTATCAGTCGACATGTTGCGCATACGCCGTGTGAGCCACGTGCAGC
TGCTCGTTCTAATGGCAATCGTTGTGGTGGTGACGGCAAAACAGGAAAGT
TCAACGCGTCAATTCGGCGGTGGCCAGAACTTCGGCAACGGCCTGGGCCC
CTCCTTTGGTGGCGTGGGCGCTGGTGGTCTAGGGCCTGGGGCCGGGTTTG
GACCCGGTTCCGCAGCCGGATATCCGGGACAAGGCGGCTACGGACCAGCG
CAGCAGCCGGGCTGCCCGCTGTGCGATTCGTCGGTTTACTCGTACTGCTC
GCACAAGATGGTACACGATGCCTGTTGCTGCGATTTTCCAGGCGGTGCCC
CGCAGTTGAGACCGCCCCAGTGTTTGTACTACGACTGCTCGCTGCTTTAT
GCCAAATCCTGTTACGAGCACGCCCTCATCAAGAACTGCTGCTGCAATAA
TCCCTACGCAAGCTTTCTAGACCAT
BO18340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12540-RA | 444 | CG12540-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12540-RA | 772 | CG12540-RA | 113..553 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14496539..14496781 | 100..342 | 1200 | 99.6 | Plus |
X | 23542271 | X | 14496903..14497021 | 339..457 | 595 | 100 | Plus |
X | 23542271 | X | 14496247..14496334 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:47:06 has no hits.
BO18340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:53 Download gff for
BO18340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-RA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:51 Download gff for
BO18340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-RA | 106..557 | 12..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:29 Download gff for
BO18340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-RA | 116..551 | 22..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:53 Download gff for
BO18340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-RA | 106..557 | 12..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:52 Download gff for
BO18340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12540-RA | 118..553 | 22..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:52 Download gff for
BO18340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14496544..14496780 | 105..341 | 100 | -> | Plus |
X | 14496906..14497021 | 342..459 | 98 | | Plus |
X | 14496252..14496334 | 22..104 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:29 Download gff for
BO18340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14390285..14390367 | 22..104 | 100 | -> | Plus |
arm_X | 14390577..14390813 | 105..341 | 100 | -> | Plus |
arm_X | 14390939..14391054 | 342..459 | 98 | | Plus |
BO18340.pep Sequence
Translation from 16 to 475
> BO18340.pep
MLRIRRVSHVQLLVLMAIVVVVTAKQESSTRQFGGGQNFGNGLGPSFGGV
GAGGLGPGAGFGPGSAAGYPGQGGYGPAQQPGCPLCDSSVYSYCSHKMVH
DACCCDFPGGAPQLRPPQCLYYDCSLLYAKSCYEHALIKNCCCNNPYASF
LDH
BO18340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12540-PA | 147 | CG12540-PA | 1..147 | 1..147 | 828 | 100 | Plus |