Clone Sequence Records
BO18356.3prime Sequence
778 bp (690 high quality bases) assembled on 2006-10-13
> BO18356.3prime
ATGGTCTAGAAAGCTTGCGCCGAAAATGTGCTGGGTGCCCGGAGGCACCT
TGTAGCTGGGATAGCCATTGTTCAACTGGTGCTTGGCAAAGAAGGGTGTG
TAGTCCCGGTTAACTCTCCTGGGACGGCAGACGGGACCCAACGCCAACTG
GCGTCGTTCCTCGTTCTCGCGAGCCGCGGCCTCCTTGTACTCCGGTGGTG
GCCATTTCAAATCTCCGCGCAATTTGCTGCCTCCCTGATAACTGACGGCG
GCTGGCTGCGAAGTGTAGACTGGTGCAGGCTTCTGGCTGACTGGAGCCTC
CTTGCGCAGGGTGATGATGCCGGGACTGGCGCCCCGGTAGCTATCCTGGC
CAGCGTAGGCTCCCGGATACTGCTGCTGCTGCTGTTGTTGCTGCTGCTGC
AGATCAGTCTGATCCTGCGAGTAGGGCAACTGGGGCTGCGAATAAGAATT
GTATGGGGGTTGAGCATAGGTCGAGCCACCATTTTGCTGTGGGTAATAGG
ATGGCTGTTGCTGTTGCTGCTGTTGGTACGGTGAAGCCTGGTACGATGGC
TGCTGCTGCTGCTGCTGCGGCTGGTTCCACTGTGGTGGCTGATAGGGCGC
CTGAGCCTGCGATTGAGGCTGATACTGCTGCTGCGGAACCTGCTGCTGCT
GCTGTTGCTGTTGCCACTGTGCTCCAGGCTGCTGGCCATCGTAAGACGGA
ACACCGTACTGCTGCTGCGGCTGCTGTTGTTGCTGCTGGTAGGATCCCTG
AAACGGGGGATAGGCTCCATTGCCGGCG
BO18356.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33205-PB | 1506 | CG33205-RB | 744..1503 | 778..19 | 3750 | 99.7 | Minus |
| CG33205-PC | 1506 | CG33205-RC | 744..1503 | 778..19 | 3750 | 99.7 | Minus |
| CG33205-PA | 1389 | CG33205-RA | 627..1386 | 778..19 | 3750 | 99.7 | Minus |
| CG33205-PH | 1068 | CG33205-RH | 366..1065 | 718..19 | 3475 | 99.8 | Minus |
| CG33205-PE | 948 | CG33205-RE | 247..945 | 717..19 | 3470 | 99.8 | Minus |
| CG33205-PF | 1065 | CG33205-RF | 364..1062 | 717..19 | 3470 | 99.8 | Minus |
| CG33205-PG | 1065 | CG33205-RG | 364..1062 | 717..19 | 3470 | 99.8 | Minus |
| CG33205-PI | 621 | CG33205-RI | 199..618 | 438..19 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RR | 3268 | CG43897-RR | 1178..1937 | 778..19 | 3770 | 99.7 | Minus |
| CG43897-RJ | 3076 | CG43897-RJ | 986..1745 | 778..19 | 3770 | 99.7 | Minus |
| CG43897-RA | 2956 | CG43897-RA | 866..1625 | 778..19 | 3770 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832195..9832680 | 718..233 | 2415 | 99.8 | Minus |
| 3L | 28110227 | 3L | 9832738..9832867 | 234..105 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 9832927..9833014 | 106..19 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 9831377..9831440 | 778..715 | 305 | 98.4 | Minus |
Blast to na_te.dros performed 2015-02-13 16:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7078 | 741..370 | 310 | 57.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6923 | 740..555 | 284 | 62.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2662 | 740..371 | 275 | 55.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7009 | 740..502 | 272 | 59.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2673 | 740..378 | 225 | 57 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2395..2930 | 740..224 | 223 | 56.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..3034 | 740..506 | 207 | 58.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..7054 | 740..484 | 199 | 58.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2548 | 740..536 | 198 | 59.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2837 | 738..370 | 194 | 56.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..7077 | 740..485 | 187 | 57.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..2905 | 740..482 | 164 | 57.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1163 | 737..645 | 141 | 64.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1146 | 740..707 | 134 | 88.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2718..2826 | 614..504 | 126 | 61.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 742..711 | 124 | 87.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1567 | 738..710 | 118 | 89.