Clone BO18342 Report

Search the DGRC for BO18342

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptSpx-RA
Protein status:BO18342.pep: validated full length
Sequenced Size:1075

Clone Sequence Records

BO18342.3prime Sequence

758 bp (661 high quality bases) assembled on 2006-10-13

> BO18342.3prime
ATGGTCTAGAAAGCTTGCGTACTGGTAGCCGTCGGGTTGATAGGGCCGTG
CGTAGGGCGTGGGTGGGAAGGGCACGGGCGGCGGACGCCAGTTGGTGGGC
GGTGGTCTGGGCGGAGGAGCAGGCATGCCGGGCGGTGCCCATGCATTTGG
TTGCATCATGCGAGGCGGCGGCGGAATGCCCATTGCTGGCGGCAGCGGCG
GCTGTCCGCCGGTCATCGGTGGCAACGGAGGCGGCGGTATCGTAGCTGGG
AACGGTGCAGGCTGGGGAACGGGCGGCGGCGGTGCTAGCATGCCCATATT
GTTATTCGAAACGGGCACCACCGGCGGCGGCGGCGCCATCATGGGTGGCG
GCATCATCTGGCCCGGCATCTGGGCCGGGATCTGGCCCGGCATCTGGGGC
ATCATGGTTTGCACCGGTGCATCGGCGAACAATTGATGCGGCCGGTCTGC
ATGGGTCGATGGATTCTGGGCGGCCAACAGGCGCTCCGCAGCCGAACCGT
GACGCTCGCCCTTGTGATCCTTCTTGAAGGCATAGGACACGGAAATGGGA
CGGTTGCACAGGTACTGGCCGTTCATGGCGTCCATGGCCGCATCGCTGGC
CTCGAAGCTGGCAAAGTTGATGAAACGCAAAGCTCTTAGACTTGCCCGTC
TTCTGGGTCTCGCATGATCTTCGGCGTCTGCAATATTACGCCGAAGGCGG
AAAACGTATCGTACAGCAGCTTCTCGTCCCCTTCCCCGTCTAGGTTGTCA
ATGAAGAT

BO18342.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3780-PA 1044 Spx-RA 436..1041 624..19 3030 100 Minus
CG3780-PA 1044 Spx-RA 304..410 758..652 385 94.3 Minus
CG3780-PA 1044 Spx-RA 410..437 651..624 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-RA 1643 CG3780-RA 393..1130 758..19 3560 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6256346..6257083 758..19 3510 98.9 Minus
Blast to na_te.dros performed on 2015-02-08 11:56:49 has no hits.

BO18342.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:36 Download gff for BO18342.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3780-PA 304..1044 15..758 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:21 Download gff for BO18342.3prime
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 393..1139 6..758 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:18 Download gff for BO18342.3prime
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 393..1139 6..758 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:18 Download gff for BO18342.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6256346..6257092 6..758 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:21 Download gff for BO18342.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6150379..6151125 6..758 98   Minus

BO18342.5prime Sequence

691 bp (683 high quality bases) assembled on 2006-10-13

> BO18342.5prime
GAAGTTATCAGTCGACATGGCGGCAGGTCCAATTGCTGAACGCAACCAAG
ATGCCACCATCTATGCCGGCGGTCTTGACGACAAGGTGTCGGAAACGCTG
CTTTGGGAGCTGTTTGTCCAGGCAGGACCAGTGGTGAACGTACACATGCC
CAAGGATCGTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCC
TCAGCGAGGAAGACGCCGACTATGGAATAAAGATCATGAACATGATCAAG
CTTTACGGCAAGCCCATTCGCGTGAACAAGGCGTCGGCGCATCAGAAGAA
CCTGGACGTCGGCGCCAACATCTTCATTGGCAACCTAGACGTGGAAGTGG
ACGAGAAGCTGCTGTACGATACGTTCTCCGCCTTCGGCGTTATACTGCAG
ACGCCGAAGATCATGCGAGACCCAGAGACGGGCAAGTCTAAGAGCTTTGC
GTTCATCAACTTTGCCAGCTTCGAGGCCAGCGATGCGGCCATGGACGCCA
TGAACGGCCAGTACCTGTGCAACCGTCCCATTTCCGTGTCCTATGCCTTC
AAGAAGGATCACAAGGGCGAGCGTCACGGTTCGGCTGCGGAGCGCCTGTT
GGCCGCCCAGAATCCATCGACCCATGCAGACCGGCCGCATCAATTGTTCG
CCGATGCACCGGTGCAAACCATGATGCTCCAGATGCCGGGG

BO18342.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3780-PA 1044 Spx-RA 1..674 17..690 3345 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-RA 1643 CG3780-RA 86..763 13..690 3360 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6256160..6256716 134..690 2770 99.8 Plus
X 23542271 X 6256017..6256102 49..134 430 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:47:49 has no hits.

