Clone BO18355 Report

Search the DGRC for BO18355

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptSu(var)2-10-RF
Protein status:BO18355.pep: validated full length
Sequenced Size:1633

Clone Sequence Records

BO18355.3prime Sequence

709 bp (582 high quality bases) assembled on 2006-10-13

> BO18355.3prime
ATGGTCTAGAAAGCTTGCTTGCAAAAAGGGATCCAACGTACCGGATTGCT
GGGGCTGCTGTGCCGGGGTATAGGCACGTTGGCCGCCACCGCTGCCGTTC
GACGTGGAACTGGCGACGGCTTGCTTGGCGGGCGGACGACGCTTAGCCAG
CGGCATGTCGTCGTCTGAATCGCTTAACGTTAGGTCAACAGTTTCACTGT
TTGACGTTGATGTGGGCTGTTCGTCCTGTGCTGGGGACAAATCCCTCTTT
ACTGGCTTGGCGTCATCCGAGATAAGTTCTATGTCATCCGATATAACCTC
AACCTTTTGGGCGGGCTTTGAAGGCGTATCAAGGATCTGCGTCTCGCTCC
GTAGTCCTGGTGTGCTCCAAGATCCATCCTGATGAAGTTGAATCTCAGTA
TCATCACTCTTTAGAAGCGACGAGCCCAACACCTCCTGGAAGTAGCCATC
TATGACCAGGTTGTCATAAATGGCCGGCTTGTCGCATACAGGGCAGTTCC
ACGTGGGCTTACGCTCATTCATTTGCAGGTAGAGACTGGCATCGAAGCAT
TGCAGATGCGAGCAGGTTGATGCTCGACAAGGCAGCAACATTTTCATCTT
GCCCAACGGGCAGTTAAGGGAAACCTTCACCATAGTGGTGGCTATTTCGC
AGTCAGCATCCTCAGTCAGCTTCTCTTTTGATTTAGCCTCGCGTGTTATC
CGCTGGTTT

BO18355.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PH 1710 Su(var)2-10-RH 1018..1707 709..19 3315 99.2 Minus
CG8068-PF 1602 Su(var)2-10-RF 910..1599 709..19 3315 99.2 Minus
CG8068-PE 1569 Su(var)2-10-RE 877..1566 709..19 3315 99.2 Minus
CG8068-PD 1806 Su(var)2-10-RD 1018..1686 709..40 3210 99.2 Minus
CG8068-PC 1698 Su(var)2-10-RC 910..1578 709..40 3210 99.2 Minus
CG8068-PA 1665 Su(var)2-10-RA 877..1545 709..40 3210 99.2 Minus
CG8068-PG 1815 Su(var)2-10-RG 910..1576 709..42 3200 99.2 Minus
CG8068-PB 1782 Su(var)2-10-RB 877..1543 709..42 3200 99.2 Minus
CG8068-PI 1923 Su(var)2-10-RI 1018..1684 709..42 3200 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RE 2847 CG8068-RE 1123..1812 709..19 3370 99.3 Minus
Su(var)2-10-RF 2548 CG8068-RF 1449..2138 709..19 3370 99.3 Minus
Su(var)2-10-RH 2943 CG8068-RH 1219..1908 709..19 3370 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9118217..9118449 678..446 1150 99.6 Minus
2R 25286936 2R 9118900..9119070 189..19 855 100 Minus
2R 25286936 2R 9118505..9118672 446..279 840 100 Minus
2R 25286936 2R 9118737..9118829 280..188 465 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:43:19 has no hits.