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1546 | 739..710 | 114 | 86.7 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 151..176 | 742..717 | 112 | 92.3 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9181..9206 | 742..717 | 112 | 92.3 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 990..1020 | 741..711 | 110 | 83.9 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7962..7997 | 740..705 | 108 | 77.8 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9406..9441 | 740..705 | 108 | 77.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6882..6915 | 740..707 | 107 | 79.4 | Minus |
BO18356.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:43 Download gff for
BO18356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-PA | 627..1389 | 15..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:42:16 Download gff for
BO18356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RA | 866..1632 | 10..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:27 Download gff for
BO18356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RA | 866..1632 | 10..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:27 Download gff for
BO18356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9832928..9833021 | 10..105 | 96 | | Minus |
| 3L | 9831377..9831440 | 715..778 | 98 | -> | Minus |
| 3L | 9832199..9832679 | 234..714 | 99 | -> | Minus |
| 3L | 9832739..9832866 | 106..233 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:42:16 Download gff for
BO18356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9824477..9824540 | 715..778 | 98 | -> | Minus |
| arm_3L | 9825299..9825779 | 234..714 | 99 | -> | Minus |
| arm_3L | 9825839..9825966 | 106..233 | 100 | -> | Minus |
| arm_3L | 9826028..9826121 | 10..105 | 96 | | Minus |
BO18356.5prime Sequence
764 bp (747 high quality bases) assembled on 2006-10-13
> BO18356.5prime
GAAGTTATCAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGGGTCCCATTTATAACAAC
GTCCAGCCACGCACCACCCAAACACCACAAAATGCCTACCCATCGGCACC
ACAAACCACCAGCACCGCCTACCCCACCAACCAGTACCCAGATAGTTATT
CGCATCAGGAGCAGCAGCAGCAACAGCAGCAACAGCAGCCTGTGCAGTAC
ACACAGGCGCAGTTCGGTCGGCAACGCTCGAGGGAACCCGTCCAGGTTTC
AGCTCCATCTCCAGCTCCCGCAACCGATCCCAGCGGTTATCCATACCAGG
CTAACTATCAGTCCAACTATCCGCAGGAGCCGCTGCAGGCAGTGAACAAT
GTGGGTGGTGGCTGGAAACACATTGGTGCTCCGCAGCCTAAGTCACGCAG
TGAATTCACCGCCG
BO18356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33205-PB | 1506 | CG33205-RB | 1..748 | 17..764 | 3740 | 100 | Plus |
| CG33205-PC | 1506 | CG33205-RC | 1..748 | 17..764 | 3740 | 100 | Plus |
| CG33205-PA | 1389 | CG33205-RA | 3..631 | 136..764 | 3145 | 100 | Plus |
| CG33205-PF | 1065 | CG33205-RF | 1..366 | 17..382 | 1830 | 100 | Plus |
| CG33205-PG | 1065 | CG33205-RG | 1..366 | 17..382 | 1830 | 100 | Plus |
| CG33205-PH | 1068 | CG33205-RH | 1..366 | 17..382 | 1830 | 100 | Plus |
| CG33205-PE | 948 | CG33205-RE | 3..249 | 136..382 | 1235 | 100 | Plus |
| CG33205-PI | 621 | CG33205-RI | 49..201 | 230..382 | 765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RL | 3107 | CG43897-RL | 277..1024 | 17..764 | 3740 | 100 | Plus |
| CG43897-RK | 3074 | CG43897-RK | 238..985 | 17..764 | 3740 | 100 | Plus |
| CG43897-RJ | 3076 | CG43897-RJ | 243..990 | 17..764 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9830996..9831381 | 379..764 | 1930 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830786 | 230..383 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9820441..9820560 | 17..136 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 9824545..9824641 | 135..231 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:04:28 has no hits.
