Clone Sequence Records
BO18357.3prime Sequence
727 bp (611 high quality bases) assembled on 2006-10-13
> BO18357.3prime
ATGGTCTAGAAAGCTTGCCGGGCTTTGCTTTTGCATTTGCCGGAAGCAGC
CCCGGCACACCGGCACCGGCTTTCCACTGTCGTGTCCTGGCAGAGCCACG
TTCTTGTCTATGCAGCGCTCGCAGAAGATGTCCCCGCAGCGCCAGCAGTG
AGTCTTTTTGCTGAACTGATCGAAGGGCGTGGAGCAGGAGCAGGTGGTTA
CGTTGCGCATGGGCTTCCAGTCTACGGCCACGGAGTTGATCTCCTCGGGC
AGCGCCTGCGGCGGACTGGATTGTTCCGCGCTCAGCGACAGACTGGCGAA
GGACATGTTGCTGGCCTTCAGCGGATGATCGTCGTCGGCGGCAGACAGTT
CGCTAAGCTTCTTATCGTAGTTGTATTTGTTGTCATTGATCTCGTTGCTG
GAGAGCTCCTTGTTCACTTTGCCAGGGGCGCTGGTGGCGTCTTGCAGTTT
CTTGGCCGACTTGGAAATGTAGTTCTTGAAGCTGGCTATGCGCTTGGTCA
GATGCTGCACGTGGTCCTCCAGCGAGTTGCAGTGCTCCTTGCTATCGAGC
AGCACGTCGCCCAGTGGCTCCCGCGGATGAATGCCGCTCTCGAAGCGACT
GTACATGCCGCGCCAGAACTTGATGCACTGCGGTGCCAGGTTGGCCTTAA
TGGCCTCGTCTACATTTGGTTTGTACAGCGGGTTGATATACTCGTTCAGG
TGATTGGCCATATAGCCCCACAGCGAG
BO18357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-PB | 2070 | CG3530-RB | 1359..2067 | 727..19 | 3545 | 100 | Minus |
| CG3530-PA | 2286 | CG3530-RA | 1575..2283 | 727..19 | 3545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RC | 3193 | CG3530-RC | 1970..2678 | 727..19 | 3545 | 100 | Minus |
| CG3530-RA | 3063 | CG3530-RA | 1840..2548 | 727..19 | 3545 | 100 | Minus |
| CG3530-RB | 2810 | CG3530-RB | 1587..2295 | 727..19 | 3545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23390006..23390248 | 377..619 | 1215 | 100 | Plus |
| 2R | 25286936 | 2R | 23389719..23389941 | 154..376 | 1115 | 100 | Plus |
| 2R | 25286936 | 2R | 23389524..23389660 | 19..155 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 23390303..23390412 | 618..727 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:50:04 has no hits.
BO18357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:44 Download gff for
BO18357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-PA | 1575..2286 | 18..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:58:14 Download gff for
BO18357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 1587..2295 | 19..727 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:11:21 Download gff for
BO18357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 1587..2295 | 19..727 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:21 Download gff for
BO18357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23390006..23390248 | 377..619 | 100 | <- | Plus |
| 2R | 23390305..23390412 | 620..727 | 100 | | Plus |
| 2R | 23389524..23389658 | 19..153 | 100 | <- | Plus |
| 2R | 23389719..23389941 | 154..376 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:58:14 Download gff for
BO18357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19277047..19277181 | 19..153 | 100 | <- | Plus |
| arm_2R | 19277242..19277464 | 154..376 | 100 | <- | Plus |
| arm_2R | 19277529..19277771 | 377..619 | 100 | <- | Plus |
| arm_2R | 19277828..19277935 | 620..727 | 100 | | Plus |
BO18357.5prime Sequence
720 bp (676 high quality bases) assembled on 2006-10-13
> BO18357.5prime
GAAGTTATCAGTCGACATGGACGAAATAAAGCTCGCCAAGGTGGAAAATG
TGCGGATGATAGATCGCTACAATACCAAAAATCCCACGGTTGGCACACTC
TATCTAACGGCCACCCATCTGATATTCGTGGAGCCCGACAGCAACAAGGA