BO18342.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:36 Download gff for BO18342.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3780-PA 1..674 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:53 Download gff for BO18342.5prime
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 79..763 7..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:53 Download gff for BO18342.5prime
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 79..763 7..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:53 Download gff for BO18342.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6255900..6255944 7..50 91 -> Plus
X 6256019..6256102 51..134 100 -> Plus
X 6256161..6256716 135..691 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:53 Download gff for BO18342.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6149933..6149977 7..50 91 -> Plus
arm_X 6150052..6150135 51..134 100 -> Plus
arm_X 6150194..6150749 135..691 99   Plus

BO18342.complete Sequence

1075 bp assembled on 2006-10-11

GenBank Submission: FJ634386

> BO18342.complete
GAAGTTATCAGTCGACATGGCGGCAGGTCCAATTGCTGAACGCAACCAAG
ATGCCACCATCTATGCCGGCGGTCTTGACGACAAGGTGTCGGAAACGCTG
CTTTGGGAGCTGTTTGTCCAGGCAGGACCAGTGGTGAACGTACACATGCC
CAAGGATCGTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCC
TCAGCGAGGAAGACGCCGACTATGGAATAAAGATCATGAACATGATCAAG
CTTTACGGCAAGCCCATTCGCGTGAACAAGGCGTCGGCGCATCAGAAGAA
CCTGGACGTCGGCGCCAACATCTTCATTGGCAACCTAGACGTGGAAGTGG
ACGAGAAGCTGCTGTACGATACGTTCTCCGCCTTCGGCGTTATACTGCAG
ACGCCGAAGATCATGCGAGACCCAGAGACGGGCAAGTCTAAGAGCTTTGC
GTTCATCAACTTTGCCAGCTTCGAGGCCAGCGATGCGGCCATGGACGCCA
TGAACGGCCAGTACCTGTGCAACCGTCCCATTTCCGTGTCCTATGCCTTC
AAGAAGGATCACAAGGGCGAGCGTCACGGTTCGGCTGCGGAGCGCCTGTT
GGCCGCCCAGAATCCATCGACCCATGCAGACCGGCCGCATCAATTGTTCG
CCGATGCACCGGTGCAAACCATGATGCCCCAGATGCCGGGCCAGATCCCG
GCCCAGATGCCGGGCCAGATGATGCCGCCACCCATGATGGCGCCGCCGCC
GCCGGTGGTGCCCGTTTCGAATAACAATATGGGCATGCTAGCACCGCCGC
CGCCCGTTCCCCAGCCTGCACCGTTCCCAGCTACGATACCGCCGCCTCCG
TTGCCACCGATGACCGGCGGACAGCCGCCGCTGCCGCCAGCAATGGGCAT
TCCGCCGCCGCCTCGCATGATGCAACCAAATGCATGGGCACCGCCCGGCA
TGCCTGCTCCTCCGCCCAGACCACCGCCCACCAACTGGCGTCCGCCGCCC
GTGCCCTTCCCACCCACGCCCTACGCACGGCCCTATCAACCCGACGGCTA
CCAGTACGCAAGCTTTCTAGACCAT

BO18342.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-RA 1044 CG3780-PA 1..1041 17..1057 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-RA 1643 CG3780-RA 86..1130 13..1057 5210 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6256160..6257083 134..1057 4620 100 Plus
X 23542271 X 6256017..6256102 49..134 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:25:39 has no hits.

BO18342.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:54 Download gff for BO18342.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 1..1044 17..1061 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:53 Download gff for BO18342.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 68..1128 7..1070 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:53 Download gff for BO18342.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 90..1130 17..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:54 Download gff for BO18342.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 68..1128 7..1070 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:10 Download gff for BO18342.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 90..1130 17..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:10 Download gff for BO18342.complete
Subject Subject Range Query Range Percent Splice Strand
X 6255911..6255944 17..50 100 -> Plus
X 6256019..6256102 51..134 100 -> Plus
X 6256161..6257083 135..1059 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:53 Download gff for BO18342.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6149944..6149977 17..50 100 -> Plus
arm_X 6150052..6150135 51..134 100 -> Plus
arm_X 6150194..6151116 135..1059 99   Plus

BO18342.pep Sequence

Translation from 16 to 1075

> BO18342.pep
MAAGPIAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVT
QMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGA
NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFA
SFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNP
STHADRPHQLFADAPVQTMMPQMPGQIPAQMPGQMMPPPMMAPPPPVVPV
SNNNMGMLAPPPPVPQPAPFPATIPPPPLPPMTGGQPPLPPAMGIPPPPR
MMQPNAWAPPGMPAPPPRPPPTNWRPPPVPFPPTPYARPYQPDGYQYASF
LDH

BO18342.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-PA 347 CG3780-PA 1..347 1..347 1896 100 Plus
Rb97D-PE 434 CG6354-PE 25..392 6..346 268 28.8 Plus
Rb97D-PD 434 CG6354-PD 25..392 6..346 268 28.8 Plus
Rb97D-PG 465 CG6354-PG 25..392 6..346 268 28.8 Plus
Rb97D-PC 465 CG6354-PC 25..392 6..346 268 28.8 Plus