BO18356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:44 Download gff for
BO18356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-PC | 1..748 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:16:45 Download gff for
BO18356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RJ | 235..990 | 9..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:01 Download gff for
BO18356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RJ | 235..990 | 9..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:01 Download gff for
BO18356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9831000..9831381 | 383..764 | 100 | | Plus |
| 3L | 9820433..9820559 | 9..135 | 96 | -> | Plus |
| 3L | 9824546..9824640 | 136..230 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 231..382 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:16:45 Download gff for
BO18356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9813533..9813659 | 9..135 | 96 | -> | Plus |
| arm_3L | 9817646..9817740 | 136..230 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 231..382 | 100 | -> | Plus |
| arm_3L | 9824100..9824481 | 383..764 | 100 | | Plus |
BO18356.complete Sequence
1537 bp assembled on 2006-12-18
GenBank Submission: FJ634389
> BO18356.complete
GAAGTTATCAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGGGTCCCATTTATAACAAC
GTCCAGCCACGCACCACCCAAACACCACAAAATGCCTACCCATCGGCACC
ACAAACCACCAGCACCGCCTACCCCACCAACCAGTACCCAGATAGTTATT
CGCATCAGGAGCAGCAGCAGCAACAGCAGCAACAGCAGCCTGTGCAGTAC
ACACAGGCGCAGTTCGGTCGGCAACGCTCGAGGGAACCCGTCCAGGTTTC
AGCTCCATCTCCAGCTCCCGCAACCGATCCCAGCGGTTATCCATACCAGG
CTAACTATCAGTCCAACTATCCGCAGGAGCCGCTGCAGGCAGTGAACAAT
GTGGGTGGTGGCTGGAAACACATTGGTGCTCCGCAGCCTAAGTCACGCAG
TGAATTCACCGCCGGCAATGGAGCCTATCCCCCGTTCCAGGGATCCTACC
AGCAGCAACAACAGCAGCCGCAGCAGCAGTACGGTGCTCCGTCTTACGAT
GGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCAGCAGCAGCAGGT
TCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTCAGGCGCCCTATCAGC
CACCACAGTGGAACCAGCCGCAGCAGCAGCAGCAGCAGCCATCGTACCAG
GCTTCACCGTACCAACAGCAGCAACAGCAACAGCCATCCTATTACCCACA
GCAAAATGGTGGCTCGACCTATGCTCAACCCCCATACAATTCTTATTCGC
AGCCCCAGTTGCCCTACTCGCAGGATCAGACTGATCTGCAGCAGCAGCAA
CAACAGCAGCAGCAGCAGTATCCGGGAGCCTACGCTGGCCAGGATAGCTA
CCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGGAGGCTCCAGTCA
GCCAGAAGCCTGCACCAGTCTACACTTCGCAGCCAGCCGCCGTCAGTTAT
CAGGGAGGCAGCAAATTGCGCGGAGATTTGAAATGGCCACCACCGGAGTA
CAAGGAGGCCGCGGCTCGCGAGAACGAGGAACGACGCCAGTTGGCGTTGG
GTCCCGTCTGCCGTCCCAGGAGAGTTAACCGGGACTACACACCCTTCTTT
GCCAAGCACCAGTTGAACAATGGCTATCCCAGCTACAAGGTGCCTCCGGG
CACCCAGCACATTTTCGGCGCAAGCTTTCTAGACCAT
BO18356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RJ | 1506 | CG43897-PJ | 1..1503 | 17..1519 | 7515 | 100 | Plus |
| CG43897-RC | 1506 | CG43897-PC | 1..1503 | 17..1519 | 7515 | 100 | Plus |
| CG43897-RB | 1506 | CG43897-PB | 1..1503 | 17..1519 | 7515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RJ | 3076 | CG43897-RJ | 243..1745 | 17..1519 | 7515 | 100 | Plus |
| CG43897-RC | 3497 | CG43897-RC | 664..2166 | 17..1519 | 7515 | 100 | Plus |
| CG43897-RB | 3240 | CG43897-RB | 407..1909 | 17..1519 | 7515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832195..9832680 | 820..1305 | 2430 | 100 | Plus |
| 3L | 28110227 | 3L | 9830996..9831440 | 379..823 | 2225 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830786 | 230..383 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9832738..9832867 | 1304..1433 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9820441..9820560 | 17..136 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 9824545..9824641 | 135..231 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 9832927..9833014 | 1432..1519 | 440 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7078 | 797..1168 | 310 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6923 | 798..983 | 284 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2662 | 798..1167 | 283 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7009 | 798..1036 | 272 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2673 | 798..1160 | 233 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2395..2930 | 798..1314 | 224 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..3034 | 798..1032 | 215 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2905 | 462..1056 | 215 | 53.