Clone Sequence Records
BO18355.3prime Sequence
709 bp (582 high quality bases) assembled on 2006-10-13
> BO18355.3prime
ATGGTCTAGAAAGCTTGCTTGCAAAAAGGGATCCAACGTACCGGATTGCT
GGGGCTGCTGTGCCGGGGTATAGGCACGTTGGCCGCCACCGCTGCCGTTC
GACGTGGAACTGGCGACGGCTTGCTTGGCGGGCGGACGACGCTTAGCCAG
CGGCATGTCGTCGTCTGAATCGCTTAACGTTAGGTCAACAGTTTCACTGT
TTGACGTTGATGTGGGCTGTTCGTCCTGTGCTGGGGACAAATCCCTCTTT
ACTGGCTTGGCGTCATCCGAGATAAGTTCTATGTCATCCGATATAACCTC
AACCTTTTGGGCGGGCTTTGAAGGCGTATCAAGGATCTGCGTCTCGCTCC
GTAGTCCTGGTGTGCTCCAAGATCCATCCTGATGAAGTTGAATCTCAGTA
TCATCACTCTTTAGAAGCGACGAGCCCAACACCTCCTGGAAGTAGCCATC
TATGACCAGGTTGTCATAAATGGCCGGCTTGTCGCATACAGGGCAGTTCC
ACGTGGGCTTACGCTCATTCATTTGCAGGTAGAGACTGGCATCGAAGCAT
TGCAGATGCGAGCAGGTTGATGCTCGACAAGGCAGCAACATTTTCATCTT
GCCCAACGGGCAGTTAAGGGAAACCTTCACCATAGTGGTGGCTATTTCGC
AGTCAGCATCCTCAGTCAGCTTCTCTTTTGATTTAGCCTCGCGTGTTATC
CGCTGGTTT
BO18355.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8068-PH | 1710 | Su(var)2-10-RH | 1018..1707 | 709..19 | 3315 | 99.2 | Minus |
CG8068-PF | 1602 | Su(var)2-10-RF | 910..1599 | 709..19 | 3315 | 99.2 | Minus |
CG8068-PE | 1569 | Su(var)2-10-RE | 877..1566 | 709..19 | 3315 | 99.2 | Minus |
CG8068-PD | 1806 | Su(var)2-10-RD | 1018..1686 | 709..40 | 3210 | 99.2 | Minus |
CG8068-PC | 1698 | Su(var)2-10-RC | 910..1578 | 709..40 | 3210 | 99.2 | Minus |
CG8068-PA | 1665 | Su(var)2-10-RA | 877..1545 | 709..40 | 3210 | 99.2 | Minus |
CG8068-PG | 1815 | Su(var)2-10-RG | 910..1576 | 709..42 | 3200 | 99.2 | Minus |
CG8068-PB | 1782 | Su(var)2-10-RB | 877..1543 | 709..42 | 3200 | 99.2 | Minus |
CG8068-PI | 1923 | Su(var)2-10-RI | 1018..1684 | 709..42 | 3200 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RE | 2847 | CG8068-RE | 1123..1812 | 709..19 | 3370 | 99.3 | Minus |
Su(var)2-10-RF | 2548 | CG8068-RF | 1449..2138 | 709..19 | 3370 | 99.3 | Minus |
Su(var)2-10-RH | 2943 | CG8068-RH | 1219..1908 | 709..19 | 3370 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9118217..9118449 | 678..446 | 1150 | 99.6 | Minus |
2R | 25286936 | 2R | 9118900..9119070 | 189..19 | 855 | 100 | Minus |
2R | 25286936 | 2R | 9118505..9118672 | 446..279 | 840 | 100 | Minus |
2R | 25286936 | 2R | 9118737..9118829 | 280..188 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:43:19 has no hits.
