Clone Sequence Records
BO18342.3prime Sequence
758 bp (661 high quality bases) assembled on 2006-10-13
> BO18342.3prime
ATGGTCTAGAAAGCTTGCGTACTGGTAGCCGTCGGGTTGATAGGGCCGTG
CGTAGGGCGTGGGTGGGAAGGGCACGGGCGGCGGACGCCAGTTGGTGGGC
GGTGGTCTGGGCGGAGGAGCAGGCATGCCGGGCGGTGCCCATGCATTTGG
TTGCATCATGCGAGGCGGCGGCGGAATGCCCATTGCTGGCGGCAGCGGCG
GCTGTCCGCCGGTCATCGGTGGCAACGGAGGCGGCGGTATCGTAGCTGGG
AACGGTGCAGGCTGGGGAACGGGCGGCGGCGGTGCTAGCATGCCCATATT
GTTATTCGAAACGGGCACCACCGGCGGCGGCGGCGCCATCATGGGTGGCG
GCATCATCTGGCCCGGCATCTGGGCCGGGATCTGGCCCGGCATCTGGGGC
ATCATGGTTTGCACCGGTGCATCGGCGAACAATTGATGCGGCCGGTCTGC
ATGGGTCGATGGATTCTGGGCGGCCAACAGGCGCTCCGCAGCCGAACCGT
GACGCTCGCCCTTGTGATCCTTCTTGAAGGCATAGGACACGGAAATGGGA
CGGTTGCACAGGTACTGGCCGTTCATGGCGTCCATGGCCGCATCGCTGGC
CTCGAAGCTGGCAAAGTTGATGAAACGCAAAGCTCTTAGACTTGCCCGTC
TTCTGGGTCTCGCATGATCTTCGGCGTCTGCAATATTACGCCGAAGGCGG
AAAACGTATCGTACAGCAGCTTCTCGTCCCCTTCCCCGTCTAGGTTGTCA
ATGAAGAT
BO18342.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3780-PA | 1044 | Spx-RA | 436..1041 | 624..19 | 3030 | 100 | Minus |
CG3780-PA | 1044 | Spx-RA | 304..410 | 758..652 | 385 | 94.3 | Minus |
CG3780-PA | 1044 | Spx-RA | 410..437 | 651..624 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-RA | 1643 | CG3780-RA | 393..1130 | 758..19 | 3560 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6256346..6257083 | 758..19 | 3510 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:56:49 has no hits.
BO18342.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:36 Download gff for
BO18342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3780-PA | 304..1044 | 15..758 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:21 Download gff for
BO18342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 393..1139 | 6..758 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:18 Download gff for
BO18342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 393..1139 | 6..758 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:18 Download gff for
BO18342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6256346..6257092 | 6..758 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:21 Download gff for
BO18342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6150379..6151125 | 6..758 | 98 | | Minus |
BO18342.5prime Sequence
691 bp (683 high quality bases) assembled on 2006-10-13
> BO18342.5prime
GAAGTTATCAGTCGACATGGCGGCAGGTCCAATTGCTGAACGCAACCAAG
ATGCCACCATCTATGCCGGCGGTCTTGACGACAAGGTGTCGGAAACGCTG
CTTTGGGAGCTGTTTGTCCAGGCAGGACCAGTGGTGAACGTACACATGCC
CAAGGATCGTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCC
TCAGCGAGGAAGACGCCGACTATGGAATAAAGATCATGAACATGATCAAG
CTTTACGGCAAGCCCATTCGCGTGAACAAGGCGTCGGCGCATCAGAAGAA
CCTGGACGTCGGCGCCAACATCTTCATTGGCAACCTAGACGTGGAAGTGG
ACGAGAAGCTGCTGTACGATACGTTCTCCGCCTTCGGCGTTATACTGCAG
ACGCCGAAGATCATGCGAGACCCAGAGACGGGCAAGTCTAAGAGCTTTGC
GTTCATCAACTTTGCCAGCTTCGAGGCCAGCGATGCGGCCATGGACGCCA
TGAACGGCCAGTACCTGTGCAACCGTCCCATTTCCGTGTCCTATGCCTTC
AAGAAGGATCACAAGGGCGAGCGTCACGGTTCGGCTGCGGAGCGCCTGTT
GGCCGCCCAGAATCCATCGACCCATGCAGACCGGCCGCATCAATTGTTCG
CCGATGCACCGGTGCAAACCATGATGCTCCAGATGCCGGGG
BO18342.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3780-PA | 1044 | Spx-RA | 1..674 | 17..690 | 3345 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-RA | 1643 | CG3780-RA | 86..763 | 13..690 | 3360 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6256160..6256716 | 134..690 | 2770 | 99.8 | Plus |
X | 23542271 | X | 6256017..6256102 | 49..134 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:47:49 has no hits.