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2548 | 798..1002 | 205 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..7054 | 798..1054 | 199 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..7077 | 798..1053 | 187 | 57.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1163 | 801..893 | 141 | 61.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1146 | 798..831 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 796..827 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1567 | 800..828 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1546 | 799..828 | 114 | 86.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 935..1037 | 743..844 | 114 | 64.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 151..176 | 796..821 | 112 | 92.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9181..9206 | 796..821 | 112 | 92.3 | Plus |
BO18356.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:37 Download gff for
BO18356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 1..1506 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:45 Download gff for
BO18356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 656..2158 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:23 Download gff for
BO18356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RB | 407..1909 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:40 Download gff for
BO18356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 648..2165 | 9..1528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:06 Download gff for
BO18356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RB | 407..1909 | 17..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:06 Download gff for
BO18356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9832739..9832866 | 1305..1432 | 100 | -> | Plus |
| 3L | 9832928..9833014 | 1433..1521 | 97 | | Plus |
| 3L | 9820441..9820559 | 17..135 | 100 | -> | Plus |
| 3L | 9824546..9824640 | 136..230 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 231..382 | 100 | -> | Plus |
| 3L | 9831000..9831440 | 383..823 | 100 | -> | Plus |
| 3L | 9832199..9832679 | 824..1304 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:23 Download gff for
BO18356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9813541..9813659 | 17..135 | 100 | -> | Plus |
| arm_3L | 9817646..9817740 | 136..230 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 231..382 | 100 | -> | Plus |
| arm_3L | 9824100..9824540 | 383..823 | 100 | -> | Plus |
| arm_3L | 9825299..9825779 | 824..1304 | 100 | -> | Plus |
| arm_3L | 9825839..9825966 | 1305..1432 | 100 | -> | Plus |
| arm_3L | 9826028..9826114 | 1433..1521 | 97 | | Plus |
BO18356.pep Sequence
Translation from 16 to 1537
> BO18356.pep
MAALQRKLVHKQFNSPMGLYSQENVKATLNRELKAFGGEGIEVDDQITKP
LNLANSAVLRAVEEEEQQAKCGYKRVAWPPASEERIIREFTPQPQTQSPA
PGAGGYYPQAHAPTAAAAAPPQGPIYNNVQPRTTQTPQNAYPSAPQTTST
AYPTNQYPDSYSHQEQQQQQQQQQPVQYTQAQFGRQRSREPVQVSAPSPA
PATDPSGYPYQANYQSNYPQEPLQAVNNVGGGWKHIGAPQPKSRSEFTAG
NGAYPPFQGSYQQQQQQPQQQYGAPSYDGQQPGAQWQQQQQQQQVPQQQY
QPQSQAQAPYQPPQWNQPQQQQQQPSYQASPYQQQQQQQPSYYPQQNGGS
TYAQPPYNSYSQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSYRGASP
GIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEYKEAAA
RENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPGTQHIF
GASFLDH
BO18356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-PJ | 501 | CG43897-PJ | 1..501 | 1..501 | 2710 | 100 | Plus |
| CG43897-PC | 501 | CG43897-PC | 1..501 | 1..501 | 2710 | 100 | Plus |
| CG43897-PB | 501 | CG43897-PB | 1..501 | 1..501 | 2710 | 100 | Plus |
| CG43897-PK | 502 | CG43897-PK | 1..502 | 1..501 | 2698 | 99.8 | Plus |
| CG43897-PL | 500 | CG43897-PL | 1..500 | 1..501 | 2693 | 99.8 | Plus |