BO18355.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:42 Download gff for BO18355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PH 1018..1710 15..709 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:28:38 Download gff for BO18355.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 1219..1913 13..709 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:45 Download gff for BO18355.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 1219..1913 13..709 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:45 Download gff for BO18355.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9118215..9118449 446..681 99 -> Minus
2R 9118506..9118672 279..445 100 -> Minus
2R 9118739..9118827 190..278 100 -> Minus
2R 9118900..9119075 13..189 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:28:38 Download gff for BO18355.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5006405..5006580 13..189 98   Minus
arm_2R 5005720..5005954 446..681 99 -> Minus
arm_2R 5006011..5006177 279..445 100 -> Minus
arm_2R 5006244..5006332 190..278 100 -> Minus

BO18355.5prime Sequence

746 bp (720 high quality bases) assembled on 2006-10-13

> BO18355.5prime
GAAGTTATCAGTCGACATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCC
ACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCA
CGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACC
AGAAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTC
TGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGC

BO18355.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PC 1698 Su(var)2-10-RC 1..730 17..746 3625 99.8 Plus
CG8068-PF 1602 Su(var)2-10-RF 1..730 17..746 3625 99.8 Plus
CG8068-PG 1815 Su(var)2-10-RG 1..730 17..746 3625 99.8 Plus
CG8068-PH 1710 Su(var)2-10-RH 128..838 36..746 3530 99.8 Plus
CG8068-PD 1806 Su(var)2-10-RD 128..838 36..746 3530 99.8 Plus
CG8068-PI 1923 Su(var)2-10-RI 128..838 36..746 3530 99.8 Plus
CG8068-PE 1569 Su(var)2-10-RE 1..697 50..746 3460 99.8 Plus
CG8068-PB 1782 Su(var)2-10-RB 1..697 50..746 3460 99.8 Plus
CG8068-PA 1665 Su(var)2-10-RA 1..697 50..746 3460 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RK 2632 CG8068-RK 535..1269 12..746 3645 99.7 Plus
Su(var)2-10-RG 2632 CG8068-RG 535..1269 12..746 3645 99.7 Plus
Su(var)2-10-RF 2548 CG8068-RF 535..1269 12..746 3645 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117152..9117852 12..712 3475 99.7 Plus
Blast to na_te.dros performed on 2015-02-13 01:20:22 has no hits.

BO18355.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:43 Download gff for BO18355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PC 1..730 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:43:52 Download gff for BO18355.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 530..1269 7..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:02 Download gff for BO18355.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 530..1269 7..746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:02 Download gff for BO18355.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9117917..9117950 713..746 100   Plus
2R 9117147..9117852 7..712 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:43:52 Download gff for BO18355.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5004652..5005357 7..712 99 -> Plus
arm_2R 5005422..5005455 713..746 100   Plus

BO18355.complete Sequence

1633 bp assembled on 2007-03-23

GenBank Submission: FJ634388

> BO18355.complete
GAAGTTATCAGTCGACATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCC
ACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCA
CGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACC
AGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTC
TGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGCCCAA
GCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGCTGTCGCCTA
CCGTCACCAACACCATAACGGTTCAGTGGTGTCCGGACTACACTCGTAGC
TACTGTCTGGCCGTATACCTGGTAAAGAAGCTCACCTCAACACAGCTTTT
GCAGCGAATGAAGACGAAGGGCGTAAAACCAGCGGACTACACGCGAGGCT
TAATCAAAGAGAAGCTGACTGAGGATGCTGACTGCGAAATAGCCACCACT
ATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGCAAGATGAAAATGTTGCT
GCCTTGTCGAGCATCAACCTGCTCGCATCTGCAATGCTTCGATGCCAGTC
TCTACCTGCAAATGAATGAGCGTAAGCCCACGTGGAACTGCCCTGTATGC
GACAAGCCGGCCATTTATGACAACCTGGTCATAGATGGCTACTTCCAGGA
GGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGATACTGAGATTCAACTTC
ATCAGGATGGATCTTGGAGCACACCAGGACTACGGAGCGAGACGCAGATC
CTTGATACGCCTTCAAAGCCCGCCCAAAAGGTTGAGGTTATATCGGATGA
CATAGAACTTATCTCGGATGACGCCAAGCCAGTAAAGAGGGATTTGTCCC
CAGCACAGGACGAACAGCCCACATCAACGTCAAACAGTGAAACTGTTGAC
CTAACGTTAAGCGATTCAGACGACGACATGCCGCTGGCTAAGCGTCGTCC
GCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTCGAACGGCAGCGGTGGCG
GCCAACGTGCCTATACCCCGGCACAGCAGCCCCAGCAATCCGGTACGTTG
GATCCCTTTTTGCAAGCAAGCTTTCTAGACCAT