BO18355.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:42 Download gff for
BO18355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PH | 1018..1710 | 15..709 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:28:38 Download gff for
BO18355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 1219..1913 | 13..709 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:45 Download gff for
BO18355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 1219..1913 | 13..709 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:45 Download gff for
BO18355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9118215..9118449 | 446..681 | 99 | -> | Minus |
2R | 9118506..9118672 | 279..445 | 100 | -> | Minus |
2R | 9118739..9118827 | 190..278 | 100 | -> | Minus |
2R | 9118900..9119075 | 13..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:28:38 Download gff for
BO18355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5006405..5006580 | 13..189 | 98 | | Minus |
arm_2R | 5005720..5005954 | 446..681 | 99 | -> | Minus |
arm_2R | 5006011..5006177 | 279..445 | 100 | -> | Minus |
arm_2R | 5006244..5006332 | 190..278 | 100 | -> | Minus |
BO18355.5prime Sequence
746 bp (720 high quality bases) assembled on 2006-10-13
> BO18355.5prime
GAAGTTATCAGTCGACATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCC
ACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCA
CGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACC
AGAAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTC
TGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGC
BO18355.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8068-PC | 1698 | Su(var)2-10-RC | 1..730 | 17..746 | 3625 | 99.8 | Plus |
CG8068-PF | 1602 | Su(var)2-10-RF | 1..730 | 17..746 | 3625 | 99.8 | Plus |
CG8068-PG | 1815 | Su(var)2-10-RG | 1..730 | 17..746 | 3625 | 99.8 | Plus |
CG8068-PH | 1710 | Su(var)2-10-RH | 128..838 | 36..746 | 3530 | 99.8 | Plus |
CG8068-PD | 1806 | Su(var)2-10-RD | 128..838 | 36..746 | 3530 | 99.8 | Plus |
CG8068-PI | 1923 | Su(var)2-10-RI | 128..838 | 36..746 | 3530 | 99.8 | Plus |
CG8068-PE | 1569 | Su(var)2-10-RE | 1..697 | 50..746 | 3460 | 99.8 | Plus |
CG8068-PB | 1782 | Su(var)2-10-RB | 1..697 | 50..746 | 3460 | 99.8 | Plus |
CG8068-PA | 1665 | Su(var)2-10-RA | 1..697 | 50..746 | 3460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RK | 2632 | CG8068-RK | 535..1269 | 12..746 | 3645 | 99.7 | Plus |
Su(var)2-10-RG | 2632 | CG8068-RG | 535..1269 | 12..746 | 3645 | 99.7 | Plus |
Su(var)2-10-RF | 2548 | CG8068-RF | 535..1269 | 12..746 | 3645 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9117152..9117852 | 12..712 | 3475 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:20:22 has no hits.
BO18355.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:43 Download gff for
BO18355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PC | 1..730 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:43:52 Download gff for
BO18355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 530..1269 | 7..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:02 Download gff for
BO18355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 530..1269 | 7..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:02 Download gff for
BO18355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9117917..9117950 | 713..746 | 100 | | Plus |
2R | 9117147..9117852 | 7..712 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:43:52 Download gff for
BO18355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5004652..5005357 | 7..712 | 99 | -> | Plus |
arm_2R | 5005422..5005455 | 713..746 | 100 | | Plus |
BO18355.complete Sequence
1633 bp assembled on 2007-03-23
GenBank Submission: FJ634388
> BO18355.complete
GAAGTTATCAGTCGACATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCC
ACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCA
CGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACC
AGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTC
TGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGCCCAA
GCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGCTGTCGCCTA
CCGTCACCAACACCATAACGGTTCAGTGGTGTCCGGACTACACTCGTAGC
TACTGTCTGGCCGTATACCTGGTAAAGAAGCTCACCTCAACACAGCTTTT
GCAGCGAATGAAGACGAAGGGCGTAAAACCAGCGGACTACACGCGAGGCT
TAATCAAAGAGAAGCTGACTGAGGATGCTGACTGCGAAATAGCCACCACT
ATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGCAAGATGAAAATGTTGCT
GCCTTGTCGAGCATCAACCTGCTCGCATCTGCAATGCTTCGATGCCAGTC
TCTACCTGCAAATGAATGAGCGTAAGCCCACGTGGAACTGCCCTGTATGC
