Clone BO18346 Report

Search the DGRC for BO18346

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG32111-RA
Protein status:BO18346.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO18346.3prime Sequence

542 bp (542 high quality bases) assembled on 2006-10-13

> BO18346.3prime
ATGGTCTAGAAAGCTTGCCGGAGTCAAACCGAAGGTGGCCAAGAGGACGA
AGTACCCGGCATGGTCCTTCCATCGGTTTTCCACCCTCGCATAGGTACAA
CGCTGTCGACACCGCCCCCTGATAACAATCAACCCCGTGCGGCGGCATCG
GCGGGAGTTTACTTTAATGTTTTGACAGTAAAATAAACATATCCAAGTGC
GGCTCTCATCAGACGCGAGTGTAGGTGGGTGGGTGCATGGATAACTGGGT
GGTTTTTTGGTGCGCATGCACACGTATGTATTTGTAGTTTGAGTGGCATC
AAATGTGGCAGGGTACACACATGTTAGCAACGACGGAGCAGGAGGAGGAG
GACCGCCGCCCAAGCACATAGATGTCAAATATAATTCATCATCCTGGCGA
AACATCAAAGCCAGCCACTGCATGGACCAAGGACCGAGGACCAAGGACCC
AGTAACAAGGACCAAGGACCAAAGACCTGGGCACAAGGCTACCGGCATGA
GCAAACACAAAGTCGCCAACAGCATCATGTCGACTGATAACT

BO18346.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32111-PA 513 CG32111-RA 1..510 528..19 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-03 06:41:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12642154..12642663 528..19 2550 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:41:13 has no hits.

BO18346.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:40 Download gff for BO18346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32111-PA 1..513 18..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:30 Download gff for BO18346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1199..1708 19..528 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:40 Download gff for BO18346.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642663 19..528 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:40 Download gff for BO18346.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642663 19..528 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:30 Download gff for BO18346.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12635254..12635763 19..528 100   Minus

BO18346.5prime Sequence

542 bp (542 high quality bases) assembled on 2006-10-13

> BO18346.5prime
GAAGTTATCAGTCGACATGATGCTGTTGGCGACTTTGTGTTTGCTCATGC
CGGTAGCCTTGTGCCCAGGTCTTTGGTCCTTGGTCCTTGTTACTGGGTCC
TTGGTCCTCGGTCCTTGGTCCATGCAGTGGCTGGCTTTGATGTTTCGCCA
GGATGATGAATTATATTTGACATCTATGTGCTTGGGCGGCGGTCCTCCTC
CTCCTGCTCCGTCGTTGCTAACATGTGTGTACCCTGCCACATTTGATGCC
ACTCAAACTACAAATACATACGTGTGCATGCGCACCAAAAAACCACCCAG
TTATCCATGCACCCACCCACCTACACTCGCGTCTGATGAGAGCCGCACTT
GGATATGTTTATTTTACTGTCAAAACATTAAAGTAAACTCCCGCCGATGC
CGCCGCACGGGGTTGATTGTTATCAGGGGGCGGTGTCGACAGCGTTGTAC
CTATGCGAGGGTGGAAAACCGATGGAAGGACCATGCCGGGTACTTCGTCC
TCTTGGCCACCTTCGGTTTGACTCCGGCAAGCTTTCTAGACC

BO18346.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32111-PA 513 CG32111-RA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 17:40:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12642154..12642663 17..526 2550 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:40:28 has no hits.

BO18346.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:40 Download gff for BO18346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32111-PA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:09 Download gff for BO18346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1199..1708 17..526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:09 Download gff for BO18346.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642663 17..526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:09 Download gff for BO18346.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642663 17..526 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:09 Download gff for BO18346.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12635254..12635763 17..526 100   Plus

BO18346.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ634387

> BO18346.complete
GAAGTTATCAGTCGACATGATGCTGTTGGCGACTTTGTGTTTGCTCATGC
CGGTAGCCTTGTGCCCAGGTCTTTGGTCCTTGGTCCTTGTTACTGGGTCC
TTGGTCCTCGGTCCTTGGTCCATGCAGTGGCTGGCTTTGATGTTTCGCCA
GGATGATGAATTATATTTGACATCTATGTGCTTGGGCGGCGGTCCTCCTC
CTCCTGCTCCGTCGTTGCTAACATGTGTGTACCCTGCCACATTTGATGCC
ACTCAAACTACAAATACATACGTGTGCATGCGCACCAAAAAACCACCCAG
TTATCCATGCACCCACCCACCTACACTCGCGTCTGATGAGAGCCGCACTT
GGATATGTTTATTTTACTGTCAAAACATTAAAGTAAACTCCCGCCGATGC
CGCCGCACGGGGTTGATTGTTATCAGGGGGCGGTGTCGACAGCGTTGTAC
CTATGCGAGGGTGGAAAACCGATGGAAGGACCATGCCGGGTACTTCGTCC
TCTTGGCCACCTTCGGTTTGACTCCGGCAAGCTTTCTAGACCAT

BO18346.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:39:14 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 16:39:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12642154..12642663 17..526 2550 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:39:13 has no hits.

BO18346.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:55 Download gff for BO18346.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:54 Download gff for BO18346.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1197..1706 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:58 Download gff for BO18346.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1199..1708 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:55 Download gff for BO18346.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1197..1706 17..526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:34 Download gff for BO18346.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642663 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:34 Download gff for BO18346.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12642154..12642663 17..528 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:58 Download gff for BO18346.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12635254..12635763 17..528 99   Plus

BO18346.pep Sequence

Translation from 16 to 544

> BO18346.pep
MMLLATLCLLMPVALCPGLWSLVLVTGSLVLGPWSMQWLALMFRQDDELY
LTSMCLGGGPPPPAPSLLTCVYPATFDATQTTNTYVCMRTKKPPSYPCTH
PPTLASDESRTWICLFYCQNIKVNSRRCRRTGLIVIRGRCRQRCTYARVE
NRWKDHAGYFVLLATFGLTPASFLDH
Sequence BO18346.pep has no blast hits.