BO18342.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:36 Download gff for
BO18342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3780-PA | 1..674 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:53 Download gff for
BO18342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 79..763 | 7..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:53 Download gff for
BO18342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 79..763 | 7..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:53 Download gff for
BO18342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6255900..6255944 | 7..50 | 91 | -> | Plus |
X | 6256019..6256102 | 51..134 | 100 | -> | Plus |
X | 6256161..6256716 | 135..691 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:53 Download gff for
BO18342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6149933..6149977 | 7..50 | 91 | -> | Plus |
arm_X | 6150052..6150135 | 51..134 | 100 | -> | Plus |
arm_X | 6150194..6150749 | 135..691 | 99 | | Plus |
BO18342.complete Sequence
1075 bp assembled on 2006-10-11
GenBank Submission: FJ634386
> BO18342.complete
GAAGTTATCAGTCGACATGGCGGCAGGTCCAATTGCTGAACGCAACCAAG
ATGCCACCATCTATGCCGGCGGTCTTGACGACAAGGTGTCGGAAACGCTG
CTTTGGGAGCTGTTTGTCCAGGCAGGACCAGTGGTGAACGTACACATGCC
CAAGGATCGTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCC
TCAGCGAGGAAGACGCCGACTATGGAATAAAGATCATGAACATGATCAAG
CTTTACGGCAAGCCCATTCGCGTGAACAAGGCGTCGGCGCATCAGAAGAA
CCTGGACGTCGGCGCCAACATCTTCATTGGCAACCTAGACGTGGAAGTGG
ACGAGAAGCTGCTGTACGATACGTTCTCCGCCTTCGGCGTTATACTGCAG
ACGCCGAAGATCATGCGAGACCCAGAGACGGGCAAGTCTAAGAGCTTTGC
GTTCATCAACTTTGCCAGCTTCGAGGCCAGCGATGCGGCCATGGACGCCA
TGAACGGCCAGTACCTGTGCAACCGTCCCATTTCCGTGTCCTATGCCTTC
AAGAAGGATCACAAGGGCGAGCGTCACGGTTCGGCTGCGGAGCGCCTGTT
GGCCGCCCAGAATCCATCGACCCATGCAGACCGGCCGCATCAATTGTTCG
CCGATGCACCGGTGCAAACCATGATGCCCCAGATGCCGGGCCAGATCCCG
GCCCAGATGCCGGGCCAGATGATGCCGCCACCCATGATGGCGCCGCCGCC
GCCGGTGGTGCCCGTTTCGAATAACAATATGGGCATGCTAGCACCGCCGC
CGCCCGTTCCCCAGCCTGCACCGTTCCCAGCTACGATACCGCCGCCTCCG
TTGCCACCGATGACCGGCGGACAGCCGCCGCTGCCGCCAGCAATGGGCAT
TCCGCCGCCGCCTCGCATGATGCAACCAAATGCATGGGCACCGCCCGGCA
TGCCTGCTCCTCCGCCCAGACCACCGCCCACCAACTGGCGTCCGCCGCCC
GTGCCCTTCCCACCCACGCCCTACGCACGGCCCTATCAACCCGACGGCTA
CCAGTACGCAAGCTTTCTAGACCAT
BO18342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-RA | 1044 | CG3780-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-RA | 1643 | CG3780-RA | 86..1130 | 13..1057 | 5210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6256160..6257083 | 134..1057 | 4620 | 100 | Plus |
X | 23542271 | X | 6256017..6256102 | 49..134 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:25:39 has no hits.
BO18342.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:54 Download gff for
BO18342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 1..1044 | 17..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:53 Download gff for
BO18342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 68..1128 | 7..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:53 Download gff for
BO18342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 90..1130 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:54 Download gff for
BO18342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 68..1128 | 7..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:10 Download gff for
BO18342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 90..1130 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:10 Download gff for
BO18342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6255911..6255944 | 17..50 | 100 | -> | Plus |
X | 6256019..6256102 | 51..134 | 100 | -> | Plus |
X | 6256161..6257083 | 135..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:53 Download gff for
BO18342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6149944..6149977 | 17..50 | 100 | -> | Plus |
arm_X | 6150052..6150135 | 51..134 | 100 | -> | Plus |
arm_X | 6150194..6151116 | 135..1059 | 99 | | Plus |
BO18342.pep Sequence
Translation from 16 to 1075
> BO18342.pep
MAAGPIAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVT
QMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGA
NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFA
SFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNP
STHADRPHQLFADAPVQTMMPQMPGQIPAQMPGQMMPPPMMAPPPPVVPV
SNNNMGMLAPPPPVPQPAPFPATIPPPPLPPMTGGQPPLPPAMGIPPPPR
MMQPNAWAPPGMPAPPPRPPPTNWRPPPVPFPPTPYARPYQPDGYQYASF
LDH
BO18342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-PA | 347 | CG3780-PA | 1..347 | 1..347 | 1896 | 100 | Plus |
Rb97D-PE | 434 | CG6354-PE | 25..392 | 6..346 | 268 | 28.8 | Plus |
Rb97D-PD | 434 | CG6354-PD | 25..392 | 6..346 | 268 | 28.8 | Plus |
Rb97D-PG | 465 | CG6354-PG | 25..392 | 6..346 | 268 | 28.8 | Plus |
Rb97D-PC | 465 | CG6354-PC | 25..392 | 6..346 | 268 | 28.8 | Plus |