GACAAGCCGGCCATTTATGACAACCTGGTCATAGATGGCTACTTCCAGGA
GGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGATACTGAGATTCAACTTC
ATCAGGATGGATCTTGGAGCACACCAGGACTACGGAGCGAGACGCAGATC
CTTGATACGCCTTCAAAGCCCGCCCAAAAGGTTGAGGTTATATCGGATGA
CATAGAACTTATCTCGGATGACGCCAAGCCAGTAAAGAGGGATTTGTCCC
CAGCACAGGACGAACAGCCCACATCAACGTCAAACAGTGAAACTGTTGAC
CTAACGTTAAGCGATTCAGACGACGACATGCCGCTGGCTAAGCGTCGTCC
GCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTCGAACGGCAGCGGTGGCG
GCCAACGTGCCTATACCCCGGCACAGCAGCCCCAGCAATCCGGTACGTTG
GATCCCTTTTTGCAAGCAAGCTTTCTAGACCAT
BO18355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RF | 1602 | CG8068-PF | 1..1599 | 17..1615 | 7995 | 100 | Plus |
Su(var)2-10-RH | 1710 | CG8068-PH | 128..1707 | 36..1615 | 7900 | 100 | Plus |
Su(var)2-10-RC | 1698 | CG8068-PC | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RF | 2548 | CG8068-RF | 535..2138 | 12..1615 | 8005 | 99.9 | Plus |
Su(var)2-10-RE | 2847 | CG8068-RE | 233..1812 | 36..1615 | 7900 | 100 | Plus |
Su(var)2-10-RC | 2389 | CG8068-RC | 535..2117 | 12..1594 | 7900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9117152..9117852 | 12..712 | 3490 | 99.9 | Plus |
2R | 25286936 | 2R | 9117917..9118157 | 713..953 | 1205 | 100 | Plus |
2R | 25286936 | 2R | 9118215..9118449 | 954..1188 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 9118900..9119070 | 1445..1615 | 855 | 100 | Plus |
2R | 25286936 | 2R | 9118505..9118672 | 1188..1355 | 840 | 100 | Plus |
2R | 25286936 | 2R | 9118737..9118829 | 1354..1446 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:24:23 has no hits.
BO18355.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:16 Download gff for
BO18355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 1..1602 | 17..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:19 Download gff for
BO18355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 561..2174 | 7..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:34 Download gff for
BO18355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 540..2138 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:16 Download gff for
BO18355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 561..2174 | 7..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:53 Download gff for
BO18355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 540..2138 | 17..1617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:53 Download gff for
BO18355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9118215..9118449 | 954..1188 | 100 | -> | Plus |
2R | 9118506..9118672 | 1189..1355 | 100 | -> | Plus |
2R | 9118739..9118827 | 1356..1444 | 100 | -> | Plus |
2R | 9118900..9119070 | 1445..1617 | 98 | | Plus |
2R | 9117157..9117852 | 17..712 | 100 | -> | Plus |
2R | 9117917..9118157 | 713..953 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:34 Download gff for
BO18355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5004662..5005357 | 17..712 | 100 | -> | Plus |
arm_2R | 5005422..5005662 | 713..953 | 100 | -> | Plus |
arm_2R | 5005720..5005954 | 954..1188 | 100 | -> | Plus |
arm_2R | 5006011..5006177 | 1189..1355 | 100 | -> | Plus |
arm_2R | 5006244..5006332 | 1356..1444 | 100 | -> | Plus |
arm_2R | 5006405..5006575 | 1445..1617 | 98 | | Plus |
BO18355.pep Sequence
Translation from 16 to 1633
> BO18355.pep
MPFPSLQECEQMVQMLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTN
LELLAPKVQEVYAQSVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVG
SGQGVQVPGGQMNVVGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTL
IKPSTLVPRNTQRVQEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQ
LRFCLVETSCDQEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRP
VNVTSNVKLSPTVTNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKT
KGVKPADYTRGLIKEKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRAS
TCSHLQCFDASLYLQMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSS
LLKSDDTEIQLHQDGSWSTPGLRSETQILDTPSKPAQKVEVISDDIELIS
DDAKPVKRDLSPAQDEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQA
VASSTSNGSGGGQRAYTPAQQPQQSGTLDPFLQASFLDH
BO18355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-PF | 533 | CG8068-PF | 1..533 | 1..533 | 2778 | 100 | Plus |
Su(var)2-10-PH | 569 | CG8068-PH | 36..569 | 2..533 | 2743 | 99.1 | Plus |
Su(var)2-10-PC | 565 | CG8068-PC | 1..526 | 1..526 | 2741 | 100 | Plus |
Su(var)2-10-PG | 604 | CG8068-PG | 1..533 | 1..535 | 2736 | 98.9 | Plus |
Su(var)2-10-PK | 537 | CG8068-PK | 1..525 | 1..525 | 2735 | 100 | Plus |