GACCTGGATCCTGCACATGCACGTGGCCAGCATTGAGAAGCTTCCCTTGA
GCACGACAGGATCTCCGCTACTCATCCGCTGCAAGACCTTCCTCTCCGTA
ACTTTCGTCATTCCCAAGGACTCCGAATGCCACGATGTCTACACTTCGCT
GCTGAAACTCTTCCAGCCGGTGTCCATCAACAAATTGTACTGCTTCAACT
ACCAGCCGAACAAGGATGATTTCCCCAAGAACGCTGGCTGGGATTACTTT
AAACTGGAGGCGGAGTTCAAGCACATGCTGGTGCCCAACGAGGCCTGGAC
GCTGTGCTCCATGAACGAGAAGTACGAGCTGTGCGACACCTATCCGCGTC
AGATTTACGTGCCCAAGGAGGCCACCACGCTGATGCTCATCAGCAGCTCG
CGATTCCGCTCCAAGGGGCGGCTGCCAGTGCTCACCTATCTGCACAACAA
CAAGGCTTCCATCTGCCGCTGCAGTCAGCCCCTGTCCGGATTCAGTGCCC
GCTGTCTGGAGGATGAGCAGATGCTGGAGGCCATACGCAAGACGAATTCC
AACACGGACTACATGTATGT
BO18357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-PB | 2070 | CG3530-RB | 1..704 | 17..720 | 3495 | 99.8 | Plus |
| CG3530-PA | 2286 | CG3530-RA | 238..920 | 38..720 | 3390 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RB | 2810 | CG3530-RB | 229..932 | 17..720 | 3505 | 99.9 | Plus |
| CG3530-RA | 3063 | CG3530-RA | 503..1185 | 38..720 | 3400 | 99.9 | Plus |
| CG3530-RC | 3193 | CG3530-RC | 752..1315 | 157..720 | 2805 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23391389..23391674 | 605..320 | 1430 | 100 | Minus |
| 2R | 25286936 | 2R | 23391741..23391904 | 320..157 | 805 | 99.4 | Minus |
| 2R | 25286936 | 2R | 23393364..23393482 | 157..39 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 23391211..23391328 | 720..603 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:55:52 has no hits.
BO18357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:45 Download gff for
BO18357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-PB | 1..704 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:06:06 Download gff for
BO18357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 229..932 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:00:54 Download gff for
BO18357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 229..932 | 17..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:00:54 Download gff for
BO18357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23391211..23391326 | 605..720 | 100 | <- | Minus |
| 2R | 23391390..23391673 | 321..604 | 100 | <- | Minus |
| 2R | 23391741..23391903 | 158..320 | 99 | <- | Minus |
| 2R | 23393364..23393480 | 41..157 | 100 | <- | Minus |
| 2R | 23396429..23396452 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:06:06 Download gff for
BO18357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19278734..19278849 | 605..720 | 100 | <- | Minus |
| arm_2R | 19278913..19279196 | 321..604 | 100 | <- | Minus |
| arm_2R | 19279264..19279426 | 158..320 | 99 | <- | Minus |
| arm_2R | 19280887..19281003 | 41..157 | 100 | <- | Minus |
| arm_2R | 19283952..19283975 | 17..40 | 100 | | Minus |
BO18357.complete Sequence
2101 bp assembled on 2007-03-23
GenBank Submission: FJ634390
> BO18357.complete
GAAGTTATCAGTCGACATGGACGAAATAAAGCTCGCCAAGGTGGAAAATG
TGCGGATGATAGATCGCTACAATACCAAAAATCCCACGGTTGGCACACTC
TATCTAACGGCCACCCATCTGATATTCGTGGAGCCCGACAGCAACAAGGA
GACCTGGATCCTGCACATGCACGTGGCCAGCATTGAGAAGCTTCCCTTGA
GCACGACAGGATCTCCGCTACTCATCCGCTGCAAGACCTTCCTCTCCGTA
ACTTTCGTCATTCCCAAGGACTCCGAATGCCACGATGTCTACACTTCGCT
GCTGAAACTCTTCCAGCCGGTGTCCATCAACAAATTGTACTGCTTCAACT