BO18355.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RF 1602 CG8068-PF 1..1599 17..1615 7995 100 Plus
Su(var)2-10-RH 1710 CG8068-PH 128..1707 36..1615 7900 100 Plus
Su(var)2-10-RC 1698 CG8068-PC 1..1578 17..1594 7890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RF 2548 CG8068-RF 535..2138 12..1615 8005 99.9 Plus
Su(var)2-10-RE 2847 CG8068-RE 233..1812 36..1615 7900 100 Plus
Su(var)2-10-RC 2389 CG8068-RC 535..2117 12..1594 7900 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117152..9117852 12..712 3490 99.9 Plus
2R 25286936 2R 9117917..9118157 713..953 1205 100 Plus
2R 25286936 2R 9118215..9118449 954..1188 1175 100 Plus
2R 25286936 2R 9118900..9119070 1445..1615 855 100 Plus
2R 25286936 2R 9118505..9118672 1188..1355 840 100 Plus
2R 25286936 2R 9118737..9118829 1354..1446 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:24:23 has no hits.

BO18355.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:16 Download gff for BO18355.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 1..1602 17..1619 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:19 Download gff for BO18355.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 561..2174 7..1621 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:34 Download gff for BO18355.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 540..2138 17..1617 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:16 Download gff for BO18355.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 561..2174 7..1621 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:53 Download gff for BO18355.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 540..2138 17..1617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:53 Download gff for BO18355.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9118215..9118449 954..1188 100 -> Plus
2R 9118506..9118672 1189..1355 100 -> Plus
2R 9118739..9118827 1356..1444 100 -> Plus
2R 9118900..9119070 1445..1617 98   Plus
2R 9117157..9117852 17..712 100 -> Plus
2R 9117917..9118157 713..953 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:34 Download gff for BO18355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5004662..5005357 17..712 100 -> Plus
arm_2R 5005422..5005662 713..953 100 -> Plus
arm_2R 5005720..5005954 954..1188 100 -> Plus
arm_2R 5006011..5006177 1189..1355 100 -> Plus
arm_2R 5006244..5006332 1356..1444 100 -> Plus
arm_2R 5006405..5006575 1445..1617 98   Plus

BO18355.pep Sequence

Translation from 16 to 1633

> BO18355.pep
MPFPSLQECEQMVQMLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTN
LELLAPKVQEVYAQSVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVG
SGQGVQVPGGQMNVVGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTL
IKPSTLVPRNTQRVQEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQ
LRFCLVETSCDQEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRP
VNVTSNVKLSPTVTNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKT
KGVKPADYTRGLIKEKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRAS
TCSHLQCFDASLYLQMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSS
LLKSDDTEIQLHQDGSWSTPGLRSETQILDTPSKPAQKVEVISDDIELIS
DDAKPVKRDLSPAQDEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQA
VASSTSNGSGGGQRAYTPAQQPQQSGTLDPFLQASFLDH

BO18355.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-PF 533 CG8068-PF 1..533 1..533 2778 100 Plus
Su(var)2-10-PH 569 CG8068-PH 36..569 2..533 2743 99.1 Plus
Su(var)2-10-PC 565 CG8068-PC 1..526 1..526 2741 100 Plus
Su(var)2-10-PG 604 CG8068-PG 1..533 1..535 2736 98.9 Plus
Su(var)2-10-PK 537 CG8068-PK 1..525 1..525 2735 100 Plus