ACCAGCCGAACAAGGATGATTTCCCCAAGAACGCTGGCTGGGATTACTTT
AAACTGGAGGCGGAGTTCAAGCACATGCTGGTGCCCAACGAGGCCTGGAC
GCTGTGCTCCATGAACGAGAAGTACGAGCTGTGCGACACCTATCCGCGTC
AGATTTACGTGCCCAAGGAGGCCACCACGCTGATGCTCATCAGCAGCTCG
CGATTCCGCTCCAAGGGGCGGCTGCCAGTGCTCACCTATCTGCACAACAA
CAAGGCTTCCATCTGCCGCTGCAGTCAGCCCCTGTCCGGATTCAGTGCCC
GCTGTCTGGAGGATGAGCAGATGCTGGAGGCCATACGCAAGACGAATTCC
AACACGGACTACATGTATGTGGTGGACACGCGACCGCGGATTAATGCCAT
GGCAAACAGAGCCGCCGGCAAGGGATACGAGAACGAGGCCTTCTACGAGA
ACATCAAATTCCACTTCCTCGGCATTGAGAACATCCACGTCCAGCGTGCC
AGTCTGCAAAAGGTGCTTGAGGCCTGCGAACAGAAGTCGCCCACGATGAG
CGCCTTCATAAATGCCCTGGAGTCATCCGGCTGGCTGAAGCACATTCGCT
CCATATTGGACACGTCGAGCTTCATCGCCAACGCCGTGGACAAGGGCGTC
TCGGTGGTGGTCCACTGCTCCGACGGCTGGGACCGCACGGCCCAGGTCTG
TTCACTGGCGCAGCTGATGCTGAACCCCTACTACCGAACCATCAAGGGCT
TCCAGGCGCTAATCGAGAAGGACTGGCTGGCATTCGGGCACAAGTTCAGC
GAGCGCTGCGGTCACATCCAGACGGATGCCCGCGAGGTGTCGCCGATCTT
CACACAGTTCCTGGACTGTACCTGGCAGCTAATGTCGCAGCGCAGCGAGG
CCTTCGAGTTCAACGAGCGGTTCCTGCTCATCCTGCACGACCATGTGCAC
TCATGTCAATTCGGCACCTTCGTGGGCAACTGCGAGAAGGATCGCTTGGA
CCTAAAGCTGGCCGAGCGCACCTTCTCGCTGTGGGGCTATATGGCCAATC
ACCTGAACGAGTATATCAACCCGCTGTACAAACCAAATGTAGACGAGGCC
ATTAAGGCCAACCTGGCACCGCAGTGCATCAAGTTCTGGCGCGGCATGTA
CAGTCGCTTCGAGAGCGGCATTCATCCGCGGGAGCCACTGGGCGACGTGC
TGCTCGATAGCAAGGAGCACTGCAACTCGCTGGAGGACCACGTGCAGCAT
CTGACCAAGCGCATAGCCAGCTTCAAGAACTACATTTCCAAGTCGGCCAA
GAAACTGCAAGACGCCACCAGCGCCCCTGGCAAAGTGAACAAGGAGCTCT
CCAGCAACGAGATCAATGACAACAAATACAACTACGATAAGAAGCTTAGC
GAACTGTCTGCCGCCGACGACGATCATCCGCTGAAGGCCAGCAACATGTC
CTTCGCCAGTCTGTCGCTGAGCGCGGAACAATCCAGTCCGCCGCAGGCGC
TGCCCGAGGAGATCAACTCCGTGGCCGTAGACTGGAAGCCCATGCGCAAC
GTAACCACCTGCTCCTGCTCCACGCCCTTCGATCAGTTCAGCAAAAAGAC
TCACTGCTGGCGCTGCGGGGACATCTTCTGCGAGCGCTGCATAGACAAGA
ACGTGGCTCTGCCAGGACACGACAGTGGAAAGCCGGTGCCGGTGTGCCGG
GGCTGCTTCCGGCAAATGCAAAAGCAAAGCCCGGCAAGCTTTCTAGACCA
T
BO18357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RB | 2070 | CG3530-PB | 1..2067 | 17..2083 | 10320 | 100 | Plus |
| CG3530-RA | 2286 | CG3530-PA | 238..2283 | 38..2083 | 10215 | 100 | Plus |
| CG3530-RC | 1920 | CG3530-PC | 1..1917 | 167..2083 | 9570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RB | 2810 | CG3530-RB | 229..2295 | 17..2083 | 10320 | 100 | Plus |
| CG3530-RA | 3063 | CG3530-RA | 503..2548 | 38..2083 | 10215 | 100 | Plus |
| CG3530-RC | 3193 | CG3530-RC | 752..2678 | 157..2083 | 9620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23390303..23390819 | 1484..968 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 23391389..23391674 | 605..320 | 1430 | 100 | Minus |
| 2R | 25286936 | 2R | 23390006..23390248 | 1725..1483 | 1215 | 100 | Minus |
| 2R | 25286936 | 2R | 23390895..23391125 | 969..739 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 23389719..23389941 | 1948..1726 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 23391741..23391904 | 320..157 | 805 | 99.4 | Minus |
| 2R | 25286936 | 2R | 23389524..23389660 | 2083..1947 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 23391192..23391328 | 739..603 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 23393364..23393482 | 157..39 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:47:19 has no hits.
BO18357.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:03 Download gff for
BO18357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 1..2070 | 17..2084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:01 Download gff for
BO18357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 228..2294 | 17..2083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:31 Download gff for
BO18357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 229..2295 | 17..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:03 Download gff for
BO18357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 228..2294 | 17..2083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:42 Download gff for
BO18357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 229..2295 | 17..2085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:42 Download gff for
BO18357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23389522..23389658 | 1949..2085 | 98 | <- | Minus |
| 2R | 23389719..23389941 | 1726..1948 | 100 | <- | Minus |
| 2R | 23390305..23390817 | 970..1482 | 100 | <- | Minus |
| 2R | 23390895..23391124 | 740..969 | 100 | <- | Minus |
| 2R | 23391192..23391326 | 605..739 | 100 | <- | Minus |
| 2R | 23391390..23391673 | 321..604 | 100 | <- | Minus |
| 2R | 23391741..23391903 | 158..320 | 99 | <- | Minus |
| 2R | 23393364..23393480 | 41..157 | 100 | <- | Minus |
| 2R | 23396429..23396452 | 17..40 | 100 | | Minus |
| 2R | 23390006..23390248 | 1483..1725 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:31 Download gff for
BO18357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19277045..19277181 | 1949..2085 | 98 | <- | Minus |
| arm_2R | 19277242..19277464 | 1726..1948 | 100 | <- | Minus |
| arm_2R | 19277529..19277771 | 1483..1725 | 100 | <- | Minus |
| arm_2R | 19277828..19278340 | 970..1482 | 100 | <- | Minus |
| arm_2R | 19278418..19278647 | 740..969 | 100 | <- | Minus |
| arm_2R | 19278715..19278849 | 605..739 | 100 | <- | Minus |
| arm_2R | 19278913..19279196 | 321..604 | 100 | <- | Minus |
| arm_2R | 19279264..19279426 | 158..320 | 99 | <- | Minus |
| arm_2R | 19280887..19281003 | 41..157 | 100 | <- | Minus |
| arm_2R | 19283952..19283975 | 17..40 | 100 | | Minus |
BO18357.pep Sequence
Translation from 16 to 2101
> BO18357.pep
MDEIKLAKVENVRMIDRYNTKNPTVGTLYLTATHLIFVEPDSNKETWILH
MHVASIEKLPLSTTGSPLLIRCKTFLSVTFVIPKDSECHDVYTSLLKLFQ
PVSINKLYCFNYQPNKDDFPKNAGWDYFKLEAEFKHMLVPNEAWTLCSMN
EKYELCDTYPRQIYVPKEATTLMLISSSRFRSKGRLPVLTYLHNNKASIC
RCSQPLSGFSARCLEDEQMLEAIRKTNSNTDYMYVVDTRPRINAMANRAA
GKGYENEAFYENIKFHFLGIENIHVQRASLQKVLEACEQKSPTMSAFINA
LESSGWLKHIRSILDTSSFIANAVDKGVSVVVHCSDGWDRTAQVCSLAQL
MLNPYYRTIKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLD
CTWQLMSQRSEAFEFNERFLLILHDHVHSCQFGTFVGNCEKDRLDLKLAE
RTFSLWGYMANHLNEYINPLYKPNVDEAIKANLAPQCIKFWRGMYSRFES
GIHPREPLGDVLLDSKEHCNSLEDHVQHLTKRIASFKNYISKSAKKLQDA
TSAPGKVNKELSSNEINDNKYNYDKKLSELSAADDDHPLKASNMSFASLS
LSAEQSSPPQALPEEINSVAVDWKPMRNVTTCSCSTPFDQFSKKTHCWRC
GDIFCERCIDKNVALPGHDSGKPVPVCRGCFRQMQKQSPASFLDH
BO18357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-PB | 689 | CG3530-PB | 1..689 | 1..689 | 3691 | 100 | Plus |
| CG3530-PA | 761 | CG3530-PA | 78..761 | 6..689 | 3661 | 99.9 | Plus |
| CG3530-PC | 639 | CG3530-PC | 1..639 | 51..689 | 3428 | 100 | Plus |
| mtm-PB | 619 | CG9115-PB | 106..570 | 53..502 | 857 | 40.3 | Plus |
| mtm-PA | 619 | CG9115-PA | 106..570 | 53..502 | 857 | 40.3 | Plus |
